TCONS_00006780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006780
Unique NameTCONS_00006780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1824

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006780 ID=TCONS_00006780|Name=TCONS_00006780|organism=Clytia hemisphaerica|type=transcript|length=1824bp
ACCTGATTTTTATCGCCTAATATTTGCGCCATTTGTACTTGAGCTGGCAT
TTCTCCGCTCGTTGACGCTTGCTTCATCAATAACATGTGCGTTCGACTTG
CTGCGTCATCGAAGTTCTCCTCTTCTGTGTTTTTACTCTCTCCATCGGAT
TGCTTGTTATCAAACTCCTCCTGGGAGGCTTCCCAAATATCTTGGGGCGT
TCTCGGGCGTTTGTTTTCATCATCACTTTCACCGCCTTTCGGTTTTTCTT
CTTGTGGAGATACTGTCTcctgattggttgaaatttcAGTGATTTCTTGA
TCGTCTTGTTTCGAGATTTCAGGGACTTTTTCTGGTTCGAAGAATAGTCC
TCTCGTAGATGAGAGTCGAGGAGATTTTCCTTTCGCTCTACCTTTCTGGA
AGAACATATCATCGCCAACTCCTGATAAACGGGACGGAGGCTTCTTGAAA
GAAATCTCCTTGTCTTTGCTGTTATCCTGGAACATGCTTCTCACACTCGA
CACGCTCGTGTTCAATGCGTCAATTTCTTCGTCTTTCGGTTTAAGCATAG
GTGCCtcgtcttcatttttcttttgaaacATATCCCTGAAGCTTGACACA
CGATCTCTACCTTGAGGCATTTCTTCCTCGTTGGAAATTGATTGTGACTC
TTCCTTAACAGGAGATGAGACATTTAGATCGGCTTTAGAGCTATCTTGAT
TTGTACTTGAATCAAGGTTTAGAGTGTAATCTAGCACTGATTCTTGTGAT
GAAGTGCTTCGGGTTGAATCGAGAGTCGATTCGACGGGTGAGCTGACGAC
GCTTGGTACAGATTGAGGTGGAGGTTGTGGAGTGGACGGGGAATTCTTTG
CAGAGGAAGTCGTTTGAACTTTGCCCCACTTGCTCACTTTCTTTTCCGAT
TTAACCGGAGGTATTTTCTCGTTCTCATTTCCTTTCTGTTTCTCTTCGAA
AAAGGATTTCGAGATTTTCCCCACTTTCGGTTTTTCAGATGTCTGAGCTG
ATGACTGTGTAGATTCCCCGAAAATCGATCGGGATAACTTCCCCGGTTTC
GGTTTACTTTCGGGAGCAGTTTCCGTAGTGGGAGACAGTTTACGGAACAT
GTCTCTAGCAGCAGATACTGAAAGACTGTTTTCTGCGTCTTGCTGGGCCT
CTTCTACTTCAGTTCGGTCCGGGACACCGTTGTTTTGAGGAGAGGTTTCC
ACCGTATTATCAGTATTGTTCCGGTTTAATTGTAGGGTTTCCGGCCTTTT
CGGTGTAAAATTACGCTCATTTCTTTCTTTGGCTTTCATGACAACTTCGT
TGGGTAAACCGTTGCGTATATTTGTTAAATTACTATTTTGTTGACTTTCA
AATCTTTGGCTTGAGCTTGCAACAGAAGTTCGGGCTGGAGGTGGTGGAGC
ATTCTGACTCTTTAATATGAAAGGTTGTTTACTTGGAGAGCTTGAATTTT
CTTCAGTGGCGATCCCATTAGGACTGCTTTTGGGTGGAGGACGACTGGAA
GGAGGGCGGTTTGACGGTGGGCGGTCGTTATTATTTTTGGTATTATTTAC
GCCCATGAAAGATGAGCCAGATGGATTTTTAAAGCTGTTTGGTTTTGAAT
AACCATTGCTTGATCCATACGATCCATTCGATGTTGAATTATGGCTCTTT
TGGCTACTCGTGTAGTTGGCATTCTGGCTGTAAGTTTGGCCGTTATTTGC
AAACGATACACCGTTCGATTTGACAGGCGATTTGACTGGAGAACTTCCGT
TTGATTTGATAGGTGACGTTGGTTTTGAGGAAAGAAGACTGTTGTTGCCA
CCGTTGAAGAATTGTTGTCTATCT
Run BLAST on NCBI

transcript from alignment at sc0000070:245882..249015-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006780 ID=TCONS_00006780|Name=TCONS_00006780|organism=Clytia hemisphaerica|type=transcript|length=3134bp|location=Sequence derived from alignment at sc0000070:245882..249015- (Clytia hemisphaerica)
ACCTGATTTTTATCGCCTAATATTTGCGCCATTTGTACTTGAGCTGGCAT
TTCTCCGCTCGTTGACGCTTGCTTCATCAATAACATGTGCGTTCGACTTG
CTGCGTCATCGAAGTTCTCCTCTTCTGTGTTTTTACTCTCTCCATCGGAT
TGCTTGTTATCAAACTCCTCCTGGGAGGCTTCCCAAATATCTTGGGGCGT
TCTCGGGCGTTTGTTTTCATCATCACTTTCACCGCCTTTCGGTTTTTCTT
CTTGTGGAGATACTGTCTCCTGATTGGTTGAAATTTCAGTGATTTCTTGA
TCGTCTTGTTTCGAGATTTCAGGGACTTTTTCTGGTTCGAAGAATAGTCC
TCTCGTAGATGAGAGTCGAGGAGATTTTCCTTTCGCTCTACCTTTCTGGA
AGAACATATCATCGCCAACTCCTGATAAACGGGACGGAGGCTTCTTGAAA
GAAATCTCCTTGTCTTTGCTGTTATCCTGGAACATGCTTCTCACACTCGA
CACGCTCGTGTTCAATGCGTCAATTTCTTCGTCTTTCGGTTTAAGCATAG
GTGCCTCGTCTTCATTTTTCTTTTGAAACATATCCCTGAAGCTTGACACT
CGATCTCTACCTTGAGGCATTTCTTCCTCGTTGGAAATTGATTGTGACTC
TTCCTTAACAGGAGATGAGACATTTAGATCGGCTTTAGAGCTATCTTGAT
TTGTACTTGAATCAAGGTTTAGAGTGTAATCTAGCACTGATTCTTGTGAT
GAAGTGCTTCGGGTTGAATCGAGAGTCGATTCGACGGGTGAGCTGACGAC
GCTTGGTACAGATTGAGGTGGAGGTTGTGGAGTGGACGGGGAATTCTTTG
CAGAGGAAGTCGTTTGAACTTTGCCCCACTTGCTCACTTTCTTTTCCGAT
TTAACCGGAGGTATTTTCTCGTTCTCATTTCCTTTCTGTTTCTCTTCGAA
AAAGGATTTCGAGATTTTCCCCACTTTCGGTTTTTCAGATGTCTGAGCTG
ATGACTGTGTAGATTCCCCGAAAATCGATCGGGATAACTTCCCCGGTTTC
GGTTTACTTTCGGGAGCAGTTTCCGTAGTGGGAGACAGTTTACGGAACAT
GTCTCTAGCAGCAGATACTGAAAGACTGTTTTCTGCGTCTTGCTGGGCCT
CTTCTACTTCAGCTCGTTCCGGGACACCGTTGTTTTGAGGAGAGGTTTCC
ACCGTATTATCAGTATTGTTCCGGTTTAATTGTAGGGTTTCCGGCCTTTT
CGGTGTAAAATTACGCTCATTTCTTTCTTTGGCTTTCATGACAACTTCGT
TGGGTAAACCGTTGCGTATATTTGTTAAATTACTATTTTGTTGACTTTCA
AATCTTTGGCTTGAGCTTGCAACAGAAGTTCGGGCTGGAGGTGGTGGAGC
ATTCTGACTCTTTAATATGAAAGGTTGTCTGCTTGGAGAGCTTGAATTTT
CTTCTGTGGCGTTCCCATTAGGACTGCTTTTGGGTGGAGGACGACTGGAA
GGAGGGCGGTTTGACGGTGGGCGGTCGTTATTATTTTTGGTATTATTTAC
GCCCATGAAAGATGAGCCAGATGGATTTTTAAAGCTGTTTGGTTTTGAAT
AACCATTGCTTGATCCATACGATCCATTCGATGTTGAATTATGGCTCTTT
TGGCTACTCGTGTAGTTGGCATTCTGGCTGTAAGTTTGGCCGTTATTTGC
AAACGATACACCGTTCGATTTGACTGGCGATTTGACTGGAGAACTTCCGT
TTGATTTGATAGGTGACGTTGGTTTTGAGGAATGAAGACTGTTGTTGCCA
CCGTTGAAGAATTGTTGTCTATCTTGCCAACTGTTGGTCTTTGTACTTTC
TTTCTCTTCTTCTTCGTATTCTTCNTTTTCTTTTGAAACATATCCCTGAA
GCTTGACACACGATCTCTACCTTGAGGCATTTCTTCCTCGTTGGAAATTG
ATTGTGACTCTTCCTTAACAGGAGATGAGACATTTAGATCGGCTTTAGAG
CTATCTTGATTTGTACTTGAATCAAGGTTTAGAGTGTAATCTAGCACTGA
TTCTTGTGATGAAGTGCTTCGGGTTGAATCGAGAGTCGATTCGACGGGTG
AGCTGACGACGCTTGGTACAGATTGAGGTGGAGGTTGTGGAGTGGACGGG
GAATTCTTTGCAGAGGAAGTCGTTTGAACTTTGCCCCACTTGCTCACTTT
CTTTTCCGATTTAACCGGAGGTATTTTCTCGTTCTCATTTCCTTTCTGTT
TCTCTTCGAAAAAGGATTTCGAGATTTTCCCCACTTTCGGTTTTTCAGAT
GTCTGAGCTGATGACTGTGTAGATTCCCCGAAAATCGATCGGGATAACTT
CCCCGGTTTCGGTTTACTTTCGGGAGCAGTTTCCGTAGTGGGAGACAGTT
TACGGAACATGTCTCTAGCAGCAGATACTGAAAGACTGTTTTCTGCGTCT
TGCTGGGCCTCTTCTACTTCAGTTCGGTCCGGGACACCGTTGTTTTGAGG
AGAGGTTTCCACCGTATTATCAGTATTGTTCCGGTTTAATTGTAGGGTTT
CCGGCCTTTTCGGTGTAAAATTACGCTCATTTCTTTCTTTGGCTTTCATG
ACAACTTCGTTGGGTAAACCGTTGCGTATATTTGTTAAATTACTATTTTG
TTGACTTTCAAATCTTTGGCTTGAGCTTGCAACAGAAGTTCGGGCTGGAG
GTGGTGGAGCATTCTGACTCTTTAATATGAAAGGTTGTTTACTTGGAGAG
CTTGAATTTTCTTCAGTGGCGATCCCATTAGGACTGCTTTTGGGTGGAGG
ACGACTGGAAGGAGGGCGGTTTGACGGTGGGCGGTCGTTATTATTTTTGG
TATTATTTACGCCCATGAAAGATGAGCCAGATGGATTTTTAAAGCTGTTT
GGTTTTGAATAACCATTGCTTGATCCATACGATCCATTCGATGTTGAATT
ATGGCTCTTTTGGCTACTCGTGTAGTTGGCATTCTGGCTGTAAGTTTGGC
CGTTATTTGCAAACGATACACCGTTCGATTTGACAGGCGATTTGACTGGA
GAACTTCCGTTTGATTTGATAGGTGACGTTGGTTTTGAGGAAAGAAGACT
GTTGTTGCCACCGTTGAAGAATTGTTGTCTATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003789XLOC_003789Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006780-exon-sc0000070-1575043694:248437..249015TCONS_00006780-exon-sc0000070-1575043694:248437..249015Clytia hemisphaericaexon
TCONS_00006780-exon-sc0000070-1575043694:245882..247126TCONS_00006780-exon-sc0000070-1575043694:245882..247126Clytia hemisphaericaexon
TCONS_00006780-exon-sc0000070-1510915933:248437..249015TCONS_00006780-exon-sc0000070-1510915933:248437..249015Clytia hemisphaericaexon
TCONS_00006780-exon-sc0000070-1510915933:245882..247126TCONS_00006780-exon-sc0000070-1510915933:245882..247126Clytia hemisphaericaexon
TCONS_00006780-exon-sc0000070-1491911889:248437..249015TCONS_00006780-exon-sc0000070-1491911889:248437..249015Clytia hemisphaericaexon
TCONS_00006780-exon-sc0000070-1491911889:245882..247126TCONS_00006780-exon-sc0000070-1491911889:245882..247126Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:245882..249015 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0299152	0.085712	0.0310174	0	1.1077	1.02043	3.50622	4.19571	1.77832	1.65823	1.05747	1.30739	1.37555	1.83853	0.369627	0.835351	1.05512	1.03164	1.0569	4.33729	1.4627	1.24373	0.0907175	0.227684	2.12017	2.13276	0.463084	0	0	0.137257
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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