TCONS_00006974-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00006974-protein
Unique Name	TCONS_00006974-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	466

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00006974-protein ID=TCONS_00006974-protein|Name=TCONS_00006974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp
MSPNKARKRLACIRCVLDTVKNIKTNKPLPKELCFVPHEVEYVVSNDSTT
GSNKHTSLSFKVWNAPMKRDGFVFGKITVPETEFKTFSLVVTGDEYADDM
GDWIELTKDSFKHVEVNADIKATHVIEGAWILWHARDNPRSENVPLLVPK
HELSDGANKQSQSKDDIFDGWTSALIKSKQDDDKKSKPVYKWMNVVESNY
MLRIIPSQLPSNADMDAISKLSTPPPNWSMETDEELVRFLVDNCKTHGQT
MGGASKYIEQVTVSTEQEFASNLLDGDADTFWESDGSLGRHYIRLQIMAG
VIIQKLIIGVDQTDDNYMPSRILVHGTTENGQTKMLNETRIDCTSQTGDV
LIMENAPEFYPTVEIRIKECKDDGIDCRIHYIKIVSSKQKQSGLNRALFD
KDLMRYPKLESVDVKNRDLLYNRSRALNRFMTLFDSVIQYLLPSWEYTAG
TYSCLEAIRQLLPLSR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003895	XLOC_003895	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00006974	TCONS_00006974	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004939	APC_su10/DOC_dom
IPR008979	Galactose-bd-like

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004939	APC10/DOC domain	SMART	SM01337	APC10_2	coord: 251..420 e-value: 1.7E-18 score: 77.4
IPR004939	APC10/DOC domain	PFAM	PF03256	ANAPC10	coord: 271..395 e-value: 1.3E-10 score: 41.2
IPR004939	APC10/DOC domain	PROSITE	PS51284	DOC	coord: 231..411 score: 15.464
IPR008979	Galactose-binding domain-like	GENE3D	2.60.120.260		coord: 245..388 e-value: 1.9E-19 score: 69.7
IPR008979	Galactose-binding domain-like	SUPERFAMILY	49785	Galactose-binding domain-like	coord: 256..385

Blast

[Close]

BLAST of TCONS_00006974-protein vs. Swiss-Prot (Human)
Match: HECD3 (E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens GN=HECTD3 PE=1 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 4.891e-77
Identity = 158/471 (33.55%), Postives = 248/471 (52.65%), Query Frame = 0

Query:    7 RKRLACIRCVLDTVKNIKTNKPLPKELCFVPHEVEYVVSNDSTTGSN------KHTSLSFKVWNA-PMKRDGFVFGKITVPETEFKTFSLV-VTGDEYADDMGDWIELTKDSFKHVEVNADIKATHVIEGAWILWHARDNPRSENVPLLVPKHELSDGANKQSQSKDDIFDGWTSALIKSKQDDDKKSKPVYKWMNVVESNYMLRIIPSQLPSNADMDAISKLSTPPPNWSMETDEELVRFLVDNCKTHGQTMGGASKYIEQVTVS--TEQEFASNLLDGDADTFWESDGSLGRHYIRLQIMAGVIIQKLIIGVDQTDDNYMPSRILVHGTTENGQTKMLNETRIDCTSQTGDVLIMENAPEFYPTVEIRIKECKDDGIDCRIHYIKIVSSKQKQSGLNRALFD-KDLMRYPKLESVDVKNRDLLYNRSRALNRFMTLFDSVIQYLLPSWEYTAGTYSCLEAIRQLLPLSR 466
            R+ L  +R + +  ++++  +PLP  L FVP EV Y +  D    S       +   L  +V  A P    G    +      E +  + V  TG+E  +  G W++LTK+        A+      ++  W+L        +  VP+  P H                       L + +Q      +PV +W  VV+  Y  R+     P+ A  +A+ +L   PP W+ E DE+L+ FL D+     + +G   +Y+E + VS  TE+   S L D +ADT+WESDGS  +H++RL +  G I++KL++ VD TDDN+MP R++V+G  E    K L++  ID T   GDV ++E+     P +EIRI EC+DDGID R+  +KI SS+Q++ GLN  LF    L+RYP+LE  D    ++LY R+  L RF+ + DSV+ +L+P+W++T GT+S ++ ++Q L LSR
Sbjct:   14 RQLLGRVRFLAEAARSLRAGRPLPAALAFVPREVLYKLYKDPAGPSRVLLPVWEAEGLGLRVGAAGPAPGTGSGPLRAARDSIELRRGACVRTTGEELCNGHGLWVKLTKEQL------AEHLGDCGLQEGWLLVCRPAEGGARLVPIDTPNH-----------------------LQRQQQLFGVDYRPVLRWEQVVDLTYSHRLGSRPQPAEAYAEAVQRLLYVPPTWTYECDEDLIHFLYDHLGKEDENLGSVKQYVESIDVSSYTEEFNVSCLTDSNADTYWESDGSQCQHWVRLTMKKGTIVKKLLLTVDTTDDNFMPKRVVVYG-GEGDNLKKLSDVSIDET-LIGDVCVLEDMTVHLPIIEIRIVECRDDGIDVRLRGVKIKSSRQRELGLNADLFQPTSLVRYPRLEGTDP---EVLYRRAVLLQRFIKILDSVLHHLVPAWDHTLGTFSEIKQVKQFLLLSR 450

The following BLAST results are available for this feature:

BLAST of TCONS_00006974-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00006974-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HECD3	4.891e-77	33.55	E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens...	[more]

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TCONS_00006974-protein (polypeptide) - C. hemisphaerica