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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006890 ID=TCONS_00006890|Name=TCONS_00006890|organism=Clytia hemisphaerica|type=transcript|length=1972bp TATCGAATCGACATTTAAGAAGATCAATTGTGACGTCTCCTCTTTGGTCG ATATGTTGGGCGGAGATGACGGCGTCACTAACGCCAATCTCATGCAGtAT TTGGGTATCATTGAACAACGAACAAATGAACTTCTTCAAGTACAAGCCTT CTTAGCTGCTAAGGTAAGTGGGATCTTGTGAAATTATTTCTCAGGTGCCA AATCAACGCCCCTTCTcctattttgctctaaatagcctggcTTTTGtcta taattaccttattttggggggtATTTAGAGTAAACTAGTCCCCGGCAATT AGATCCGCCCCCCCCCTCTCTATTAAAAATTTTGGCACCTGAGAATAACG GGAAGGatggaaaatgaatttaagtttCACTGAATTTAAGTACAACTCGC GTTCATCGAAGTGGCATGGCATCGGGTACCGTTAATTCGGGATTATTATT CCCTCCTAAAATGTAATCAATGTTTCATTTCTACTAATGATATTTTCATA AACTTACGGATATATTGACAGcctaattttctttcttttgaaatttactG TTTTTACTAAAAGTTGGAGCTAATTTTGGAGagattataaattttcaaac tcGTAGGATGTTGACGTGGCACCAACAACGACTGAGCGCGCCGAATCAGT AGGACTTCTCGGAAAAGGTCCTCTTCCCTTACCTGCAGCAATCTCCATCC AACCTCCCTCAACTGGCGATGATTATGACTCGGATTCATCTTTCcaaagt gaagatgaaaatcGCCCGCTCACTCAACAAGAGTTGAGGCAGAGAATCAT GAAAGGGATCAACAAACGGGAGAATAGTTCTCGGCGTGAAAAAGAGGGCC GCAATTCTCCAGACTACGAACCTGAACGGCCCAAAAAGACCAGTAAGAAG TCCCCGATCAAAGAGCGCTGATAAAGATATTAAACTGTCTTAAACGAACT AACAAAAAGGTCAATGTCGGTTGGTTTGTGTTATGAAAATATACTAACAA AACAGACATGTCTTGCAAATGCAAAGGATCGgctatgtttttcaaaaaac caaTTGCTACCGTAAATtagtctaatgtcaacatccctcttctaattccg acacccttctttggaGATGTAtaaggaaggtcggaatcactgataaacaa aagattttttcctctctaattgccaagcaaacaaaaatagtTTCCATAAG CAATTCCGACCttttattattcctatctctaaagaagtgtgtcgaaatta gaagggggtgtcgatattagaccaacttatgttATCATGATATCCTTAAT GTCTATCCTGAATTGCTACAGTTTATATACAATTATAGACAGTCGATTTT ATATCGTCTTTAATTCTAGGTATATGCGTAAAATTTATAGTTTTAACTTA TTTTAgcctttttattcaaaagttacTAACCATTTAATCTATTTAATCGt gttaattttcgcgaatctggattttgaagaaaaaaatagccAGCCAAAAG TCAGTTGAAGATGATACTGAAAACCTTCTTGATCGTTATATATTATTTCA AGGCCGAAAATTCGATTTTCCAAACTTTGGCGTATTTGATTACGCTTGTC AGCGAGTCTTGCAGAATTTCGTGATGTATTTCcgcgaaaaaggaaaaata aaatataaacgAAATATAAATCTCGCGAAAAGAAATCCAATTACTTCGAT GAAATTGTTTTCAATGTATGTCCTGTAAATATGcaaatttaatttacttt tgtgatgattcgaaaatatttctaattcaataaataatacaaaaattgtA TAAAAACTGCTGTTTGTGTTTCTGTGTCTCTGTGCTTTGATGTTCAGGCT AATTGGCATATTTTTGGTGAATGgcagatttttgaaattatggaGTGGTT AATCTAAATAATTACTAAGAAGCCCAGAATCATTGAGTTTGgaattttca agttaaataaaTTATGACGTTA Run BLAST on NCBI transcript from alignment at sc0000072:481618..483981+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006890 ID=TCONS_00006890|Name=TCONS_00006890|organism=Clytia hemisphaerica|type=transcript|length=2364bp|location=Sequence derived from alignment at sc0000072:481618..483981+ (Clytia hemisphaerica) TATCGAATCGACATTTAAGAAGATCAATTGTGACGTCTCCTCTTTGGTCG
ATATGTTGGGCGGAGATGACGGCGTCACTAACGCCAATCTCATGCAGGTA
CGGGAGAAAACCCATAACCCTTTGATGGTAAAGtggatgctctaccgact
gagctatcTGGCCACCAGTTTGTAGATAACACTAATATACTACCTGTAAT
GAGATGTCCGAATCGGCTTATACAATATCCTTAACAGAACTACTTTAAAA
TGCTATAAGTTTCATATTACTCGTTAGATAATCCAGtcaaaattgttttc
tgaaTCAAAATTCATTATTGTATAATTCTCAAATTCGTTtccattttact
tttttagtATTTGGGTATCATTGAACAACGAACAAATGAACTTCTTCAAG
TACAAGCCTTCTTAGCTGCTAAGGTAAGTGGGATCTTGTGAAATTATTTC
TCAGGTGCCAAATCAACGCCCCTTCTcctattttgctctaaatagcctgg
cTTTTGtctataattaccttattttggggggtATTTAGAGTAAACTAGTC
CCCGGCAATTAGATCCGCCCCCCCCCTCTCTATTAAAAATTTTGGCACCT
GAGAATAACGGGAAGGatggaaaatgaatttaagtttCACTGAATTTAAG
TACAACTCGCGTTCATCGAAGTGGCATGGCATCGGGTACCGTTAATTCGG
GATTATTATTCCCTCCTAAAATGTAATCAATGTTTCATTTCTACTAATGA
TATTTTCATAAACTTACGGATATATTGACAGcctaattttctttcttttg
aaatttactGTTTTTACTAAAAGTTGGAGCTAATTTTGGAGagattataa
attttcaaactcGTAGGATGTTGACGTGGCACCAACAACGACTGAGCGCG
CCGAATCAGTAGGACTTCTCGGAAAAGGTCCTCTTCCCTTACCTGCAGCA
ATCTCCATCCAACCTCCCTCAACTGGCGATGATTATGACTCGGATTCATC
TTTCcaaagtgaagatgaaaatcGCCCGCTCACTCAACAAGAGTTGAGGC
AGAGAATCATGAAAGGGGTAAGTCACTTGTCTATCTGCAGTAGATTCTCT
TCAACTCGAAACTCTGCAACTCGATATTTCCTTGACTCGAACAAATTTAT
CACTCTGGAAATTTCGACCTGTCTTTCAACTCAATCTATTCTTTTCTAGA
TCAACAAACGGGAGAATAGTTCTCGGCGTGAAAAAGAGGGCCGCAATTCT
CCAGACTACGAACCTGAACGGCCCAAAAAGACCAGTAAGAAGTCCCCGAT
CAAAGAGCGCTGATAAAGATATTAAACTGTCTTAAACGAACTAACAAAAA
GGTCAATGTCGGTTGGTTTGTGTTATGAAAATATACTAACAAAACAGACA
TGTCTTGCAAATGCAAAGGATCGgctatgtttttcaaaaaaccaaTTGCT
ACCGTAAATtagtctaatgtcaacatccctcttctaattccgacaccctt
ctttggaGATGTAtaaggaaggtcggaatcactgataaacaaaagatttt
ttcctctctaattgccaagcaaacaaaaatagtTTCCATAAGCAATTCCG
ACCttttattattcctatctctaaagaagtgtgtcgaaattagaaggggg
tgtcgatattagaccaacttatgttATCATGATATCCTTAATGTCTATCC
TGAATTGCTACAGTTTATATACAATTATAGACAGTCGATTTTATATCGTC
TTTAATTCTAGGTATATGCGTAAAATTTATAGTTTTAACTTATTTTAgcc
tttttattcaaaagttacTAACCATTTAATCTATTTAATCGtgttaattt
tcgcgaatctggattttgaagaaaaaaatagccAGCCAAAAGTCAGTTGA
AGATGATACTGAAAACCTTCTTGATCGTTATATATTATTTCAAGGCCGAA
AATTCGATTTTCCAAACTTTGGCGTATTTGATTACGCTTGTCAGCGAGTC
TTGCAGAATTTCGTGATGTATTTCcgcgaaaaaggaaaaataaaatataa
acgAAATATAAATCTCGCGAAAAGAAATCCAATTACTTCGATGAAATTGT
TTTCAATGTATGTCCTGTAAATATGcaaatttaatttacttttgtgatga
ttcgaaaatatttctaattcaataaataatacaaaaattgtATAAAAACT
GCTGTTTGTGTTTCTGTGTCTCTGTGCTTTGATGTTCAGGCTAATTGGCA
TATTTTTGGTGAATGgcagatttttgaaattatggaGTGGTTAATCTAAA
TAATTACTAAGAAGCCCAGAATCATTGAGTTTGgaattttcaagttaaat
aaaTTATGACGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00006890-exon-sc0000072-1491911889:481618..481714 | TCONS_00006890-exon-sc0000072-1491911889:481618..481714 | Clytia hemisphaerica | exon |
TCONS_00006890-exon-sc0000072-1510915933:481618..481714 | TCONS_00006890-exon-sc0000072-1510915933:481618..481714 | Clytia hemisphaerica | exon |
TCONS_00006890-exon-sc0000072-1575043694:481618..481714 | TCONS_00006890-exon-sc0000072-1575043694:481618..481714 | Clytia hemisphaerica | exon |
TCONS_00006890-exon-sc0000072-1491911889:481975..482684 | TCONS_00006890-exon-sc0000072-1491911889:481975..482684 | Clytia hemisphaerica | exon |
TCONS_00006890-exon-sc0000072-1510915933:481975..482684 | TCONS_00006890-exon-sc0000072-1510915933:481975..482684 | Clytia hemisphaerica | exon |
TCONS_00006890-exon-sc0000072-1575043694:481975..482684 | TCONS_00006890-exon-sc0000072-1575043694:481975..482684 | Clytia hemisphaerica | exon |
TCONS_00006890-exon-sc0000072-1491911889:482817..483981 | TCONS_00006890-exon-sc0000072-1491911889:482817..483981 | Clytia hemisphaerica | exon |
TCONS_00006890-exon-sc0000072-1510915933:482817..483981 | TCONS_00006890-exon-sc0000072-1510915933:482817..483981 | Clytia hemisphaerica | exon |
TCONS_00006890-exon-sc0000072-1575043694:482817..483981 | TCONS_00006890-exon-sc0000072-1575043694:482817..483981 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000072 | supercontig | sc0000072:481618..483981 + |
Blast
The following BLAST results are available for this feature:
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