TCONS_00006987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006987
Unique NameTCONS_00006987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006987 ID=TCONS_00006987|Name=TCONS_00006987|organism=Clytia hemisphaerica|type=transcript|length=275bp
tcaagattgaagaattcgcaACGCTTTTTTGGTTGCGGTGGGCCCAAGGT
GTACTGGAGATCATTTTATCTACATCATTCATATATACTACTATAGCATG
TTATCGTATTGAAATCTTGCCACGTGGGGCATACCCCCTAGATACCCAAC
AGTAGCCCAAATTCTATAAGCACAAATTAACTTTTGGATTGGATACATTT
TTCAGCATCTATTTTAACTTTAATAATATGgtatttattttaatgattta
actcaaattttctcaattggcgctt
Run BLAST on NCBI

transcript from alignment at sc0000072:183089..183363

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006987 ID=TCONS_00006987|Name=TCONS_00006987|organism=Clytia hemisphaerica|type=transcript|length=275bp|location=Sequence derived from alignment at sc0000072:183089..183363 (Clytia hemisphaerica)
aagcgccaattgagaaaatttgagttaaatcattaaaataaatacCATAT
TATTAAAGTTAAAATAGATGCTGAAAAATGTATCCAATCCAAAAGTTAAT
TTGTGCTTATAGAATTTGGGCTACTGTTGGGTATCTAGGGGGTATGCCCC
ACGTGGCAAGATTTCAATACGATAACATGCTATAGTAGTATATATGAATG
ATGTAGATAAAATGATCTCCAGTACACCTTGGGCCCACCGCAACCAAAAA
AGCGTtgcgaattcttcaatcttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003907XLOC_003907Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006987-exon-sc0000072-1491911889:183089..183363TCONS_00006987-exon-sc0000072-1491911889:183089..183363Clytia hemisphaericaexon
TCONS_00006987-exon-sc0000072-1510915933:183089..183363TCONS_00006987-exon-sc0000072-1510915933:183089..183363Clytia hemisphaericaexon
TCONS_00006987-exon-sc0000072-1575043694:183089..183363TCONS_00006987-exon-sc0000072-1575043694:183089..183363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:183089..183363 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.528573	0.515442	1.19695	0.585517	1.04902	2.81636	3.86354	8.12565	4.00876	4.9655	5.35515	4.57635	22.2898	10.2221	9.90466	96.0935	9.12634	4.06705	8.90412	3.87124	2.55527	0	3.94722	5.78778	2.83753	7.59727	2.89911	1.54701	13.456	8.96668
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top