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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006782 ID=TCONS_00006782|Name=TCONS_00006782|organism=Clytia hemisphaerica|type=transcript|length=3703bpRun BLAST on NCBI protein sequence of TCONS_00006782-protein >TCONS_00006782-protein ID=TCONS_00006782-protein|Name=TCONS_00006782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=613bp MDSFVLAETFKYLYLLFSEESEHVIDVHNFIFTTEAHLLPLHISLTPAPTRun BLAST on NCBI transcript from alignment at sc0000070:262757..291362- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006782 ID=TCONS_00006782|Name=TCONS_00006782|organism=Clytia hemisphaerica|type=transcript|length=28606bp|location=Sequence derived from alignment at sc0000070:262757..291362- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000070:262757..291362- >TCONS_00006782 ID=TCONS_00006782|Name=TCONS_00006782|organism=Clytia hemisphaerica|type=CDS|length=18420bp|location=Sequence derived from alignment at sc0000070:262757..291362- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006782 vs. Swiss-Prot (Human)
Match: EDEM3 (ER degradation-enhancing alpha-mannosidase-like protein 3 OS=Homo sapiens GN=EDEM3 PE=1 SV=2) HSP 1 Score: 520.776 bits (1340), Expect = 1.464e-165 Identity = 264/429 (61.54%), Postives = 334/429 (77.86%), Query Frame = 1
Query: 121 EKVRLKEKVVEMFNHAYGAYKKYAHPADELMPLSCRGRYRGSEKNRGDIDEALGNFSXXXXXXXXXXXXXGQIEEFETQVHYVIDNVKFDADAIVSVFETNIRVLGGLLGAHSMAVTLKNDGKGMFWYDKELLEKATILADKLLLAFNTSTGIPYPKINLKYGIHHPESRVGHETHTCTACAGTMIMEFAALSRLTGXTACAGTMIMEFAALSRLTGNPIYEEKAHKAMEALWKFRSHHSDLVGTTINIHSGDWTRRDSGVGAGIDSYYEYCLKAYILLGDETYRDKFNKHYAAIKKYIRQGYMMLDVYMHQPDVPARSFIDALQAFWPGLQVLKGDLQPAIETHEILYNVAKKYKFLPEAFTTSLDLYWAQHPLRPEFIESTYFLHQATKDPYYLEVGKHVIDTLEEHARVKCGYAAFKDLRTFAHED 1407
EK +L +V+EMF+HAYG Y ++A+PADELMPL+CRGR RG E +RGD+D+ALG FSLTL+D+LDTLVVL + +EFE V V+ +V D D +VSVFETNIRVLGGLLG HS+A+ LK G+ M WY+ ELL+ A L KLL AFNT++G+PYP+INLK+GI PE+R G ET TCTACAG T+I+EFAALSR TG I+EE A KA++ LW+ R S+LVG TINIH+GDW R+DSGVGAGIDSYYEY LKAY+LLGD+++ ++FN HY AI +YI Q ++LDV++H+P + AR+++DAL AF+PGLQVLKGD++PAIETHE+LY V KK+ FLPEAFTT ++WAQHPLRPEF ESTYFL++AT DPYYLEVGK +I+ L ++ARV CG+AA KD+RT +HED
Sbjct: 48 EKQKLGNQVLEMFDHAYGNYMEHAYPADELMPLTCRGRVRGQEPSRGDVDDALGKFSLTLIDSLDTLVVLNKTKEFEDAVRKVLRDVNLDNDVVVSVFETNIRVLGGLLGGHSLAIMLKEKGEYMQWYNDELLQMAKQLGYKLLPAFNTTSGLPYPRINLKFGIRKPEARTGTETDTCTACAG--------------------TLILEFAALSRFTGATIFEEYARKALDFLWEKRQRSSNLVGVTINIHTGDWVRKDSGVGAGIDSYYEYLLKAYVLLGDDSFLERFNTHYDAIMRYISQPPLLLDVHIHKPMLNARTWMDALLAFFPGLQVLKGDIRPAIETHEMLYQVIKKHNFLPEAFTTDFRVHWAQHPLRPEFAESTYFLYKATGDPYYLEVGKTLIENLNKYARVPCGFAAMKDVRTGSHED 456 HSP 2 Score: 225.713 bits (574), Expect = 1.075e-60 Identity = 134/375 (35.73%), Postives = 213/375 (56.80%), Query Frame = 3
Query: 1410 RVKCGYAAFKDLRTFAHEDKMDSFVLAETFKYLYLLFSEESEHVIDVHNFIFTTEAHLLPLHISLXXXXXXXXXXXXXXXXXXXXFEGKKNLNLTVELDDHSI--SCPNTKYL-SNLNNFAEVIRKNMNSGVSGYATKKNPFCSKNGIDKEYAKINAESFIKKIKFETVLR---KRKITVKEFNVNDATHIGLLRDMGIKIQKESNGKIQLQHQSNEAKTTEDAKEGILFMQEMIEYAKETGITDELSKPRHVKIVTTP-HNNLMFSGGYAQFGPDLDQ-QAIQGELVQAEPFNSCQNIANAGDLINRIVVLQRGGCMFIDKARLVEKLGAIGAIIVDHNKGTTFATAAPFGMSGD-DNPSNVGIPAIFLFNKEG 2507
RV CG+AA KD+RT +HED+MDSF LAE FKYLYLLF+++ + + D+ ++IFTTEAHLLPL +S N++ K + ELDD + +CPNT+ L N +A+ IR+ + KN +DK + I+ E R K + ++F + H+ +L+ MG+ + +G++QL + +A ++ DA++G+ FMQEMIE + + +L PR V+IV+ P ++ + G AQFG DL + + +G + ++P N C + N ++ +I ++QRG CMF +KAR ++ GAIG I++D N+G++ TA F M+GD + ++ IP +FLF+KEG
Sbjct: 438 RVPCGFAAMKDVRTGSHEDRMDSFFLAEMFKYLYLLFADKEDIIFDIEDYIFTTEAHLLPLWLS----------------TTNQSISKKNTTSEYTELDDSNFDWTCPNTQILFPNDPLYAQSIREPL----------------KNVVDKSCPR-------GIIRVEESFRSGAKPPLRARDFMATNPEHLEILKKMGVSLIHLKDGRVQLVQHAIQAASSIDAEDGLRFMQEMIELSSQQQKEQQL-PPRAVQIVSHPFFGRVVLTAGPAQFGLDLSKHKETRGFVASSKPSNGCSELTNPEAVMGKIALIQRGQCMFAEKARNIQNAGAIGGIVIDDNEGSSSDTAPLFQMAGDGKDTDDIKIPMLFLFSKEG 772 The following BLAST results are available for this feature:
BLAST of TCONS_00006782 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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