TCONS_00006942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006942
Unique NameTCONS_00006942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006942 ID=TCONS_00006942|Name=TCONS_00006942|organism=Clytia hemisphaerica|type=transcript|length=506bp
CGAAGTTTTTGATGAGACCATTGGATAGTTTTATTCGTGGAACAATCGGT
GCTGACAACGAGTTCCTCAAACCAACATTGTAAGTGCCATTACTGGAAAA
CTCTATTGTATTTACTTGTAAGTCAACAATTCTCTTAGAAACCCTATCAA
TGAAAACTAGTTTGTACTCACATTTTAATTGTCTTTTTTGGAAACTCTAt
cgtttttattaaaatattagGAAAACAAATTAACCCGAAAAAGAAGTGAG
CGTTTCGCTGTCAAGGGCAAATTTTGGATTCTAAAATCATTCACAAACTC
ATTTCTCAACTGTATCTTGATTCTTTCGTCTGCCGTATATTTTGAATCAG
TTCCCTATTCCATTGAGTTCAAACAAATGTTCAGCTAAATCTGTTAAAAG
TTTCTGACACAATGCCATTAGACATAaagttttacataagtgtttccttt
tcatatcagacacgtgtttcatatcaggacggtgtctgcttattgttata
ttgtgc
Run BLAST on NCBI

transcript from alignment at sc0000072:428341..428846-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006942 ID=TCONS_00006942|Name=TCONS_00006942|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at sc0000072:428341..428846- (Clytia hemisphaerica)
CGAAGTTTTTGATGAGACCATTGGATAGTTTTATTCGTGGAACAATCGGT
GCTGACAACGAGTTCCTCAAACCAACATTGTAAGTGCCATTACTGGAAAA
CTCTATTGTATTTACTTGTAAGTCAACAATTCTCTTAGAAACCCTATCAA
TGAAAACTAGTTTGTACTCACATTTTAATTGTCTTTTTTGGAAACTCTAT
CGTTTTTATTAAAATATTAGGAAAACAAATTAACCCGAAAAAGAAGTGAG
CGTTTCGCTGTCAAGGGCAAATTTTGGATTCTAAAATCATTCACAAACTC
ATTTCTCAACTGTATCTTGATTCTTTCGTCTGCCGTATATTTTGAATCAG
TTCCCTATTCCATTGAGTTCAAACAAATGTTCAGCTAAATCTGTTAAAAG
TTTCTGACACAATGCCATTAGACATAAAGTTTTACATAAGTGTTTCCTTT
TCATATCAGACACGTGTTTCATATCAGGACGGTGTCTGCTTATTGTTATA
TTGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003882XLOC_003882Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006942-exon-sc0000072-1575043694:428341..428846TCONS_00006942-exon-sc0000072-1575043694:428341..428846Clytia hemisphaericaexon
TCONS_00006942-exon-sc0000072-1510915933:428341..428846TCONS_00006942-exon-sc0000072-1510915933:428341..428846Clytia hemisphaericaexon
TCONS_00006942-exon-sc0000072-1491911889:428341..428846TCONS_00006942-exon-sc0000072-1491911889:428341..428846Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:428341..428846 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.403221	1.37672	1.43696	0.80545	0.763773	0.767883	0.862659	0.112787	0.602034	0.673817	0.18261	0.174873	0.0976806	0	0.252147	0	0.221511	0.64695	0.446559	0.449074	0.439017	0.477419	0.450945	0.256504	0.228924	1.18548	0	0.337516	0.331727
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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