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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006890 ID=TCONS_00006890|Name=TCONS_00006890|organism=Clytia hemisphaerica|type=transcript|length=1972bp
TATCGAATCGACATTTAAGAAGATCAATTGTGACGTCTCCTCTTTGGTCG
ATATGTTGGGCGGAGATGACGGCGTCACTAACGCCAATCTCATGCAGtAT
TTGGGTATCATTGAACAACGAACAAATGAACTTCTTCAAGTACAAGCCTT
CTTAGCTGCTAAGGTAAGTGGGATCTTGTGAAATTATTTCTCAGGTGCCA
AATCAACGCCCCTTCTcctattttgctctaaatagcctggcTTTTGtcta
taattaccttattttggggggtATTTAGAGTAAACTAGTCCCCGGCAATT
AGATCCGCCCCCCCCCTCTCTATTAAAAATTTTGGCACCTGAGAATAACG
GGAAGGatggaaaatgaatttaagtttCACTGAATTTAAGTACAACTCGC
GTTCATCGAAGTGGCATGGCATCGGGTACCGTTAATTCGGGATTATTATT
CCCTCCTAAAATGTAATCAATGTTTCATTTCTACTAATGATATTTTCATA
AACTTACGGATATATTGACAGcctaattttctttcttttgaaatttactG
TTTTTACTAAAAGTTGGAGCTAATTTTGGAGagattataaattttcaaac
tcGTAGGATGTTGACGTGGCACCAACAACGACTGAGCGCGCCGAATCAGT
AGGACTTCTCGGAAAAGGTCCTCTTCCCTTACCTGCAGCAATCTCCATCC
AACCTCCCTCAACTGGCGATGATTATGACTCGGATTCATCTTTCcaaagt
gaagatgaaaatcGCCCGCTCACTCAACAAGAGTTGAGGCAGAGAATCAT
GAAAGGGATCAACAAACGGGAGAATAGTTCTCGGCGTGAAAAAGAGGGCC
GCAATTCTCCAGACTACGAACCTGAACGGCCCAAAAAGACCAGTAAGAAG
TCCCCGATCAAAGAGCGCTGATAAAGATATTAAACTGTCTTAAACGAACT
AACAAAAAGGTCAATGTCGGTTGGTTTGTGTTATGAAAATATACTAACAA
AACAGACATGTCTTGCAAATGCAAAGGATCGgctatgtttttcaaaaaac
caaTTGCTACCGTAAATtagtctaatgtcaacatccctcttctaattccg
acacccttctttggaGATGTAtaaggaaggtcggaatcactgataaacaa
aagattttttcctctctaattgccaagcaaacaaaaatagtTTCCATAAG
CAATTCCGACCttttattattcctatctctaaagaagtgtgtcgaaatta
gaagggggtgtcgatattagaccaacttatgttATCATGATATCCTTAAT
GTCTATCCTGAATTGCTACAGTTTATATACAATTATAGACAGTCGATTTT
ATATCGTCTTTAATTCTAGGTATATGCGTAAAATTTATAGTTTTAACTTA
TTTTAgcctttttattcaaaagttacTAACCATTTAATCTATTTAATCGt
gttaattttcgcgaatctggattttgaagaaaaaaatagccAGCCAAAAG
TCAGTTGAAGATGATACTGAAAACCTTCTTGATCGTTATATATTATTTCA
AGGCCGAAAATTCGATTTTCCAAACTTTGGCGTATTTGATTACGCTTGTC
AGCGAGTCTTGCAGAATTTCGTGATGTATTTCcgcgaaaaaggaaaaata
aaatataaacgAAATATAAATCTCGCGAAAAGAAATCCAATTACTTCGAT
GAAATTGTTTTCAATGTATGTCCTGTAAATATGcaaatttaatttacttt
tgtgatgattcgaaaatatttctaattcaataaataatacaaaaattgtA
TAAAAACTGCTGTTTGTGTTTCTGTGTCTCTGTGCTTTGATGTTCAGGCT
AATTGGCATATTTTTGGTGAATGgcagatttttgaaattatggaGTGGTT
AATCTAAATAATTACTAAGAAGCCCAGAATCATTGAGTTTGgaattttca
agttaaataaaTTATGACGTTA Run BLAST on NCBI transcript from alignment at sc0000072:481618..483981+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006890 ID=TCONS_00006890|Name=TCONS_00006890|organism=Clytia hemisphaerica|type=transcript|length=2364bp|location=Sequence derived from alignment at sc0000072:481618..483981+ (Clytia hemisphaerica)
TATCGAATCGACATTTAAGAAGATCAATTGTGACGTCTCCTCTTTGGTCG
ATATGTTGGGCGGAGATGACGGCGTCACTAACGCCAATCTCATGCAGGTA
CGGGAGAAAACCCATAACCCTTTGATGGTAAAGtggatgctctaccgact
gagctatcTGGCCACCAGTTTGTAGATAACACTAATATACTACCTGTAAT
GAGATGTCCGAATCGGCTTATACAATATCCTTAACAGAACTACTTTAAAA
TGCTATAAGTTTCATATTACTCGTTAGATAATCCAGtcaaaattgttttc
tgaaTCAAAATTCATTATTGTATAATTCTCAAATTCGTTtccattttact
tttttagtATTTGGGTATCATTGAACAACGAACAAATGAACTTCTTCAAG
TACAAGCCTTCTTAGCTGCTAAGGTAAGTGGGATCTTGTGAAATTATTTC
TCAGGTGCCAAATCAACGCCCCTTCTcctattttgctctaaatagcctgg
cTTTTGtctataattaccttattttggggggtATTTAGAGTAAACTAGTC
CCCGGCAATTAGATCCGCCCCCCCCCTCTCTATTAAAAATTTTGGCACCT
GAGAATAACGGGAAGGatggaaaatgaatttaagtttCACTGAATTTAAG
TACAACTCGCGTTCATCGAAGTGGCATGGCATCGGGTACCGTTAATTCGG
GATTATTATTCCCTCCTAAAATGTAATCAATGTTTCATTTCTACTAATGA
TATTTTCATAAACTTACGGATATATTGACAGcctaattttctttcttttg
aaatttactGTTTTTACTAAAAGTTGGAGCTAATTTTGGAGagattataa
attttcaaactcGTAGGATGTTGACGTGGCACCAACAACGACTGAGCGCG
CCGAATCAGTAGGACTTCTCGGAAAAGGTCCTCTTCCCTTACCTGCAGCA
ATCTCCATCCAACCTCCCTCAACTGGCGATGATTATGACTCGGATTCATC
TTTCcaaagtgaagatgaaaatcGCCCGCTCACTCAACAAGAGTTGAGGC
AGAGAATCATGAAAGGGGTAAGTCACTTGTCTATCTGCAGTAGATTCTCT
TCAACTCGAAACTCTGCAACTCGATATTTCCTTGACTCGAACAAATTTAT
CACTCTGGAAATTTCGACCTGTCTTTCAACTCAATCTATTCTTTTCTAGA
TCAACAAACGGGAGAATAGTTCTCGGCGTGAAAAAGAGGGCCGCAATTCT
CCAGACTACGAACCTGAACGGCCCAAAAAGACCAGTAAGAAGTCCCCGAT
CAAAGAGCGCTGATAAAGATATTAAACTGTCTTAAACGAACTAACAAAAA
GGTCAATGTCGGTTGGTTTGTGTTATGAAAATATACTAACAAAACAGACA
TGTCTTGCAAATGCAAAGGATCGgctatgtttttcaaaaaaccaaTTGCT
ACCGTAAATtagtctaatgtcaacatccctcttctaattccgacaccctt
ctttggaGATGTAtaaggaaggtcggaatcactgataaacaaaagatttt
ttcctctctaattgccaagcaaacaaaaatagtTTCCATAAGCAATTCCG
ACCttttattattcctatctctaaagaagtgtgtcgaaattagaaggggg
tgtcgatattagaccaacttatgttATCATGATATCCTTAATGTCTATCC
TGAATTGCTACAGTTTATATACAATTATAGACAGTCGATTTTATATCGTC
TTTAATTCTAGGTATATGCGTAAAATTTATAGTTTTAACTTATTTTAgcc
tttttattcaaaagttacTAACCATTTAATCTATTTAATCGtgttaattt
tcgcgaatctggattttgaagaaaaaaatagccAGCCAAAAGTCAGTTGA
AGATGATACTGAAAACCTTCTTGATCGTTATATATTATTTCAAGGCCGAA
AATTCGATTTTCCAAACTTTGGCGTATTTGATTACGCTTGTCAGCGAGTC
TTGCAGAATTTCGTGATGTATTTCcgcgaaaaaggaaaaataaaatataa
acgAAATATAAATCTCGCGAAAAGAAATCCAATTACTTCGATGAAATTGT
TTTCAATGTATGTCCTGTAAATATGcaaatttaatttacttttgtgatga
ttcgaaaatatttctaattcaataaataatacaaaaattgtATAAAAACT
GCTGTTTGTGTTTCTGTGTCTCTGTGCTTTGATGTTCAGGCTAATTGGCA
TATTTTTGGTGAATGgcagatttttgaaattatggaGTGGTTAATCTAAA
TAATTACTAAGAAGCCCAGAATCATTGAGTTTGgaattttcaagttaaat
aaaTTATGACGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006890-exon-sc0000072-1491911889:481618..481714 | TCONS_00006890-exon-sc0000072-1491911889:481618..481714 | Clytia hemisphaerica | exon |
| TCONS_00006890-exon-sc0000072-1510915933:481618..481714 | TCONS_00006890-exon-sc0000072-1510915933:481618..481714 | Clytia hemisphaerica | exon |
| TCONS_00006890-exon-sc0000072-1575043694:481618..481714 | TCONS_00006890-exon-sc0000072-1575043694:481618..481714 | Clytia hemisphaerica | exon |
| TCONS_00006890-exon-sc0000072-1491911889:481975..482684 | TCONS_00006890-exon-sc0000072-1491911889:481975..482684 | Clytia hemisphaerica | exon |
| TCONS_00006890-exon-sc0000072-1510915933:481975..482684 | TCONS_00006890-exon-sc0000072-1510915933:481975..482684 | Clytia hemisphaerica | exon |
| TCONS_00006890-exon-sc0000072-1575043694:481975..482684 | TCONS_00006890-exon-sc0000072-1575043694:481975..482684 | Clytia hemisphaerica | exon |
| TCONS_00006890-exon-sc0000072-1491911889:482817..483981 | TCONS_00006890-exon-sc0000072-1491911889:482817..483981 | Clytia hemisphaerica | exon |
| TCONS_00006890-exon-sc0000072-1510915933:482817..483981 | TCONS_00006890-exon-sc0000072-1510915933:482817..483981 | Clytia hemisphaerica | exon |
| TCONS_00006890-exon-sc0000072-1575043694:482817..483981 | TCONS_00006890-exon-sc0000072-1575043694:482817..483981 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000072 | supercontig | sc0000072:481618..483981 + |
Blast
The following BLAST results are available for this feature:
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