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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006796 ID=TCONS_00006796|Name=TCONS_00006796|organism=Clytia hemisphaerica|type=transcript|length=1422bpRun BLAST on NCBI protein sequence of TCONS_00006796-protein >TCONS_00006796-protein ID=TCONS_00006796-protein|Name=TCONS_00006796-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp DECSVITSPCHANAACTNTLGAFTCVCDDGFYGDGQQCSGILPNPPHLTSRun BLAST on NCBI transcript from alignment at sc0000070:481494..484039- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006796 ID=TCONS_00006796|Name=TCONS_00006796|organism=Clytia hemisphaerica|type=transcript|length=2546bp|location=Sequence derived from alignment at sc0000070:481494..484039- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000070:481494..484039- >TCONS_00006796 ID=TCONS_00006796|Name=TCONS_00006796|organism=Clytia hemisphaerica|type=CDS|length=4266bp|location=Sequence derived from alignment at sc0000070:481494..484039- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006796 vs. Swiss-Prot (Human)
Match: CELR2 (Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens GN=CELSR2 PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.594e-31 Identity = 103/329 (31.31%), Postives = 153/329 (46.50%), Query Frame = 1
Query: 454 PKFDLDSYATYVSESARAGDSILQVNIINRNATQREEIFYSLIATDHNFGFFNITDSGSISLLKSLDYEQYTEFIFSIVAYDKIGDISSENTPVRILVANENDHNPVIDNSTYFVTISESIGVNTEILRVSASDGDALGEGNKDHQSTTFGIVFRNDSNKFTMTQD---GILTVNTALNYEAATSYKLSFLAYNLDGTQSSLADIYITILNANEHAPVFTQANYHWYINENNHPASFND--ISATDIDGGVDEGMSNIGYSLLTSTPVLTINPTSGLITLQQPLNYESISQYLFTVQASD-GI--FTSTANLHIHVLNLNDNDPVFGDD 1416
P F + V ES G +L V I+ +A + Y L H+F F +G IS+ LD E+ + F + A D + + V + V + ND+NP Y V ++E V T ++ VSA D DA H T+ I N N+F++T G++++ L+Y+ Y L+ A DGT+ A I + + +AN H PVF ++Y +NE + PA ISATD D G + + I Y + S P I+ +G +T Q L+YE Y + A D GI + T L I V ++NDN P F D
Sbjct: 503 PIFVSTPFQATVLESVPLGYLVLHVQAIDADAGDNARLEYRLAGVGHDFPFTINNGTGWISVAAELDREEVDFYSFGVEARDHGTPALTASASVSVTVLDVNDNNPTFTQPEYTVRLNEDAAVGTSVVTVSAVDRDA-------HSVITYQITSGNTRNRFSITSQSGGGLVSLALPLDYKLERQYVLAVTAS--DGTRQDTAQIVVNVTDANTHRPVFQSSHYTVNVNE-DRPAGTTVVLISATDEDTGEN---ARITYFMEDSIPQFRIDADTGAVTTQAELDYEDQVSYTLAITARDNGIPQKSDTTYLEILVNDVNDNAPQFLRD 818 HSP 2 Score: 110.153 bits (274), Expect = 2.552e-25 Identity = 88/340 (25.88%), Postives = 166/340 (48.82%), Query Frame = 1
Query: 454 PKFDLDSYATYVSESARAGDSILQVNIINRNATQREEIFYSLIA--TDHNFGFFNITD-SGSISLLKSLDYEQYTEFIFSIVAYDKIGDISSENTPVRILVANENDHNPVIDNSTYFVTISESIGVNTEILRVSASDGDA---------LGEGNKDHQSTTFGIVFRNDSNKFTMTQDGILTVNTALNYEAATSYKLSFLAYNLD---GTQSSLADIYITILNANEHAPVFTQANYHWYINENNHP-ASFNDISATDIDGGVDEGMSNIGYSLLTSTP--VLTINPTSGLITLQQPLNYESISQYLFTVQASDGIFTSTANLH----IHVLNLNDNDPVF 1407
P+F SY V E+ AG + + I+ + + + Y++ A + FF++ +G+++ + LD E + +F + A D S + ILV + NDH+PV + Y ++ E++ V E+L V A+DGDA L EG+ S F I R+ G++ ++ E SY+L+ A + G +S+ A +++++ + N++AP F++ Y + E+ P A ++A+D D G + + + YS+++ ++ +G + + PL+YE+ +Y V+A DG +N+ + VL++NDN P+F
Sbjct: 179 PQFQPPSYQATVPENQPAGTPVASLRAIDPDEGEAGRLEYTMDALFDSRSNQFFSLDPVTGAVTTAEELDRETKSTHVFRVTAQDHGMPRRSALATLTILVTDTNDHDPVFEQQEYKESLRENLEVGYEVLTVRATDGDAPPNANILYRLLEGSGGSPSEVFEIDPRS----------GVIRTRGPVDREEVESYQLTVEASDQGRDPGPRSTTAAVFLSVEDDNDNAPQFSEKRYVVQVREDVTPGAPVLRVTASDRDKGSN---AVVHYSIMSGNARGQFYLDAQTGALDVVSPLDYETTKEYTLRVRAQDGGRPPLSNVSGLVTVQVLDINDNAPIF 505 HSP 3 Score: 109.383 bits (272), Expect = 4.178e-25 Identity = 110/445 (24.72%), Postives = 189/445 (42.47%), Query Frame = 1
Query: 130 NPPHLTSNSYTVIIGNNTQLGEFVEEIKAISLDESGTVVQ--TSG------VIETDDCNSAFTLFLPTHSKSSFYIKLVKNATD--VMDTCSIKLRFSTPTGXXXXXXXXXXRRPYDRPKFDLDSYATYVSESARAGDSILQVNIINRNATQREEIFYSLIATDHNFGFFNI-TDSGSISLLKSLDYEQYTEFIFSIVAYDKIGDISSENTPVRILVANENDHNPVIDNSTYFVTISESIGVNTEILRVSASDGDALGEGNKDHQSTTFGIVFRNDSNKFTMTQDGILTVNTALNYEAATSYKLSFLAYNLDG---TQSSLADIYITILNANEHAPVFTQANYHWYINENNHPA-SFNDISATDIDGGVDEGMSNIGYSLLTST--PVLTINPTSGLITLQQPLNYESISQYLFTVQASDGIFTSTANLHIHVLNLNDNDPVFGD 1413
N P T YTV + + +G V + A+ D + TSG I + +L LP K L A+D DT I + + RP F Y V+E AG +++ ++ + + + I Y + + + F I D+G+++ LDYE + +I A D S+ T + ILV + ND+ P +Y ++ E + T +L++SA+D D+ G TF D + + GI+ L+ E Y L AY +D + ++ +T+L+ N++ PVF Q + ++ EN+ + ++ATD D G + + I Y ++ V ++ SG +T L+YE +Y+ +QA+ S A +H+ +L+ NDN PV G+
Sbjct: 606 NNPTFTQPEYTVRLNEDAAVGTSVVTVSAVDRDAHSVITYQITSGNTRNRFSITSQSGGGLVSLALPLDYKLERQYVLAVTASDGTRQDTAQIVVNVTDANT--------------HRPVFQSSHYTVNVNEDRPAGTTVVLISATDEDTGENARITYFM---EDSIPQFRIDADTGAVTTQAELDYEDQVSYTLAITARDNGIPQKSDTTYLEILVNDVNDNAPQFLRDSYQGSVYEDVPPFTSVLQISATDRDS---GLNGRVFYTFQGGDDGDGDFIVESTSGIVRTLRRLDRENVAQYVLR--AYAVDKGMPPARTPMEVTVTVLDVNDNPPVFEQDEFDVFVEENSPIGLAVARVTATDPDEGTN---AQIMYQIVEGNIPEVFQLDIFSGELTALVDLDYEDRPEYVLVIQATSAPLVSRATVHVRLLDRNDNPPVLGN 1025 HSP 4 Score: 103.605 bits (257), Expect = 3.111e-23 Identity = 90/334 (26.95%), Postives = 157/334 (47.01%), Query Frame = 1
Query: 448 DRPKFDLDSYATYVSESARAGDSILQVNIINRNATQREEIFYSLIA--TDHNFGFFNITDSGSISLLKSLDYEQYTEFIFSIVAYDKIGDISSENTPVRILVANENDHNPVIDNSTYFVTISESIGVNTEILRVSASDGDALGEGNKDHQSTTFGIVFRNDS-NKFTMTQD-GILTVNTALNYEAATSYKLSFLAYNLDGTQSSLADIYITIL--NANEHAPVFTQANYHWYINENNHP-ASFNDISATDIDGGVDEGMSNIGYSLLTSTPVLTINPTSGLITLQQPLNYESISQYLFTVQASDGIFT---STANLHIHVLNLNDNDPVFGDDD 1419
+ P F Y ++E A G S++ V+ ++R+A I Y + + T + F + + G +SL LDY+ +++ ++ A D + + + V + N H PV +S Y V ++E T ++ +SA+D D GE + T+ F DS +F + D G +T L+YE SY L+ A + +G Y+ IL + N++AP F + +Y + E+ P S ISATD D G++ + + TSG++ + L+ E+++QY+ A D + + + VL++NDN PVF D+
Sbjct: 606 NNPTFTQPEYTVRLNEDAAVGTSVVTVSAVDRDA--HSVITYQITSGNTRNRFSITSQSGGGLVSLALPLDYKLERQYVLAVTASD---GTRQDTAQIVVNVTDANTHRPVFQSSHYTVNVNEDRPAGTTVVLISATDEDT-GENAR----ITY---FMEDSIPQFRIDADTGAVTTQAELDYEDQVSYTLAITARD-NGIPQKSDTTYLEILVNDVNDNAPQFLRDSYQGSVYEDVPPFTSVLQISATDRDSGLNGRVFYTFQGGDDGDGDFIVESTSGIVRTLRRLDRENVAQYVLRAYAVDKGMPPARTPMEVTVTVLDVNDNPPVFEQDE 925 HSP 5 Score: 102.834 bits (255), Expect = 5.451e-23 Identity = 87/326 (26.69%), Postives = 150/326 (46.01%), Query Frame = 1
Query: 454 PKFDLDSYATYVSESARAGDSILQVNIINRNATQREEIFYSLIATDHNFGFFNITDSGSISLLKSLDYEQYTEFIFSIVAYDK-IGDISSENTPVRILVANENDHNPVIDNSTYFVTISESIGVNTEILRVSASDGDALGEGNKDHQSTTFGIVFRNDSNKFTMTQDGILTVNTALNYEAATSYKLSFLAYNLDGTQ--SSLADIYITILNANEHAPVFTQANYHWYINENNH-PASFNDISATDIDGGVDEGMSNIGYSLLTSTP----VLTINPTSGLITLQQPLNYESISQYLFTVQASDGIFTSTANLHIHVLNLNDNDPVF 1407
P+F Y V E G +L+V +R+ + YS+++ + F+ +G++ ++ LDYE E+ + A D +S+ + V + V + ND+ P+ ++ + T+ ES+ + +L V A D DA +++ G F N T G ++V L+ E Y A + GT ++ A + +T+L+ N++ P FTQ Y +NE+ S +SA D D S I Y + + +T GL++L PL+Y+ QY+ V ASDG TA + ++V + N + PVF
Sbjct: 397 PQFSEKRYVVQVREDVTPGAPVLRVTASDRDKGSNAVVHYSIMSGNARGQFYLDAQTGALDVVSPLDYETTKEYTLRVRAQDGGRPPLSNVSGLVTVQVLDINDNAPIFVSTPFQATVLESVPLGYLVLHVQAIDADAGDNARLEYRLAGVGHDFPFTINNGT----GWISVAAELDREEVDFYSFGVEARD-HGTPALTASASVSVTVLDVNDNNPTFTQPEYTVRLNEDAAVGTSVVTVSAVDRD-----AHSVITYQITSGNTRNRFSITSQSGGGLVSLALPLDYKLERQYVLAVTASDGTRQDTAQIVVNVTDANTHRPVF 712 The following BLAST results are available for this feature:
BLAST of TCONS_00006796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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