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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006807 ID=TCONS_00006807|Name=TCONS_00006807|organism=Clytia hemisphaerica|type=transcript|length=508bp
atcaacctctgacgaGCAATATTTTTCTTGATATAGTTTTAGCCGAAGAA
AATCATTGATGTTTTTCTACTCATTGACTGGAGTTGCTTGTATAATTGCT
GGATCTTTGAAAAATGAGAGCACCAATTCAGCATTAATCTTAGCGTTGAT
TGGCAAGTTTGGAATCTCAGCTGCATTTGTAACCATCGACTTGTATACTG
TTGAATTATTCCCAACTGTTGTCAGAACATTAGGGATGGGAACGTGTATA
TTTTGGTCACGTGTTGGTGGCATGATTGCTCCACAAATACTCCTACTGGG
TGGTGTTTCGATCAATATTTTACCAACAATCATTATCGGAGTTATGGCTT
TGCTTGCTGCTCTAGATGTTTACTTTCTTCCTGAAACCTTCGGGAAACGT
CTACCAAACACTATTGAGGAANTGTTTACTTTCTTCCTGAAACCTTTGGG
AAACTTCTACCAAACACTATTgaggaaattgaaaaaactgacataaatta
aaaactaa Run BLAST on NCBI protein sequence of TCONS_00006807-protein >TCONS_00006807-protein ID=TCONS_00006807-protein|Name=TCONS_00006807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MFFYSLTGVACIIAGSLKNESTNSALILALIGKFGISAAFVTIDLYTVEL
FPTVVRTLGMGTCIFWSRVGGMIAPQILLLGGVSINILPTIIIGVMALLA
ALDVYFLPETFGKRLPNTIEEXFTFFLKPLGNFYQTLLRKLKKLT Run BLAST on NCBI transcript from alignment at sc0000070:668075..670464- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006807 ID=TCONS_00006807|Name=TCONS_00006807|organism=Clytia hemisphaerica|type=transcript|length=2390bp|location=Sequence derived from alignment at sc0000070:668075..670464- (Clytia hemisphaerica)
ATCAACCTCTGACGAGCAATATTTTTCTTGATATAGTTTTAGCCGAAGAA
AATCATTGATGTTTTTCTACTCATTGACTGGAGTTGCTTGTATAATTGCT
GGATCTTTGAAAAATGAGAGCACCAATTCAGCATTAATCTTAGCGTTGAT
TGGCAAGTTTGGAATCTCAGCTGCATTTGTAACCATCGACTTGTATACTG
TTGAATTATTCCCAACTGTTGTCAGGTATTTATTGAAAACCTTTACTGAT
CGGAACAAACCATTTGAAATTTGAAAACGTCCTTAGCTTTTTCACAGTAC
CGTGAAAAGCACAGCTCAAAATCATATATTTACGCTGTGCCGACGAATCG
AGATTCTATTCATCGCGCAATCAGCGAAGACAAAAGTCACCATGACNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTTCACAGTCCTAGAACCTCCTACTTTAGGTGCG
GCCCTTAAAGGGTAAAACTGTCAGGCTTCCCAAATTTCACTGTAATGATA
AGAAGGAGAGTCAGAGAACTGTTAAGGTGTAAAATCTAAGAACAAAAAAA
GGTTTTGGGAAAATATTTCGAATATCTAACTATTGATGAACGATTTTTTG
CTCCAAACCGAGGAAAGTTCTTAGCAAAGTTTTCTCTACCCTGCAAACGT
TCAAATTGAGACCCTAATTTTTGTCAACACTTTCAAACCTTGCACCTCTC
CCCGGGGGTCGGACAAATCATTCTAAAGTTATCATGTTTGATACCTTTAA
CATTTCCAAGTTAAAGATACGTACTCAGAAAGTTAACTTTCTCGAGTTGA
ATTTTTTGAACTTCTTAAATTTGTTATAGAACATTAGGGATGGGAACGTG
TATATTTTGGTCACGTGTTGGTGGCATGATTGCTCCACAAATACTCCTAC
TGGTAAGTTTAAATGTTATCATTTCAAAACATTTGATAACATTAAGCTTT
AGACCCCGTTAGAGCTTCTCGTGGACAGCTCCTACACACTCCCTTCTCAC
AGGCCCCCTGGGAATACTTCCCACTGGAAAATTATCCTCCAATTTTTGTC
CCCACTGAAAATGATCAAATAAACCAATCCTGCAAAATATGATTCTTTAT
TTCCCATCCCCATGTCATTGAACTTTCTGACTTGAGAACAAAAAAAATGA
AATCCCGGTCATAAAAATTATTGGAATATCAATCTCCATCGAGTTTCAGT
CCTTTACTTTTATCCCCACTGTCTGAAAAAATCCTACCGGGTCTGTTAGA
AGGGGGTGTTTGCCTTTAAGGCCGAACGTGTAACATCTGTATCTCAAGGT
TTTGATGAAGAAGATTTCGATCACATACTTGCACTGCAATGAACTGTGTT
CGAATTCCAAGCACTTCCATGCAGGGTTAGGGTAGCATGATAATTTCTCC
ACCTTTTCTGATAGTATTTCCTGATTTCAGGGTGGTGTTTCGATCAATAT
TTTACCAACAATCATTATCGGAGTTATGGCTTTGCTTGCTGCTCTAGATG
TTTACTTTCTTCCTGAAACCTTCGGGAAACGTCTACCAAACACTATTGAG
GAANTGTTTACTTTCTTCCTGAAACCTTTGGGAAACTTCTACCAAACACT
ATTGAGGAAATTGAAAAAACTGACATAAATTAAAAACTAA Coding sequence (CDS) from alignment at sc0000070:668075..670464- >TCONS_00006807 ID=TCONS_00006807|Name=TCONS_00006807|organism=Clytia hemisphaerica|type=CDS|length=1314bp|location=Sequence derived from alignment at sc0000070:668075..670464- (Clytia hemisphaerica)
GGTGGTGTTTCGATCAATATTTTACCAACAATCATTATCGGAGTTATGGC
TTTGCTTGCTGCTCTAGATGTTTACTTTCTTCCTGAAACCTTCGGGAAAC
GTCTACCAAACACTATTGAGGAANTGTTTACTTTCTTCCTGAAACCTTTG
GGAAACTTCTACCAAACACTATTGAGGAAATTGAAAAAACTGACATAAAA
CATTAGGGATGGGAACGTGTATATTTTGGTCACGTGTTGGTGGCATGATT
GCTCCACAAATACTCCTACTGATGTTTTTCTACTCATTGACTGGAGTTGC
TTGTATAATTGCTGGATCTTTGAAAAATGAGAGCACCAATTCAGCATTAA
TCTTAGCGTTGATTGGCAAGTTTGGAATCTCAGCTGCATTTGTAACCATC
GACTTGTATACTGTTGAATTATTCCCAACTGTTGTCAGGGTGGTGTTTCG
ATCAATATTTTACCAACAATCATTATCGGAGTTATGGCTTTGCTTGCTGC
TCTAGATGTTTACTTTCTTCCTGAAACCTTCGGGAAACGTCTACCAAACA
CTATTGAGGAANTGTTTACTTTCTTCCTGAAACCTTTGGGAAACTTCTAC
CAAACACTATTGAGGAAATTGAAAAAACTGACATAAAACATTAGGGATGG
GAACGTGTATATTTTGGTCACGTGTTGGTGGCATGATTGCTCCACAAATA
CTCCTACTGATGTTTTTCTACTCATTGACTGGAGTTGCTTGTATAATTGC
TGGATCTTTGAAAAATGAGAGCACCAATTCAGCATTAATCTTAGCGTTGA
TTGGCAAGTTTGGAATCTCAGCTGCATTTGTAACCATCGACTTGTATACT
GTTGAATTATTCCCAACTGTTGTCAGGGTGGTGTTTCGATCAATATTTTA
CCAACAATCATTATCGGAGTTATGGCTTTGCTTGCTGCTCTAGATGTTTA
CTTTCTTCCTGAAACCTTCGGGAAACGTCTACCAAACACTATTGAGGAAN
TGTTTACTTTCTTCCTGAAACCTTTGGGAAACTTCTACCAAACACTATTG
AGGAAATTGAAAAAACTGACATAAAACATTAGGGATGGGAACGTGTATAT
TTTGGTCACGTGTTGGTGGCATGATTGCTCCACAAATACTCCTACTGATG
TTTTTCTACTCATTGACTGGAGTTGCTTGTATAATTGCTGGATCTTTGAA
AAATGAGAGCACCAATTCAGCATTAATCTTAGCGTTGATTGGCAAGTTTG
GAATCTCAGCTGCATTTGTAACCATCGACTTGTATACTGTTGAATTATTC
CCAACTGTTGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006807-exon-sc0000070-1575043694:670240..670464 | TCONS_00006807-exon-sc0000070-1575043694:670240..670464 | Clytia hemisphaerica | exon |
| TCONS_00006807-exon-sc0000070-1575043694:668813..668885 | TCONS_00006807-exon-sc0000070-1575043694:668813..668885 | Clytia hemisphaerica | exon |
| TCONS_00006807-exon-sc0000070-1575043694:668075..668284 | TCONS_00006807-exon-sc0000070-1575043694:668075..668284 | Clytia hemisphaerica | exon |
| TCONS_00006807-exon-sc0000070-1510915933:670240..670464 | TCONS_00006807-exon-sc0000070-1510915933:670240..670464 | Clytia hemisphaerica | exon |
| TCONS_00006807-exon-sc0000070-1510915933:668813..668885 | TCONS_00006807-exon-sc0000070-1510915933:668813..668885 | Clytia hemisphaerica | exon |
| TCONS_00006807-exon-sc0000070-1510915933:668075..668284 | TCONS_00006807-exon-sc0000070-1510915933:668075..668284 | Clytia hemisphaerica | exon |
| TCONS_00006807-exon-sc0000070-1491911889:670240..670464 | TCONS_00006807-exon-sc0000070-1491911889:670240..670464 | Clytia hemisphaerica | exon |
| TCONS_00006807-exon-sc0000070-1491911889:668813..668885 | TCONS_00006807-exon-sc0000070-1491911889:668813..668885 | Clytia hemisphaerica | exon |
| TCONS_00006807-exon-sc0000070-1491911889:668075..668284 | TCONS_00006807-exon-sc0000070-1491911889:668075..668284 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000070 | supercontig | sc0000070:668075..670464 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020846 | MFS_dom |
Blast
BLAST of TCONS_00006807 vs. Swiss-Prot (Human)
Match: S22A5 (Solute carrier family 22 member 5 OS=Homo sapiens GN=SLC22A5 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.382e-19 Identity = 42/97 (43.30%), Postives = 66/97 (68.04%), Query Frame = 2
Query: 131 ALILALIGKFGISAAFVTIDLYTVELFPTVVRTLGMGTCIFWSRVGGMIAPQILLLGGVSINILPTIIIGVMALLAALDVYFLPETFGKRLPNTIEE 421
A +L ++GKFG++AAF + +YT EL+PTVVR +G+G SR+G +++P + LG LP I++G + +L A+ FLPE+FG LP+TI++
Sbjct: 428 ATVLVMVGKFGVTAAFSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPYFVYLGAYD-RFLPYILMGSLTILTAILTLFLPESFGTPLPDTIDQ 523
The following BLAST results are available for this feature:
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