TCONS_00006829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006829
Unique NameTCONS_00006829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length783

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006829 ID=TCONS_00006829|Name=TCONS_00006829|organism=Clytia hemisphaerica|type=transcript|length=783bp
atttcgaaTTCACATCCAAAGATTGGGTCTAGCATTACAACTTTAACTTC
TAAGTAGATGAGTACCTCTGCATATGTAACCCCTCTGACGTGGGATGCGT
AACGTGTATCAAATTCCCGTCCCAGAGTTACCCCtatctttgtgtttttg
agttttagagaAATAATTAGAAGTTTTATATGagaaatctttaaatttca
ttcaatttgaattaaaaatttgaatggctagagATTGGTACAATTATTGA
CTTCCTAAAGCTGATGCGTGCAGTTTAACCTCTGCACGACACTATCTTAG
CCAATCCATCACTTTCAAACAGAACTGCAATTTGTAaattgcaaaattgc
aaaatgtctcGACCGGTAGAatgcaaaaaatataaaaataaattctcCGA
AATATCAAAAAGCGACGATAAATATACACCAAGAACCATTTAAATATCAC
CTTCAGAACTCGTATTCAATTGCATAAATTGCCGATTCAAAAATGCAAAA
GGTGGTCGATTGTCTGGATTCTTATTCCAACACTTCAACATTAATCTATA
AACTTCATCCGGGCAAGTTGCCGGTTGTTCTAATCGGAATACAAATTCCC
GATCGGGATGTTGAACGGATTCGCAGGCAGCCTCGATAATTTGTAAATCG
GTAAGTTCGGAGTAAGGTGATTCACGTGCAAAACTAAATATTTCCCATAA
AGTGACACCAAAACTCCAAATATCTGTAGGGTTCTTGAATGTACCTgtga
aataaaaggaagaaagaaaTGTATTAATTTACT
Run BLAST on NCBI

transcript from alignment at sc0000070:441778..442560

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006829 ID=TCONS_00006829|Name=TCONS_00006829|organism=Clytia hemisphaerica|type=transcript|length=783bp|location=Sequence derived from alignment at sc0000070:441778..442560 (Clytia hemisphaerica)
AGTAAATTAATACAtttctttcttccttttatttcacAGGTACATTCAAG
AACCCTACAGATATTTGGAGTTTTGGTGTCACTTTATGGGAAATATTTAG
TTTTGCACGTGAATCACCTTACTCCGAACTTACCGATTTACAAATTATCG
AGGCTGCCTGCGAATCCGTTCAACATCCCGATCGGGAATTTGTATTCCGA
TTAGAACAACCGGCAACTTGCCCGGATGAAGTTTATAGATTAATGTTGAA
GTGTTGGAATAAGAATCCAGACAATCGACCACCTTTTGCATTTTTGAATC
GGCAATTTATGCAATTGAATACGAGTTCTGAAGGTGATATTTAAATGGTT
CTTGGTGTATATTTATCGTCGCTTTTTGATATTTCGgagaatttattttt
atattttttgcatTCTACCGGTCgagacattttgcaattttgcaattTAC
AAATTGCAGTTCTGTTTGAAAGTGATGGATTGGCTAAGATAGTGTCGTGC
AGAGGTTAAACTGCACGCATCAGCTTTAGGAAGTCAATAATTGTACCAAT
ctctagccattcaaatttttaattcaaattgaatgaaatttaaagatttc
tCATATAAAACTTCTAATTATTtctctaaaactcaaaaacacaaagataG
GGGTAACTCTGGGACGGGAATTTGATACACGTTACGCATCCCACGTCAGA
GGGGTTACATATGCAGAGGTACTCATCTACTTAGAAGTTAAAGTTGTAAT
GCTAGACCCAATCTTTGGATGTGAAttcgaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003828XLOC_003828Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006829-exon-sc0000070-1491911889:441778..442560TCONS_00006829-exon-sc0000070-1491911889:441778..442560Clytia hemisphaericaexon
TCONS_00006829-exon-sc0000070-1510915933:441778..442560TCONS_00006829-exon-sc0000070-1510915933:441778..442560Clytia hemisphaericaexon
TCONS_00006829-exon-sc0000070-1575043694:441778..442560TCONS_00006829-exon-sc0000070-1575043694:441778..442560Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:441778..442560 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.1762	10.9696	3.28916	3.01253	21.1713	18.7716	27.2561	28.3438	20.4171	21.7415	14.1521	11.1965	16.6481	14.9413	15.8987	12.3915	21.3435	22.8751	23.6531	29.2891	23.6647	22.9108	20.339	20.9394	17.121	19.9589	69.2415	65.3038	43.9739	39.77
Blast
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BLAST of TCONS_00006829 vs. Swiss-Prot (Human)
Match: DDR2 (Discoidin domain-containing receptor 2 OS=Homo sapiens GN=DDR2 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 2.114e-21
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = -3 
Query:  470 GTFKNPTDIWSFGVTLWEIFSFARESPYSELTDLQIIEAACESVQHPDREFVFRLEQPATCPDEVYRLMLKCWNKNPDNRPPFAFLNRQFMQ 745
            G F   +D+W+FGVTLWE F+F +E PYS+L+D Q+IE   E  +   R+    L QPA CPD VY+LML CW ++  NRP F  ++   +Q
Sbjct:  762 GKFTTASDVWAFGVTLWETFTFCQEQPYSQLSDEQVIENTGEFFRDQGRQTY--LPQPAICPDSVYKLMLSCWRRDTKNRPSFQEIHLLLLQ 851
The following BLAST results are available for this feature:
BLAST of TCONS_00006829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDR22.114e-2146.74Discoidin domain-containing receptor 2 OS=Homo sap... [more]
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