TCONS_00006858 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006858
Unique NameTCONS_00006858
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006858 ID=TCONS_00006858|Name=TCONS_00006858|organism=Clytia hemisphaerica|type=transcript|length=850bp
CTTCCAAAGATTACTCTGAATGTCACGTGGGCGTATGCAATCAATGTCAT
TGGTCAAGAGTCCTTTCAGATGGTCGCTTCAGAGACAACTTCAAGCGGCA
AGTTCACTGTTTCAATAAACCTCTATAAATCATCCGAATTCAATCAAAAG
TTTACGTACCCGGCTGTTCTGGATATGATCGATCGTTTCAATTTGGAAAT
CGAGCTTGAAAGTGCTGCGGATTTATTTGTAGTTCCACAAAGTTGTTACG
TGACACCTGGTGCTGATCGTACTAaccttatcagggaaaataTTTTCACA
GAAAGGTGCCATAATAATCATCATCACAGATTCAGATTACAACCGTCAGC
TCAAAACACCAAGAAATTCCGATTTTCATTAAATGCTTTCCGATTCAAAA
ACTCGAATGGTATGGTCTACATTCATTGTTCAACACACATTTGTTTGAAA
GGTAGTAACGATACAAAATGCGAATTTGGATGTAGACGGAAAAGACGATC
TGAAGATTCAAAGTTTGTTGATGTTTTGagtaaagattacgtcattcGAA
CTGGATTGATTATCGTTACATCATCATCGTTGTCAAACAATGAaggtaaa
aatattaaaaaataaatataaatattgtaGTATAGTCCCAAGTTTTAACG
AAAATGCACAGTAATTCATTACCTCAAATCATGGATGAGCCAATTGGAGC
CCACAAACTGCGCATGCGTTCTTTTAAACCGTTAGTGGTTAAATAGCGTA
AAGAGTTAAGGGAAATGAATCGCTAGgcgtggtacagtcactttcagtcg
gggttgtggatggtaAATTATGTCGTTCTTTATTgtcgttttttcgtttt
Run BLAST on NCBI

transcript from alignment at sc0000072:141376..143347+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006858 ID=TCONS_00006858|Name=TCONS_00006858|organism=Clytia hemisphaerica|type=transcript|length=1972bp|location=Sequence derived from alignment at sc0000072:141376..143347+ (Clytia hemisphaerica)
CTTCCAAAGATTACTCTGAATGTCACGTGGGCGTATGCAATCAATGTCAT
TGGTCAAGAGTCCTTTCAGATGGTCGCTTCAGAGACAAGTAAGTGTGCTG
TCCCGGACACTGAGCTCGATTACCGTGCCTGAAAACTGCTATGCGAGACC
GGGACTCCTAGCACCAGAGGGTAGAATattagatttataaagcccgaagg
gctagatgtcgtgcttttgcTGGAAAGTATGCCGTGGTTAGGGAGGGAGG
AAATCTTACCTAGGTTACATgacattacaataaaatttcagcgcttgaca
aATAAGAAGCtttgcgggttttcgaaaacaatggcagcaatatttttgcg
atattcacttttttttgcttggaagaccTTAAAGCACGATATCTGGCCCT
TCAGGCTTTACAAAAATCTGTGGTTAGAATCCATCATTTTGACCACGTTC
GAAAGATGACgatgatggtgatgatgatgGGCGGAAGAGTGTTTCTCCTA
TAATTTTTGGTATCTTAAAGTTTGCTCAAATAAACCCTGTCTCGCAGCTC
CGTTGGAGCTTCTTCCCACAGTTGAATTTTTTATGGAGATCTCaacgggg
atagaaattttattgttcccaGGTGGGAATGGTTTTTGAGTTCAATTTCT
TGCCGATTTTGAATTGGGATGAAAACAAATCAATTTTCTAGGGGGGGGGA
GGGCTGAAACTGCAGGGTATCTTTCCCaccaggaaagaaattttgaccTA
ATCTTCAAGTGGGTAGGGGGTCCTCCCCTGGTCTCTGATGCAGGGGTGTC
AAAGTCCATCGTTTCCAAAAGAATCTACATCATATTTTACCAGAATTTAA
CCAGAGTTTTTTACAGTAAATAACTtattttttggttaaaattattcCCT
TCTTTGAAAATCAATAATCCTTTAAATCCCTTAAACAGTATTTTTCTATT
CCCAGCTTCAAGCGGCAAGTTCACTGTTTCAATAAACCTCTATAAATCAT
CCGAATTCAATCAAAAGTTTACGTACCCGGCTGTTCTGGATATGATCGAT
CGTTTCAATTTGGAAATCGAGCTTGAAAGTGCTGCGGATTTATTTGTAGT
TCCACAAAGTTGTTACGTGACACCTGGTGCTGATCGTACTAaccttatca
gggaaaataTTTTCACAGAAAGGTATATCTACCTGATCGGCTCTTTTTAT
ACCAGTCCTCATTTAGCTCCAGCTCCAGCTCCAGCTTGAATTTTCCATCT
TAGCCCGGCTCTTTTAATTTTGATCccttacaccggcccttattacgcct
gCGACGAAAAAAATAGCGATCATGTatgtgtaaaaagggccgataaggta
gttgcTACATCTGTTCAATAATGAGCAGGACCATTAGTTACGGcattatt
aattatttttctttgaatctTTTTCAGGTGCCATAATAATCATCATCACA
GATTCAGATTACAACCGTCAGCTCAAAACACCAAGAAATTCCGATTTTCA
TTAAATGCTTTCCGATTCAAAAACTCGAATGGTATGGTCTACATTCATTG
TTCAACACACATTTGTTTGAAAGGTAGTAACGATACAAAATGCGAATTTG
GATGTAGACGGAAAAGACGATCTGAAGATTCAAAGTTTGTTGATGTTTTG
agtaaagattacgtcattcGAACTGGATTGATTATCGTTACATCATCATC
GTTGTCAAACAATGAaggtaaaaatattaaaaaataaatataaatattgt
aGTATAGTCCCAAGTTTTAACGAAAATGCACAGTAATTCATTACCTCAAA
TCATGGATGAGCCAATTGGAGCCCACAAACTGCGCATGCGTTCTTTTAAA
CCGTTAGTGGTTAAATAGCGTAAAGAGTTAAGGGAAATGAATCGCTAGgc
gtggtacagtcactttcagtcggggttgtggatggtaAATTATGTCGTTC
TTTATTgtcgttttttcgtttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003850XLOC_003850Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006858-exon-sc0000072-1491911889:141376..141463TCONS_00006858-exon-sc0000072-1491911889:141376..141463Clytia hemisphaericaexon
TCONS_00006858-exon-sc0000072-1510915933:141376..141463TCONS_00006858-exon-sc0000072-1510915933:141376..141463Clytia hemisphaericaexon
TCONS_00006858-exon-sc0000072-1575043694:141376..141463TCONS_00006858-exon-sc0000072-1575043694:141376..141463Clytia hemisphaericaexon
TCONS_00006858-exon-sc0000072-1491911889:142331..142547TCONS_00006858-exon-sc0000072-1491911889:142331..142547Clytia hemisphaericaexon
TCONS_00006858-exon-sc0000072-1510915933:142331..142547TCONS_00006858-exon-sc0000072-1510915933:142331..142547Clytia hemisphaericaexon
TCONS_00006858-exon-sc0000072-1575043694:142331..142547TCONS_00006858-exon-sc0000072-1575043694:142331..142547Clytia hemisphaericaexon
TCONS_00006858-exon-sc0000072-1491911889:142803..143347TCONS_00006858-exon-sc0000072-1491911889:142803..143347Clytia hemisphaericaexon
TCONS_00006858-exon-sc0000072-1510915933:142803..143347TCONS_00006858-exon-sc0000072-1510915933:142803..143347Clytia hemisphaericaexon
TCONS_00006858-exon-sc0000072-1575043694:142803..143347TCONS_00006858-exon-sc0000072-1575043694:142803..143347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:141376..143347 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.2539	26.4051	23.9231	7.97523	0	0.351007	0	0	0.112247	0.0382803	0.112149	0.0942577	0.149062	0.0386799	0.127164	0.0338792	0.0839039	0.0115936	0.0588356	0.0615672	0	0	0.388013	0.53321	0	0	0	0	0.581797	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006858 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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