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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006974 ID=TCONS_00006974|Name=TCONS_00006974|organism=Clytia hemisphaerica|type=transcript|length=1917bpRun BLAST on NCBI protein sequence of TCONS_00006974-protein >TCONS_00006974-protein ID=TCONS_00006974-protein|Name=TCONS_00006974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp MSPNKARKRLACIRCVLDTVKNIKTNKPLPKELCFVPHEVEYVVSNDSTTRun BLAST on NCBI transcript from alignment at sc0000072:719389..748088- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006974 ID=TCONS_00006974|Name=TCONS_00006974|organism=Clytia hemisphaerica|type=transcript|length=28700bp|location=Sequence derived from alignment at sc0000072:719389..748088- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000072:719389..748088- >TCONS_00006974 ID=TCONS_00006974|Name=TCONS_00006974|organism=Clytia hemisphaerica|type=CDS|length=14010bp|location=Sequence derived from alignment at sc0000072:719389..748088- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00006974 vs. Swiss-Prot (Human)
Match: HECD3 (E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens GN=HECTD3 PE=1 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 1.972e-73 Identity = 158/471 (33.55%), Postives = 248/471 (52.65%), Query Frame = 2
Query: 80 RKRLACIRCVLDTVKNIKTNKPLPKELCFVPHEVEYVVSNDSTTGSN------KHTSLSFKVWNA-PMKRDGFVFGKITVPETEFKTFSLV-VTGDEYADDMGDWIELTKDSFKHVEVNADIKATHVIEGAWILWHARDNPRSENVPLLVPKHELSDGANKQSQSKDDIFDGWTSALIXXXXXXXXXXXPVYKWMNVVESNYMLRIIPSQLPSNADMDAISKLSTPPPNWSMETDEELVRFLVDNCKTHGQTMGGASKYIEQVTVS--TEQEFASNLLDGDADTFWESDGSLGRHYIRLQIMAGVIIQKLIIGVDQTDDNYMPSRILVHGTTENGQTKMLNETRIDCTSQTGDVLIMENAPEFYPTVEIRIKECKDDGIDCRIHYIKIVSSKQKQSGLNRALFD-KDLMRYPKLESVDVKNRDLLYNRSRALNRFMTLFDSVIQYLLPSWEYTAGTYSCLEAIRQLLPLSR 1459
R+ L +R + + ++++ +PLP L FVP EV Y + D S + L +V A P G + E + + V TG+E + G W++LTK+ A+ ++ W+L + VP+ P H Q + +F +PV +W VV+ Y R+ P+ A +A+ +L PP W+ E DE+L+ FL D+ + +G +Y+E + VS TE+ S L D +ADT+WESDGS +H++RL + G I++KL++ VD TDDN+MP R++V+G E K L++ ID T GDV ++E+ P +EIRI EC+DDGID R+ +KI SS+Q++ GLN LF L+RYP+LE D ++LY R+ L RF+ + DSV+ +L+P+W++T GT+S ++ ++Q L LSR
Sbjct: 14 RQLLGRVRFLAEAARSLRAGRPLPAALAFVPREVLYKLYKDPAGPSRVLLPVWEAEGLGLRVGAAGPAPGTGSGPLRAARDSIELRRGACVRTTGEELCNGHGLWVKLTKEQL------AEHLGDCGLQEGWLLVCRPAEGGARLVPIDTPNH---------LQRQQQLFG--------------VDYRPVLRWEQVVDLTYSHRLGSRPQPAEAYAEAVQRLLYVPPTWTYECDEDLIHFLYDHLGKEDENLGSVKQYVESIDVSSYTEEFNVSCLTDSNADTYWESDGSQCQHWVRLTMKKGTIVKKLLLTVDTTDDNFMPKRVVVYG-GEGDNLKKLSDVSIDET-LIGDVCVLEDMTVHLPIIEIRIVECRDDGIDVRLRGVKIKSSRQRELGLNADLFQPTSLVRYPRLEGTDP---EVLYRRAVLLQRFIKILDSVLHHLVPAWDHTLGTFSEIKQVKQFLLLSR 450 The following BLAST results are available for this feature:
BLAST of TCONS_00006974 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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