TCONS_00006924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006924
Unique NameTCONS_00006924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length773

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006924 ID=TCONS_00006924|Name=TCONS_00006924|organism=Clytia hemisphaerica|type=transcript|length=773bp
TGGCAAGAAGGGATGCTGTACACAAGTTTTGTAAGGAGAAAGTAGACGAG
AAACAAGAACGAAAAAAATGGCCTCTAACAATAAAGAAGAATTGTTACAA
GAAGAACAATCAACTAGACTGGATGTTCAATCTTCCAACATCAAAGAGCA
ATGTTCCATTTGCTTGGCTCCCTTGCTAGAGAGTTCAACATCAAATAAAT
GCAGAGGGTGTACAGAGAAAATCAATGCAGTGCCAACTGGTTTCCAATTC
GTAATTGCCGGACAAGACCGAAAGGAGTTCGAATGTCCGATATGTTTGTG
TATCATTCGAGATGCAACGGAATTGGGGTGCGAACATATCATGTGTGGTA
AATGTTTGGAAAGATATGAGCATGATCAGATTGTTAAAACTAAAGGAAAT
GGTGAAGAGAAAGATGCAATATTCTACTGCAGTATCTGTCAAGAGCCTTA
TCTCCCAGAAAAGAAAACGCCTGTGAAGTCATTGGACCGAATCATCCAAA
CAACAATTCCAGTCAAATGCGAACAGAAAGGTTGTGAATGGATTGGGTGC
ATCATAGATTACAAGATCCATAAAGAGAAATGCGAATTTGTTTCCATACA
GTGTGTTTACTTTGACGTAGGCTGTAATGCTAAGGTCAGTACTAGCTTAT
TTCACCGTTAGAAAAAAATTCTCGTTTTAAAGTTAGGTTAGTGCAAGCTT
TTTTCCTGTAAGAAACATTATTTATATCTTACCCAATAAATTAAGAAAGT
ATATTATGCTCGTGGTCAGAATC
Run BLAST on NCBI

protein sequence of TCONS_00006924-protein

>TCONS_00006924-protein ID=TCONS_00006924-protein|Name=TCONS_00006924-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MASNNKEELLQEEQSTRLDVQSSNIKEQCSICLAPLLESSTSNKCRGCTE
KINAVPTGFQFVIAGQDRKEFECPICLCIIRDATELGCEHIMCGKCLERY
EHDQIVKTKGNGEEKDAIFYCSICQEPYLPEKKTPVKSLDRIIQTTIPVK
CEQKGCEWIGCIIDYKIHKEKCEFVSIQCVYFDVGCNAKVSTSLFHR
Run BLAST on NCBI

transcript from alignment at sc0000072:233710..236512-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006924 ID=TCONS_00006924|Name=TCONS_00006924|organism=Clytia hemisphaerica|type=transcript|length=2803bp|location=Sequence derived from alignment at sc0000072:233710..236512- (Clytia hemisphaerica)
TGGCAAGAAGGGATGCTGTACACAAGTTTTGTAAGGAGAAAGTAGACGAG
AAACAAGAACGAAAAAAATGGCCTCTAACAATAAAGAAGAATTGTTACAA
GAAGAACAATCAACTAGACTGGATGTTCAATCTTCCAACATCAAAGAGCA
ATGTTCCATTTGCTTGGCTCCCTTGCTAGAGAGTTCAACATCAAATAAAT
GCAGAGGGTGTACAGAGAAAATCAATGCAGTGCCAACTGGTTTCCAATTC
GTAATTGCCGGACAAGACCGAAAGGAGTTCGAATGTCCGATATGTTTGTG
TATCATTCGAGATGCAACGGAATTGGGGTGCGAACATATCATGTGTGGTA
AATGTTTGGAAAGATATGAGCATGATCAGATTGTTAAAACTAAAGGGTAA
CTAAACAATTTTATTCTTAGTAAGTCTTAGTTAGACTATCGAACTGGAAC
ACCTACATGTAAACAAGACAGAAAATCTCAAAGCGTATAATACATACGTT
GTTTTTACAAAAGCGTCTGCATTTATTTTCTTTTACAAAAGCATCCAAAA
CTTTCAAATCAGATGTTCTTAGCTTTTAGAGTTTTGAGTCATAAAATGTT
CTTTACATGTTCTCATTTTTATTGGGGACTCTAAAACAACTGATTTCTTA
GGAAAATGGACTAAGATACTCACAAAATGGGGAAAATAAGAAACGTGTAA
AAATCTTGATTATACAATACAGTTATTTTTTATCCTCAGAACGGCTAAAA
AGTATCGACGCGGCCGGCTAACCTTGGCGGATTCTCTTACGAAGCCATGG
CCGTTAGAGTGAATATGCGCATATTGAGCTTTTCCAGAAAATATTTGAAT
ATAGGGGGGTTGGAGGATATAACATTTTTTCGAAATTTACCCCCGGACAT
TGTGAATTTCGGCCCCCTCGGACAGCAGGTATGACCCTCCCCCGGACATT
GTGAATTTCGGCCCCCTCGGACAGCAGGTATGACCCTCCCCCGGACAAGC
ATTAGTTGACCCCCTGGACACTCAAAATTACCCACAAACAGAGCAAGTTT
ACCCCCGGACAAGGTAAATTTTATAGATTTTTCACTACCCCCGCCCCCCG
GGCACTATATCCTCCATGTACGAACATTTTCTGGAAGAGCCCATTGCACA
GTATCGAAATTTGTTCGCAGATTAGATTGATACATTTCTTATATTTTATC
AATTGTAGAAATGGTGAAGAGAAAGATGCAATATTCTACTGCAGTATCTG
TCAAGAGCCTTATCTCCCAGAAAAGGTGAAGCATGTGTGCTATACTTACT
GTTCGGTAGATAGATTGGAAGAGGAAAATAGAGAAAATCCTCTCAGTAAC
CCGGTGATGTTTTGAAATTCACCGGGTTGGCTGTTAAAAACAGAATATTT
CACCAGTTTTGGATTTGAGATATGAAAAACTCACTGGGGTGGACTTTTAA
CTTAATTTTTAATGAGGTAGTAGGGTCAGCCCATTGAAATGTGTCTTTTA
TTCCATTTTGACCGGGATGACCGGGGTAAGACCATGAATTTCCCAGTTTC
GATTGGGGGGTAAAGAATATCAATTAATTTTGACCGGGTTTACTCAAAAT
ACGAACGTGCGCAACGCACTGGGCTCAACTTCAGTGGCTTCAAATTATTC
ATAGGCCCAATTGTAGACCCCCAAAACATTCACCCAATGAACAAGTGTGC
CAAATTTCAGCCAAATCCAAAACTCCAAAAATCAAAATATTCAAAAAATG
AAAAAAGCTCCCCAGATATTCACCCAAGCAATAAATGTGCCAAATTTCAG
CCAAATCCGACCATTTTTTAAGTCTCCAGGTTGCCCCGAAGTTTTAGCCT
CGTTTTGGCGAAAACTATTCCCCAGGCCCCAAAAATCAAAATTTTCAAAA
AATGAAAAAAACACCCCCAGATATTCACCCAAGGAACAAGTGTGCCAAAT
TTCAGCCAAATCCGACCATTTTTGAAGTCTCCAGGTTGCCCAAAAGTTTT
AGCCTCGTTTTGGCGAAAAACTCGTCCCCAGGCCCCAAAAATTCCTCCTT
AACTTGAACAATCCAAAAAAGGAGACTTCACTGTAAAAATCTTATGACAA
ATAGAAAACACTTGTGAAATCATTGGACGTACCTTTCAAACGAAAAATTA
TTCTCCCGGACGACATAATACTGTATAGATAGGTCAAATATGAGCGACCT
TGGTGCAGTGGTAGAGCATCCGGCTACGGTTCGCAAGGTTGTGGGTTCAA
CCCCCACTGTCGGGTCATACCAAAGACTCTCAAAATAGTACTCAATGCCT
CTCTGCTTGATGCTCAGCAATTAAGAGAAAGATCAAGGGTAAGTGGAGCA
ATCCAGGGAGAAAGAGTGGCGCCCTCCCCTACTTTCGGGTAGAATGCTAT
CGAAAGAGGAGCCTTCAGGTCGCCTCCGACTGCCGTTCGCAGACTTACTT
ACTAGGTCAAATATATCATATTATATTTTATTATGACAAACAGAAAACGC
CTGTGAAGTCATTGGACCGAATCATCCAAACAACAATTCCAGTCAAATGC
GAACAGAAAGGTTGTGAATGGATTGGGTGCATCATAGATTACAAGATCCA
TAAAGAGAAATGCGAATTTGTTTCCATACAGTGTGTTTACTTTGACGTAG
GCTGTAATGCTAAGGTCAGTACTAGCTTATTTCACCGTTAGAAAAAAATT
CTCGTTTTAAAGTTAGGTTAGTGCAAGCTTTTTTCCTGTAAGAAACATTA
TTTATATCTTACCCAATAAATTAAGAAAGTATATTATGCTCGTGGTCAGA
ATC

Coding sequence (CDS) from alignment at sc0000072:233710..236512-

>TCONS_00006924 ID=TCONS_00006924|Name=TCONS_00006924|organism=Clytia hemisphaerica|type=CDS|length=1782bp|location=Sequence derived from alignment at sc0000072:233710..236512- (Clytia hemisphaerica)
AAAACGCCTGTGAAGTCATTGGACCGAATCATCCAAACAACAATTCCAGT
CAAATGCGAACAGAAAGGTTGTGAATGGATTGGGTGCATCATAGATTACA
AGATCCATAAAGAGAAATGCGAATTTGTTTCCATACAGTGTGTTTACTTT
GACGTAGGCTGTAATGCTAAGGTCAGTACTAGCTTATTTCACCGTTAGAA
ATGGTGAAGAGAAAGATGCAATATTCTACTGCAGTATCTGTCAAGAGCCT
TATCTCCCAGAAAAGATGGCCTCTAACAATAAAGAAGAATTGTTACAAGA
AGAACAATCAACTAGACTGGATGTTCAATCTTCCAACATCAAAGAGCAAT
GTTCCATTTGCTTGGCTCCCTTGCTAGAGAGTTCAACATCAAATAAATGC
AGAGGGTGTACAGAGAAAATCAATGCAGTGCCAACTGGTTTCCAATTCGT
AATTGCCGGACAAGACCGAAAGGAGTTCGAATGTCCGATATGTTTGTGTA
TCATTCGAGATGCAACGGAATTGGGGTGCGAACATATCATGTGTGGTAAA
TGTTTGGAAAGATATGAGCATGATCAGATTGTTAAAACTAAAGGAAAACG
CCTGTGAAGTCATTGGACCGAATCATCCAAACAACAATTCCAGTCAAATG
CGAACAGAAAGGTTGTGAATGGATTGGGTGCATCATAGATTACAAGATCC
ATAAAGAGAAATGCGAATTTGTTTCCATACAGTGTGTTTACTTTGACGTA
GGCTGTAATGCTAAGGTCAGTACTAGCTTATTTCACCGTTAGAAATGGTG
AAGAGAAAGATGCAATATTCTACTGCAGTATCTGTCAAGAGCCTTATCTC
CCAGAAAAGATGGCCTCTAACAATAAAGAAGAATTGTTACAAGAAGAACA
ATCAACTAGACTGGATGTTCAATCTTCCAACATCAAAGAGCAATGTTCCA
TTTGCTTGGCTCCCTTGCTAGAGAGTTCAACATCAAATAAATGCAGAGGG
TGTACAGAGAAAATCAATGCAGTGCCAACTGGTTTCCAATTCGTAATTGC
CGGACAAGACCGAAAGGAGTTCGAATGTCCGATATGTTTGTGTATCATTC
GAGATGCAACGGAATTGGGGTGCGAACATATCATGTGTGGTAAATGTTTG
GAAAGATATGAGCATGATCAGATTGTTAAAACTAAAGGAAAACGCCTGTG
AAGTCATTGGACCGAATCATCCAAACAACAATTCCAGTCAAATGCGAACA
GAAAGGTTGTGAATGGATTGGGTGCATCATAGATTACAAGATCCATAAAG
AGAAATGCGAATTTGTTTCCATACAGTGTGTTTACTTTGACGTAGGCTGT
AATGCTAAGGTCAGTACTAGCTTATTTCACCGTTAGAAATGGTGAAGAGA
AAGATGCAATATTCTACTGCAGTATCTGTCAAGAGCCTTATCTCCCAGAA
AAGATGGCCTCTAACAATAAAGAAGAATTGTTACAAGAAGAACAATCAAC
TAGACTGGATGTTCAATCTTCCAACATCAAAGAGCAATGTTCCATTTGCT
TGGCTCCCTTGCTAGAGAGTTCAACATCAAATAAATGCAGAGGGTGTACA
GAGAAAATCAATGCAGTGCCAACTGGTTTCCAATTCGTAATTGCCGGACA
AGACCGAAAGGAGTTCGAATGTCCGATATGTTTGTGTATCATTCGAGATG
CAACGGAATTGGGGTGCGAACATATCATGTGTGGTAAATGTTTGGAAAGA
TATGAGCATGATCAGATTGTTAAAACTAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003873XLOC_003873Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006924-proteinTCONS_00006924-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006924-exon-sc0000072-1575043694:236117..236512TCONS_00006924-exon-sc0000072-1575043694:236117..236512Clytia hemisphaericaexon
TCONS_00006924-exon-sc0000072-1575043694:235238..235304TCONS_00006924-exon-sc0000072-1575043694:235238..235304Clytia hemisphaericaexon
TCONS_00006924-exon-sc0000072-1575043694:233710..234019TCONS_00006924-exon-sc0000072-1575043694:233710..234019Clytia hemisphaericaexon
TCONS_00006924-exon-sc0000072-1510915933:236117..236512TCONS_00006924-exon-sc0000072-1510915933:236117..236512Clytia hemisphaericaexon
TCONS_00006924-exon-sc0000072-1510915933:235238..235304TCONS_00006924-exon-sc0000072-1510915933:235238..235304Clytia hemisphaericaexon
TCONS_00006924-exon-sc0000072-1510915933:233710..234019TCONS_00006924-exon-sc0000072-1510915933:233710..234019Clytia hemisphaericaexon
TCONS_00006924-exon-sc0000072-1491911889:236117..236512TCONS_00006924-exon-sc0000072-1491911889:236117..236512Clytia hemisphaericaexon
TCONS_00006924-exon-sc0000072-1491911889:235238..235304TCONS_00006924-exon-sc0000072-1491911889:235238..235304Clytia hemisphaericaexon
TCONS_00006924-exon-sc0000072-1491911889:233710..234019TCONS_00006924-exon-sc0000072-1491911889:233710..234019Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:233710..236512 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.566134	0.184023	0.641006	0.557444	0.424146	0.469233	1.94095	1.58995	3.92258	3.41425	6.50046	4.06368	12.2159	12.2084	14.0375	12.4195	5.90271	6.43729	16.5164	11.2656	6.56845	6.7637	5.12082	8.13086	7.76676	9.16183	8.28034	9.29727	1.536	2.63195
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
IPR001841Znf_RING
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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