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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006870 ID=TCONS_00006870|Name=TCONS_00006870|organism=Clytia hemisphaerica|type=transcript|length=900bp
CCTGCAGTTATTGATAGATTGGGACGTTTCAATTTGGAAATTGAACTTGA
CACTGTTGCAGATCTGTTCATTATGCCAAGAAATTGTTATGGTACTTCTA
CCTCAAATCGTGATGATGCCATTCGAGAAGATTTGATTACTGACGGaTGT
CCCAATAAAGACCATGTTTTCAAGAAAGAAACTTCTGTTGACAATGGCAA
GAAATTCCGATTTTCACTAAACGTATTCCGTTTCAAGAACTCGAACGGTA
TGGTCTACATTCATTGCTCCACTCACGTCTGTTTGAGCGGTAGTAACGAA
ACAAACTGTCAATTTGGTTGTGAACAAAATAAAGGACGACGAAGACGTTC
AGTGGAGGATAATGCTTTGACAACACTTGATGATGATTTATCCAAGGATT
ATGATATTCGAACAGGATTGATCATTGTCactgaaaattctaaaaATGAC
GATTCAGCTCGTCAAAACACTCAAGAATCCAACAATGGCCAATTCTTTCA
AACCACGACCAATATCATTCTCATTACAATCATCTTGTTGATGTTAACTT
TCGTTTGTTCTCTTTTGgcttttgttggtttttgtcgTCATCGAAGTGGT
TCGAGAAAGAATGGAAATAAGTTGGAAATGCATTAAGCCATTCAGTGAAA
AATTACGAATTAAATTATTGTTTATTCAAATACTTCGGTTAGTTACTTTC
AGTTAATATTTGTATTTAATAATTTAAAAGTAtcagaaaaatattgtaaa
tttgTATAAATTACATTGAATAATCatagaaaaagattttacttGTAGAA
TTAAAATGTCTTTTGTTTATTATTTATAGCCATTTAGACACCCCTATCCT
TATTCATcttaccttattacatgaaaataaatatggatgtatttaacacg Run BLAST on NCBI transcript from alignment at sc0000072:195261..196800+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006870 ID=TCONS_00006870|Name=TCONS_00006870|organism=Clytia hemisphaerica|type=transcript|length=1540bp|location=Sequence derived from alignment at sc0000072:195261..196800+ (Clytia hemisphaerica)
CCTGCAGTTATTGATAGATTGGGACGTTTCAATTTGGAAATTGAACTTGA
CACTGTTGCAGATCTGTTCATTATGCCAAGAAATTGTTATGGTACTTCTA
CCTCAAATCGTGATGATGCCATTCGAGAAGATTTGATTACTGACGGGTAA
TATAACGCTTTTGTAGAATAAATTACAAAtagcttttttgaaattctttt
atcGGTACGtctaaaaaattcataaatcttggATTAACCAAAACCGTGTC
TGAGCATAAGTTAACAGTGTATAAGCATGCGTTCCCCACCTGTTTCTGCA
AACAAATTAATTTACTTGGACTAGaccagaaaaaatgaaaagttcctGGT
CTGCGTGACTTCGTATTGAATAAAGTGCTAGATACTgaattttctttcag
ttttccTCAATATTTgcctaaaatttaaatttcagaTGTCCCAATAAAGA
CCATGTTTTCAAGAAAGAAACTTCTGTTGACAATGGCAAGAAATTCCGAT
TTTCACTAAACGTATTCCGTTTCAAGAACTCGAACGGTATGGTCTACATT
CATTGCTCCACTCACGTCTGTTTGAGCGGTAGTAACGAAACAAACTGTCA
ATTTGGTTGTGAACAAAATAAAGGACGACGAAGACGTTCAGTGGAGGATA
ATGCTTTGACAACACTTGATGATGATTTATCCAAGGATTATGATATTCGA
ACAGGATTGATCATTGTCactgaaaattctaaaagtaAGTTGCGacatct
ctgaaaaatttaCAGCATGAGTTAGGAATACTGCCTTTGCAAGTAAGCTT
TCAACAAttcaaagaatctttttttattagagGAATGACAGGctcaaaaa
atttataaaatataatctaATAAAAAATGCTCATCCTGGAGTGGCAATGT
GAAGGCTTAAATGAGTAAAAGAAACACAAAAGAATCACAAAAGAATTAAG
AACTTGATTTGACCATTAGGtttaaagtgccaaaaaatcaGAACAACTAA
TCCAGCCATAATGTAAAATTTACTGGTTCACATTCTTTAGGCAAGGAGTG
CCACGATGtaaaatttcatatttatcTTCTTCTAGATGACGATTCAGCTC
GTCAAAACACTCAAGAATCCAACAATGGCCAATTCTTTCAAACCACGACC
AATATCATTCTCATTACAATCATCTTGTTGATGTTAACTTTCGTTTGTTC
TCTTTTGgcttttgttggtttttgtcgTCATCGAAGTGGTTCGAGAAAGA
ATGGAAATAAGTTGGAAATGCATTAAGCCATTCAGTGAAAAATTACGAAT
TAAATTATTGTTTATTCAAATACTTCGGTTAGTTACTTTCAGTTAATATT
TGTATTTAATAATTTAAAAGTAtcagaaaaatattgtaaatttgTATAAA
TTACATTGAATAATCatagaaaaagattttacttGTAGAATTAAAATGTC
TTTTGTTTATTATTTATAGCCATTTAGACACCCCTATCCTTATTCATctt
accttattacatgaaaataaatatggatgtatttaacacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006870-exon-sc0000072-1491911889:195261..195406 | TCONS_00006870-exon-sc0000072-1491911889:195261..195406 | Clytia hemisphaerica | exon |
| TCONS_00006870-exon-sc0000072-1510915933:195261..195406 | TCONS_00006870-exon-sc0000072-1510915933:195261..195406 | Clytia hemisphaerica | exon |
| TCONS_00006870-exon-sc0000072-1575043694:195261..195406 | TCONS_00006870-exon-sc0000072-1575043694:195261..195406 | Clytia hemisphaerica | exon |
| TCONS_00006870-exon-sc0000072-1491911889:195696..195994 | TCONS_00006870-exon-sc0000072-1491911889:195696..195994 | Clytia hemisphaerica | exon |
| TCONS_00006870-exon-sc0000072-1510915933:195696..195994 | TCONS_00006870-exon-sc0000072-1510915933:195696..195994 | Clytia hemisphaerica | exon |
| TCONS_00006870-exon-sc0000072-1575043694:195696..195994 | TCONS_00006870-exon-sc0000072-1575043694:195696..195994 | Clytia hemisphaerica | exon |
| TCONS_00006870-exon-sc0000072-1491911889:196346..196800 | TCONS_00006870-exon-sc0000072-1491911889:196346..196800 | Clytia hemisphaerica | exon |
| TCONS_00006870-exon-sc0000072-1510915933:196346..196800 | TCONS_00006870-exon-sc0000072-1510915933:196346..196800 | Clytia hemisphaerica | exon |
| TCONS_00006870-exon-sc0000072-1575043694:196346..196800 | TCONS_00006870-exon-sc0000072-1575043694:196346..196800 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000072 | supercontig | sc0000072:195261..196800 + |
Blast
The following BLAST results are available for this feature:
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