TCONS_00006973 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006973
Unique Name	TCONS_00006973
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	567

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000072:714917..718871-
coding sequence from alignment at sc0000072:714917..718871-

transcript sequence

>TCONS_00006973 ID=TCONS_00006973|Name=TCONS_00006973|organism=Clytia hemisphaerica|type=transcript|length=567bp
NGAACATCTTGTGGATCCATCTCAAGACCCAGAGGctaaaaattctattt
tcaacCAGCTTTACGAAGCATTGAGACCAGACAAATGTGAAGTCAAGCTT
GATTACAGGTGGCCGGTGAAGTACGACCAATGGTGGGAATGCAAATTCAT
TGGCGAAGGGATAATTGATCAAGGGGGTGGTTTCCGTGACAGTTTATCAG
ACCTCGCAGAAGAACTTTGTCCTTCATCTCAAAACAACTCACCCTTACCA
CTACCATACTTTGTTCGAAGTCCAAATCAGACAGCGACTTCGAATGTGTA
TCGGGATTGCTATGTACCGAATCCCGATTGTCATCAATCATCCCGATATG
AATGGATCGGGCAACTGATGGGTGCATGTCTGAGGGGTAAAGAAAGTTTG
GTCATATCTTTGCCACCGTTGATATGGAAATTATTGAACGGAGAATCGAT
CTCTTTCGATAAAGATTACCACACCATCGATGCAACTGAGGTACAATTAC
ACGAATCTTTACTGAAagctgaagaagaaaaattcaatgAAGCATTTGGT
AATATTTTAACATACAC

Run BLAST on NCBI

protein sequence of TCONS_00006973-protein

>TCONS_00006973-protein ID=TCONS_00006973-protein|Name=TCONS_00006973-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
EHLVDPSQDPEAKNSIFNQLYEALRPDKCEVKLDYRWPVKYDQWWECKFI
GEGIIDQGGGFRDSLSDLAEELCPSSQNNSPLPLPYFVRSPNQTATSNVY
RDCYVPNPDCHQSSRYEWIGQLMGACLRGKESLVISLPPLIWKLLNGESI
SFDKDYHTIDATEVQLHESLLKAEEEKFNEAFGNILTY

Run BLAST on NCBI

transcript from alignment at sc0000072:714917..718871-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006973 ID=TCONS_00006973|Name=TCONS_00006973|organism=Clytia hemisphaerica|type=transcript|length=3955bp|location=Sequence derived from alignment at sc0000072:714917..718871- (Clytia hemisphaerica)
NGAACATCTTGTGGATCCATCTCAAGACCCAGAGGCTAAAAATTCTATTT
TCAACCAGGTAAATATTCGAGGCTAGCTAGCGAGGTTAAGTATCGCGAGT
TTATGTATTCGCGGCGGAGTGACTGAATCGATTTGGAACAACCTGCGATT
ATAACCCACAAAATTGAAGATAGTAAAAGTGTTTGTTTGTTTGTTTACCT
TCGTTCTCAGTCGCACAGGATCTAAACAATTCTGACACCAACCTTCTTCG
TTGCTAAAAAAGAACACTGCCCAGCTGGCACACAACGTTGTTTCAACGTC
CATCTAACGTTATATGGACGTTGAAACAACGTTGTGTGCCATCTGGGTGA
TACATAAACTCGTCATTTTGCGAAAACGAGCGGGTTTCATACAGTTTCAT
TCAGGTCATTTAAAACTGATAGAAACGTGTGATGGGTATGCCATAAACAA
AGTTATTACCATTACTTTTCCGTAAGGCATAGATCACTGATTTGCTGCCG
TTTTTGTACGGGTTGGCGTGGTAGATAAACAATTTCCATTTGAATTGGAA
TCTCTTGTAAGTTCGAGTGAGTAAATCTTACGTAAAACGTAAAAATTACG
TTTTCTCGTTTTAGCTTTACGAAGCATTGAGACCAGACAAATGTGAAGTC
AAGCTTGATTACAGGTTTGCACTTCTCCCATCCAATAATACAGTTAACGC
TTTCTAATTTGATTTTAATCGAATAAGGGAACGTGTCGAATGGTAAGAAG
AGTGTCGAATGGTAAGAAGAGCGTCGTTTATGAGTGTTTCTTATTGACGA
CGGTGACTTTCGATATTATCGAATGATGGAGCGTACCGAATAGTAGAATG
TGGAGAGCGTCAAGAGGTGTTCCATTTAGTCCGCCCTTAACCTTTATTGC
ATTTAGCATGGTAATGAAATTTGTGAAAAAAAATAATGCTTTGTATTAAA
CGGTTACGGCCAAAACTTGGAATCAACAGTACGACTTTCGAAACTTTGGA
AAACATGAACAATTCAAATAATGTTTTTATCTCTGCTACTTTTAGTTACC
AAGTCTAGTCAGAAACGTCGACTGACATTATTTCCTTAACATTAGGTGGC
CGGTGAAGTACGACCAATGGTGGGAATGCAAATTCATTGGCGAAGGGATA
ATTGATCAAGGTAGAAGATTCTCAATTTGAAATATTTCACTTACTCACTA
TCTTATATTCTCAGTGTTAAGATTCTTTCGTCTCATTGAAGTATATGAAA
AAGGCTTTTCCTTTTGTCTCAAAATTCAGCATAACTCACCAAAATTTCAT
TTTAAATAAATTCCATTTTCCATTTAAGACGAAGAACCTTGTTTCACCAC
TGATTTCTACCTCATTTAGGTCTGAAAGGTTTCATAATCAACTATTCTCG
CATATTCTTCTTTTAGGGGGTGGTTTCCGTGACAGTTTATCAGACCTCGC
AGAAGAACTTTGTCCTTCATCTCAAAACAACTCACCCTTACCACTACCAT
ACTTTGTTCGAAGTCCAAATCAGGTACATTTTTAAACTAAAAAGATATAT
ACTTTAACGTTAGAGTTAGTTAGTCTTATTGGGCCATTCCATTTTATGAG
CATACAGGGGATGGACGAACATTTCCAGGGGGTAATCCGACGAGAAGAAT
TTCCAGGGAGTCTAAAGAAGTGTTTTTCATTTTTCCAGGGGGTAAAAAGT
TATTCTTGAATTTCCAGGTGGTGAACAACTGATTTTAGTTCGTTCACCCT
CACTTTAAATAATTTTTTCCAAGGGTTCTTTTGCAAATTTTGCCATTTTC
TAGGGGGTATCTACACTCTTCCAAGAAATTTGTTTTCATTTGAAAAGGTT
CGTCCACCCCCTGTATGGAGATTTATTGGAACAGCCCAATTTGTGTACTG
TTTTTTTAGTAACCTATAAAAAGCTGCATACATGGTTGTTCATTTTCCAA
CTCATTACGATGGACGAAGAACAAAGGACCAATCTGAAAGAACTTCGTCG
TCTTCTTCTGTAATCCAATTGATCTGCTCCTTGCCGTCCATCAAAACCAA
CTGAACCTCTGTTTCCAACATTAGCACCTTACTTAATACAATCTTGTGTG
AATAATGCCCTAGGCTCGGCCTCATTGAAAGATACTTTAATGCGTGATAT
GGTTAGATGTAATGCAAGAATTTCGTTTTTGTGTTGTGCCAAAAAATAAA
AATATGATTTTATCAATTTAAACAAGCATCTTCATTTCTTGCCCACCGTT
TTAGACAGCGACTTCGAATGTGTATCGGGATTGCTATGTACCGAATCCCG
ATTGTCATCAATCATCCCGATATGAATGGATCGGGCAACTGATGGGTGCA
TGTCTGAGGGGTAAAGAAAGTTTGGTAAGTTTCCTTCCGTGTTTTATGTT
CTTTTTGTCTTTTCGAAAATTAAAAAAAAACATTCGCTGTTTAACCTGGC
CACATATAAGTTCATGCTGATGCTGTTAATATTTTCGGGAATATTTTTCA
GCCTAAAAATTGCTTATGGATTTTAACCTGTACTGCTCAGTATCTTTCTA
AATTTTGGCTTTTTAACTCATCATCATCATCATCATCATCATCATCATCT
TTCGACCGCGGTCGAGATGATGGATTCCACCCTCTGGCGCCAAGAATCGC
GGTCGCGCATGGCAGTCTCCAGGTCACTATAAAGAAGTCCAGTGTCCCTG
CTAACTGCGTCAGTAAAAGTTAACTTTCTCGATCTTTTAACTCATACCTG
AACTGCCTACGAGATGTTTATGGATTTTAACCCATATAGCTTGGTATCTT
TCAAAACTTAGGCTTTGTGACTCACACCTAAAAAACCTTAAGTTACATAT
TTAATGCTGTTGGACGTTCTAATATTAGATAATGCCGATATATTAGATAC
CTGATGATAGCCTGTCTGATTTTTTGGTTGATGATCTTTCTTTTTTCAGA
AAATCCTACAAAACATAGAAAATACTGCGACTTGATCACAGATATCATAT
TCCTTTACACACTAGACAGATTTCCTGTGAAAGCGTTTTCAGTTTTATGG
TTCGACTAGTCCGTCACGTTGTTTTCTGTCTTTTCACGTTCGAATTTCAA
AATAATTAAATCTCGCTGCCGACAACAAGAATAGAATTCAACATGGTGGG
CTAGTCAGCTCTTAAAACTCGACACTCTTCCTTCTTCATATGAAGCCCTA
TCCAGTCAGTATGCAGAGATTAGTGGTATTGATAAAAACCTCTGCTTTTC
CATATTTCAGGTCATATCTTTGCCACCGTTGATATGGAAATTATTGAACG
GAGAATCGATCTCTTTCGATAAAGATTACCACACCATCGATGCAACTGAG
GTTTGTCTGTCACATTCCATTCTTCACTCTAAGCATGGAGTTTAAGATCT
ACACTTTTCAATCAATATTCTAGAATATATGTGTATATCAATTTTCCCGA
TAAAAGTCAGGATCTGACCCCTGTGTACTAGAAATAGAAATACGATGGCC
AAAATCCGTTAAACCGTCACCCTGTTATCAACTAGCCCGGGGCCACTGAT
AGACTGATTGGCTGATAAGTGGCCCGGCGTGATTTGGCAGAATCTATTTT
TTGACTTTGCTTGAGGTGATCCAGTCCCTTTTTGAAGAAAAACAAACAGA
AAACAATGACCAATAGGCCAATTTTTTGAGGTATTTTCTTGTTTTTATAA
TAGTTTCATAAAAATTGACGGGATTTTAGAACATATTTAATTATTTTATT
GTTTTCTTAAAAATTTTGAAAACGAAAAAATTCAAGACGGTCATATCTTC
TAGTCTACTTCACTGGACTCAGCGCCATTAAAATCATCAGGAAGCAAAGT
TGTGAAATATCTAAAATAATCTCTACAGGTACAATTACACGAATCTTTAC
TGAAAGCTGAAGAAGAAAAATTCAATGAAGCATTTGGTAATATTTTAACA
TACAC

Coding sequence (CDS) from alignment at sc0000072:714917..718871-

>TCONS_00006973 ID=TCONS_00006973|Name=TCONS_00006973|organism=Clytia hemisphaerica|type=CDS|length=3948bp|location=Sequence derived from alignment at sc0000072:714917..718871- (Clytia hemisphaerica)
GTACAATTACACGAATCTTTACTGAAAGCTGAAGAAGAAAAATTCAATGA
AGCATTTGGTAATATTTTAACATACGTCATATCTTTGCCACCGTTGATAT
GGAAATTATTGAACGGAGAATCGATCTCTTTCGATAAAGATTACCACACC
ATCGATGCAACTGAGACAGCGACTTCGAATGTGTATCGGGATTGCTATGT
ACCGAATCCCGATTGTCATCAATCATCCCGATATGAATGGATCGGGCAAC
TGATGGGTGCATGTCTGAGGGGTAAAGAAAGTTTGGGGGTGGTTTCCGTG
ACAGTTTATCAGACCTCGCAGAAGAACTTTGTCCTTCATCTCAAAACAAC
TCACCCTTACCACTACCATACTTTGTTCGAAGTCCAAATCAGGTGGCCGG
TGAAGTACGACCAATGGTGGGAATGCAAATTCATTGGCGAAGGGATAATT
GATCAAGCTTTACGAAGCATTGAGACCAGACAAATGTGAAGTCAAGCTTG
ATTACAGGAACATCTTGTGGATCCATCTCAAGACCCAGAGGCTAAAAATT
CTATTTTCAACCAGGTACAATTACACGAATCTTTACTGAAAGCTGAAGAA
GAAAAATTCAATGAAGCATTTGGTAATATTTTAACATACGTCATATCTTT
GCCACCGTTGATATGGAAATTATTGAACGGAGAATCGATCTCTTTCGATA
AAGATTACCACACCATCGATGCAACTGAGACAGCGACTTCGAATGTGTAT
CGGGATTGCTATGTACCGAATCCCGATTGTCATCAATCATCCCGATATGA
ATGGATCGGGCAACTGATGGGTGCATGTCTGAGGGGTAAAGAAAGTTTGG
GGGTGGTTTCCGTGACAGTTTATCAGACCTCGCAGAAGAACTTTGTCCTT
CATCTCAAAACAACTCACCCTTACCACTACCATACTTTGTTCGAAGTCCA
AATCAGGTGGCCGGTGAAGTACGACCAATGGTGGGAATGCAAATTCATTG
GCGAAGGGATAATTGATCAAGCTTTACGAAGCATTGAGACCAGACAAATG
TGAAGTCAAGCTTGATTACAGGAACATCTTGTGGATCCATCTCAAGACCC
AGAGGCTAAAAATTCTATTTTCAACCAGGTACAATTACACGAATCTTTAC
TGAAAGCTGAAGAAGAAAAATTCAATGAAGCATTTGGTAATATTTTAACA
TACGTCATATCTTTGCCACCGTTGATATGGAAATTATTGAACGGAGAATC
GATCTCTTTCGATAAAGATTACCACACCATCGATGCAACTGAGACAGCGA
CTTCGAATGTGTATCGGGATTGCTATGTACCGAATCCCGATTGTCATCAA
TCATCCCGATATGAATGGATCGGGCAACTGATGGGTGCATGTCTGAGGGG
TAAAGAAAGTTTGGGGGTGGTTTCCGTGACAGTTTATCAGACCTCGCAGA
AGAACTTTGTCCTTCATCTCAAAACAACTCACCCTTACCACTACCATACT
TTGTTCGAAGTCCAAATCAGGTGGCCGGTGAAGTACGACCAATGGTGGGA
ATGCAAATTCATTGGCGAAGGGATAATTGATCAAGCTTTACGAAGCATTG
AGACCAGACAAATGTGAAGTCAAGCTTGATTACAGGAACATCTTGTGGAT
CCATCTCAAGACCCAGAGGCTAAAAATTCTATTTTCAACCAGGTACAATT
ACACGAATCTTTACTGAAAGCTGAAGAAGAAAAATTCAATGAAGCATTTG
GTAATATTTTAACATACGTCATATCTTTGCCACCGTTGATATGGAAATTA
TTGAACGGAGAATCGATCTCTTTCGATAAAGATTACCACACCATCGATGC
AACTGAGACAGCGACTTCGAATGTGTATCGGGATTGCTATGTACCGAATC
CCGATTGTCATCAATCATCCCGATATGAATGGATCGGGCAACTGATGGGT
GCATGTCTGAGGGGTAAAGAAAGTTTGGGGGTGGTTTCCGTGACAGTTTA
TCAGACCTCGCAGAAGAACTTTGTCCTTCATCTCAAAACAACTCACCCTT
ACCACTACCATACTTTGTTCGAAGTCCAAATCAGGTGGCCGGTGAAGTAC
GACCAATGGTGGGAATGCAAATTCATTGGCGAAGGGATAATTGATCAAGC
TTTACGAAGCATTGAGACCAGACAAATGTGAAGTCAAGCTTGATTACAGG
AACATCTTGTGGATCCATCTCAAGACCCAGAGGCTAAAAATTCTATTTTC
AACCAGGTACAATTACACGAATCTTTACTGAAAGCTGAAGAAGAAAAATT
CAATGAAGCATTTGGTAATATTTTAACATACGTCATATCTTTGCCACCGT
TGATATGGAAATTATTGAACGGAGAATCGATCTCTTTCGATAAAGATTAC
CACACCATCGATGCAACTGAGACAGCGACTTCGAATGTGTATCGGGATTG
CTATGTACCGAATCCCGATTGTCATCAATCATCCCGATATGAATGGATCG
GGCAACTGATGGGTGCATGTCTGAGGGGTAAAGAAAGTTTGGGGGTGGTT
TCCGTGACAGTTTATCAGACCTCGCAGAAGAACTTTGTCCTTCATCTCAA
AACAACTCACCCTTACCACTACCATACTTTGTTCGAAGTCCAAATCAGGT
GGCCGGTGAAGTACGACCAATGGTGGGAATGCAAATTCATTGGCGAAGGG
ATAATTGATCAAGCTTTACGAAGCATTGAGACCAGACAAATGTGAAGTCA
AGCTTGATTACAGGAACATCTTGTGGATCCATCTCAAGACCCAGAGGCTA
AAAATTCTATTTTCAACCAGGTACAATTACACGAATCTTTACTGAAAGCT
GAAGAAGAAAAATTCAATGAAGCATTTGGTAATATTTTAACATACGTCAT
ATCTTTGCCACCGTTGATATGGAAATTATTGAACGGAGAATCGATCTCTT
TCGATAAAGATTACCACACCATCGATGCAACTGAGACAGCGACTTCGAAT
GTGTATCGGGATTGCTATGTACCGAATCCCGATTGTCATCAATCATCCCG
ATATGAATGGATCGGGCAACTGATGGGTGCATGTCTGAGGGGTAAAGAAA
GTTTGGGGGTGGTTTCCGTGACAGTTTATCAGACCTCGCAGAAGAACTTT
GTCCTTCATCTCAAAACAACTCACCCTTACCACTACCATACTTTGTTCGA
AGTCCAAATCAGGTGGCCGGTGAAGTACGACCAATGGTGGGAATGCAAAT
TCATTGGCGAAGGGATAATTGATCAAGCTTTACGAAGCATTGAGACCAGA
CAAATGTGAAGTCAAGCTTGATTACAGGAACATCTTGTGGATCCATCTCA
AGACCCAGAGGCTAAAAATTCTATTTTCAACCAGGTACAATTACACGAAT
CTTTACTGAAAGCTGAAGAAGAAAAATTCAATGAAGCATTTGGTAATATT
TTAACATACGTCATATCTTTGCCACCGTTGATATGGAAATTATTGAACGG
AGAATCGATCTCTTTCGATAAAGATTACCACACCATCGATGCAACTGAGA
CAGCGACTTCGAATGTGTATCGGGATTGCTATGTACCGAATCCCGATTGT
CATCAATCATCCCGATATGAATGGATCGGGCAACTGATGGGTGCATGTCT
GAGGGGTAAAGAAAGTTTGGGGGTGGTTTCCGTGACAGTTTATCAGACCT
CGCAGAAGAACTTTGTCCTTCATCTCAAAACAACTCACCCTTACCACTAC
CATACTTTGTTCGAAGTCCAAATCAGGTGGCCGGTGAAGTACGACCAATG
GTGGGAATGCAAATTCATTGGCGAAGGGATAATTGATCAAGCTTTACGAA
GCATTGAGACCAGACAAATGTGAAGTCAAGCTTGATTACAGGAACATCTT
GTGGATCCATCTCAAGACCCAGAGGCTAAAAATTCTATTTTCAACCAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003894	XLOC_003894	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00006973-protein	TCONS_00006973-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000072	supercontig	sc0000072:714917..718871 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
53.9103	60.2054	41.1796	36.2261	13.7651	10.2437	19.2387	23.7364	21.7125	25.3428	20.6827	20.988	28.011	29.9795	28.8113	35.7501	46.1986	44.1495	31.0769	34.7244	28.2655	31.6866	35.4513	33.47	55.3275	52.3222	11.9579	14.067	18.8088	21.6287

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000569	HECT_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004842	ubiquitin-protein transferase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004842	ubiquitin-protein transferase activity

Blast

[Close]

BLAST of TCONS_00006973 vs. Swiss-Prot (Human)
Match: HECD3 (E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens GN=HECTD3 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 1.130e-64
Identity = 105/189 (55.56%), Postives = 135/189 (71.43%), Query Frame = 2

Query:    2 EHLVDPSQDPEAKNSIFNQLYEALRP-DKCEVKLDYRWPVKYDQWWECKFIGEGIIDQGGGFRDSLSDLAEELCXXXXXXXXXXXXYFVRSPNQTATSNVYRDCYVPNPDCHQSSRYEWIGQLMGACLRGKESLVISLPPLIWKLLNGESISFDKDYHTIDATEVQLHESLLKAEEEKFNEAFGNILTY 565
            EH   PS+DP  KN++F Q+YE L+P DK E  LDYRWP++YDQWWECKFI EGIIDQGGGFRDSL+D++EELCPSS +       +FVR+ NQ   +   RD YVPNP C   ++YEWIGQLMGA LRGKE LV++LP  +WK L+GE +S+ KD+  +D+  V+L E +   ++E F   FG  LT+
Sbjct:  483 EHRACPSRDPACKNAVFTQVYEGLKPSDKYEKPLDYRWPMRYDQWWECKFIAEGIIDQGGGFRDSLADMSEELCPSSADTPVPLP-FFVRTANQGNGTGEARDMYVPNPSCRDFAKYEWIGQLMGAALRGKEFLVLALPGFVWKQLSGEEVSWSKDFPAVDSVLVKLLEVMEGMDKETFEFKFGKELTF 670

The following BLAST results are available for this feature:

BLAST of TCONS_00006973 vs. Swiss-Prot (Human)

BLAST of TCONS_00006973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HECD3	1.130e-64	55.56	E3 ubiquitin-protein ligase HECTD3 OS=Homo sapiens...	[more]

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TCONS_00006973 (transcript) - C. hemisphaerica