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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006764 ID=TCONS_00006764|Name=TCONS_00006764|organism=Clytia hemisphaerica|type=transcript|length=942bp
CCAAAATGTTGTATTTTACGTAGAAGCCAAAAGGGAGTGGAATAATTAAG
TATCAAGATGTTAGCGAGTTTGAGGATTTCATCTCTGCGTCGAACAGCGA
AATTTATTGgTATACGTTTACTTTCGTCTACGTATCAACGTCATATATTA
ACGGACGAGCAAGTGGAAGCGTATCAACGTAACAGTTACGTCATTTTACG
CAATCTTCTTACGCAAGATGAAAAGAAGGATTTTCAACGAATCATAACGG
AGCTGGAAAAATGGCCAGTTAGTGACGACAAATGGTTTACGTCTGTCAAG
ATTAGAAGGTTTTTATGAATATCACAATGATTTAAAAGAGTATGTCAAAG
GAAAATTAGGTCAAGCTGCTTCAGATTTAATAGGAGAGGAAGCTGTAGTA
TTCAAAGATAAAATCAACTTCAAATATCCTGGAGGCATTGGCTACGACGC
GCACCAAGATGGGTCCTCGTGGACCATGTTTGGACAGTACTTCCATATGT
CGGCACTTGTCCCAGCAAATCCAATGACCTTAGAGAATGGCTGTTTGAAA
TTGGTTGCCGGAAACTGGGGCGAATTACCATGGTTACCGTTAGACGAGAA
TGGTGATATCAAAGAAGAGAtagcgaaaaattttaaattggaTCCAGTGA
TTTGTGATGCTGGAACTGTAATCATGTTTAATTCTCATGTCCCTCATAAA
TCAGATGTCAATCAAACGGACCAATCAAGACGCGCCCTTTACATCACGTG
GAATGGAGAATCGTTGGGTGATACCCGCAAAAAATATTATGATTTAAGAC
GAGAATGTCATCCACCAGATCATTTGAGAGATCCAAATAAAGATTATACG
GAAGGTATTCAACTTTTTGATGAACAGATTTTGGAAATGGGAAATAACAG
ATGGCCAAAAGCTGAACGAGGAAAGTATTAGAAAACTTGTGC Run BLAST on NCBI protein sequence of TCONS_00006764-protein >TCONS_00006764-protein ID=TCONS_00006764-protein|Name=TCONS_00006764-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MFGQYFHMSALVPANPMTLENGCLKLVAGNWGELPWLPLDENGDIKEEIA
KNFKLDPVICDAGTVIMFNSHVPHKSDVNQTDQSRRALYITWNGESLGDT
RKKYYDLRRECHPPDHLRDPNKDYTEGIQLFDEQILEMGNNRWPKAERGK
Y Run BLAST on NCBI transcript from alignment at sc0000070:556516..564919+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006764 ID=TCONS_00006764|Name=TCONS_00006764|organism=Clytia hemisphaerica|type=transcript|length=8404bp|location=Sequence derived from alignment at sc0000070:556516..564919+ (Clytia hemisphaerica)
CCAAAATGTTGTATTTTACGTAGAAGCCAAAAGGGAGTGGAATAATTAAG
TATCAAGATGTTAGCGAGTTTGAGGATTTCATCTCTGCGTCGAACAGCGA
AATTTATTGGTAAAAATGGTTCTTTTGATTTCATTGttgaaaaatttact
catttgcACTCGATACAACTTATTCGTTAAACTCTCTAGGCTACGTTAAC
TTTTATGGACAACTTTAAATGAGAAATCAGAAATCATAGTTTTAATTAAA
TACGGAAAAAGCCAAATGGGTCTCATTGGGGGAACTTTGAATTTACTAGA
ATTACAGTAATGTACGTAAACGTCATAATATAGAGtacgttttatttttt
aggTATACGTTTACTTTCGTCTACGTATCAACGTCATATATTAACGGACG
AGCAAGTGGAAGCGTATCAACGTGACAGTTACGTCATTTTACGTGATCTT
CTAACGCCGGAAGAGAAGAAAGATTTTCAACGTATCGCcactgaaattga
aaattggcCAATCAGCGATGACTGGTTTTCCTATTTTGAAGAAGTAGGCG
GTGTGAGGCGTTTGTCAAGATTAGAAGGCTTCTACAACCACCACGCTGAC
TTAAAAAAACATGTCAAGGGCAAGTTAGGTCAAGCTGCTTCCGATTTAAT
AGGCGAGGAAGCAatacttttcaaagaaaaactaaacATGAAATACCCTG
GTGGTTTTGGTTATGACCCACACCAAGATGGAGTTGGCTCTTGGAattat
tttggtcaatttttccacATGTCAGCTGTGGTCACTTGTGATCCAATGAC
TATTGAGAATGGTTGTCTACAAGTGGTTCCTGGAGACTGGGGGGAATTAC
CATGGTTACCAATGGATATCAATGGTGATATTACAGAGGAAGTTGCGAAA
GGGTTGGATTGGAAACACATGATTTGTGATGCTGGAACTGTCATCATGTT
TAATTCTCATGTCCCTCATAAATCAGATGTCAATCAAACGGACCAATCAC
GACGCGCCTTTTTTATCACGTGGAATGGTGAATCGTTGGGTGATACTCGG
CAAAAATATTATGATTTGAGACGTGAATGTCATCCACCAGATCATTTGAG
AGATCCAAATAAAGATTATACAGAATTGATTAGAATCTTTAATGAACATA
ATTTAGAACAATCGAATGACAGATGGCAACCAGATttagaagaagaaaca
aaatgattaaattttaCTTTGGAAGTGTGTAACTTTAAATGTAAAGAAGC
CatgaaaaatcaataaaatttgtttaaaaacgCTAAAATGATGTGTCTAA
CTGATGACTGTCTAACGCGTGCCATTTGGGAGGACTAGAGTTCAATATTT
TCTAACTAAGACAAAAACAATCGTAGCGATATAGCGAGAAACTCTAAGCA
GaccgaaaaaaattccaaagtcttcagacatacatacataccgACAATAT
TTAGATTCTCAAAGACTCAGATTCTAGCTAAACCTGAAGCTGAGACTAAA
GTCGAGGTATAAAATCTTAAATCCCAACTAATTATACCGTTGAGAataca
gtagcgtagacaagacgggcgcaaaatttgtgtaggagagcagattttta
tgacacttaATTATCTAGTCATAATATAAAAAGGTAATTattgtgtcata
aaaatctgctctccccaaagacttataaccaaaacaagacgtctaagcgc
ataattatgcaaaattatctcattgttcgaacaataaaaataaatttcct
ttgatCCGCACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATAAGGTCCATAAAAGG
CTCTaactactcttgggtacctaaataaatgggggtttggaataagccag
ataggagaatttatttattagcgGGGGAGGGGAAGTTTATTACGTATCCA
AAAGTACAGTTTTATATCGTAGATATAGTTTTAGTAAAAtagagtttaaa
aaatgtttgtatgtCATTCAAGTCCATCGTAAAATATCACGATACCCTCT
AGTTGAGTGTCTACTTCCATGATTATTATTTCTTCATTTCAATATCGATA
TTAACACATATAAGGTATATTAAAATAGTCAATCAACATCTTGTATATAT
GTACTATGTcattcaaaataccaaaaatattctcaagTTTCCAATCAATT
TAATTGAATGTCAAGAGTATGAATTATAAGATTGGGTTAATCATTCCACC
ATTTATGGAATCAGCCTTTTTAGAGTTTCATATATCTGCAAGTTTTGCAA
ACACCAAAGTTAAGTAGAAAAGTGATCAGCCATAATGATAAACATTCACA
ACATATTAGTTCTTTAACTCGCTTTAACTCATCTGTCTTTTGGTACTGTA
GGCCAGGTCGTcctcaaaagtttaaaagtgtCCTAAAGTCTTTGAAGCTC
ATCATTTGATCATCTTTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGAAACATTTTCACATTCATTTAGATTAGAACGAAGTCAG
agtttctaattttctaatcaaagtttttctgcttcagccattttgaaaat
ttcgacgaaaattctgagaaattagtaatattgattattttttgctgact
cggcaaaacaattgtttttattgctgACGCGGCAAAATTGATTGTTTTCG
TTCACTAATTATGCGGAAACCCTGTAGATATAGTTTATNNNTCCCACACA
AATTCTGCGCGCTCTCCCACACAAATTCTGCGCCCCCcccccttgtctac
gctactggaaTATATCACCACTGAATTGATTAGAATCTTTAACGAAGATA
ATTTAAAACAATCAAATAGTGGCGACCACATTTAGAAGAAATAAAATGAT
TTGATTCTACTATGGAGATGTGTataatgaagtataagcccgaagggcta
gaagtcaatctccttggtaggacttgaagccaacaaatcctacgcggcct
tgagcggctcgcctggtttttacacaaatgacagattgaaactaaaattt
accgctaaatttcgaaaaaaatatcaattgtgaacaaaggaattgctaga
ttcaatctgtcgtcaaaaatgcggcgcattttttaaggcttcaccttttc
ttgcctgagaaaggttagagattgaactctagcccttctgactttaaact
caatggatgTGTACCTTTAAATCTAAATATGTCataagaaaacaataaaa
tttgttTACAATCACGAAATGAATTTACGAACTGCTCTGAAAATCAACTG
TAGCGGCAATGAGAAACTCTCACCagaccaaaaaatcaaaattctgaaaa
aagcACAATAAAATATTCATCCAAAGAATGagagtgtcaatttttttcca
aattcgaaCAATTTTAGGTTTCCAGGCTGCCACAAAGTTTTAACCTcctt
ttggcgaaaaacttttCCAAATCGGACTggaaatgctgaaaatgagCATT
TTGAGTAAAATACTGACCGGTATTTACCGATCACGCACGTGaccaaattg
aaattttacacacAGTACACCCCCTTcccacagacccggtagggtAGCCG
ATGATGCGCCCCGCGTTGAGAATAGATATTTGGATGTTCAGTTGTAGTAG
TAGTGAAAAGCTCTTCCAAGGATGCaaataattaaatcaaaacgAAACAA
ATGCACCAATatattcgccaaaataaaaaacgtGTCAAGATTGAGttaaa
tctgaccatttttaaTGTCTCCAGGCTACCCTGAATTTtgacaatgaagt
ataagcccgaagggctagaagcgaatctctaacctttctcacgcaagaaa
aagtgaagccttaaaacaTGCCCGTATTTTTGAGGACGGCttgaatctag
cgattcctTTGCTTTCAagtgatattttttcgaaatttagcagtaaattt
tagtttcaatctggcatttgtgtaaaaaccaggcgagctgCACTATGCCG
CGCAACTTTGTTAGgatcaaatcctaccaaggaaattcgcctctagccct
ttgggcttatacttcaCTGAGTTTTAACCTTATTTTGGCGAAAATTTGTC
ATTAGGTCCATAgcatatgaaaaaaatatttctttggaaAGTGAAAACAA
TACCCCCAGAAATTCAGCCAGAGAACAAAGTGTGACGTTTATAATTTACT
CAGCTGAGAGTCGATACCATTTATTTTCACATCTTTGAAGAGTTTGCAAT
GAAAATCGAGTCAAACGAGTTAAACATGTCAAACGAGTTAGACATGGCTG
ACAAGAAACTTGTAAAAATACTAGTCAAAAGTTtatagattttcattgga
taacTATCAATAAAAATAACATCAACAATGATACTCGCTCTCAAATCTTT
GACCTGAATAAAAAATCTTACTTATTAAGGTGTTTGTTAGATAAGGTCAA
AATTAAAGATAGATATAGAAGAAAAGAAGATGTTGGCAAGTTTGAAAGTT
TTCAACTCTGAAACGAACAACCAGAATTGGTAAAAAATGTTTGCTTTCTC
TTTTAAATTCCATATATATAGCTATTCGTTTACTCTTTTTACTTTCTAAA
AGTATGATCATAACGCaggggttttgctttgtttttggtaggctGGCAAA
TCTAAAATTAACTCTGGTGATTTCTAGATTCAAGGCCGGTGAATTCTTAG
CAAGcgcagtgtattgattagcgtaaaTATGTATTTGAGACGGCGAACCG
AACTTTTCGAACGGCGAATCGTAATTTTTTTCGTGCCTAGGACCAGCGAA
ATTCGCGGTTCGCTAGGCCTAAATAAGACTTAAGTATTCCTAATCGAGAA
AACGTATAATTTCACGATTCTAAAAATTTACGTAAAATCCAAAACGGAAA
CTAAAAAGGGGGATCCCCGAAGATTAGATGGGAAAGACATGCTGAAGGCG
GGAAACTAAACCTTGCTATGACTCATTTTTAAGGGATGTTGGTATTTCTG
ATTAATATCTCAAATTTTCAGGTGTTCGTTTACTTTCATCTACGTATCAA
CGTCATATATCAACGGACGAACAGGTGGAAGCGTATCAACGTAACAGTTA
CGTCATTTTACGCAATCTTCTTACGCAAGATGAAAAGAAGGATTTTCAAC
GAATCATAACGGAGCTGGAAAAATGGCCAGTTAGTGACGACAAATGGTTT
ACGTCTGTCAAGATTAGAAGGTTTTTATGAATATCACAATGATTTAAAAG
AGTATGTCAAAGGAAAATTAGGTCAAGCTGCTTCAGATTTAATAGGAGAG
GAAGCTGTAGTATTCAAAGATAAAATCAACTTCAAATATCCTGGAGGCAT
TGGCTACGACGCGCACCAAGATGGGTCCTCGTGGACCATGTTTGGACAGT
ACTTCCATATGTCGGCACTTGTCCCAGCAAATCCAATGACCTTAGAGAAT
GGCTGTTTGAAATTGGTTGCCGGAAACTGGGGCGAATTACCATGGTTACC
GTTAGACGAGAATGGTGATATCAAAGAAGAGAtagcgaaaaattttaaat
tggaTCCAGTGATTTGTGATGCTGGAACTGTAATCATGTTTAATTCTCAT
GTCCCTCATAAATCAGATGTCAATCAAACGGACCAATCAAGACGCGCCCT
TTACATCACGTGGAATGGAGAATCGTTGGGTGATACCCGCAAAAAATATT
ATGATTTAAGACGAGAATGTCATCCACCAGATCATTTGAGAGATCCAAAT
AAAGATTATACGGAAGGTATTCAACTTTTTGATGAACAGATTTTGGAAAT
GGGAAATAACAGATGGCCAAAAGCTGAACGAGGAAAGTATTAGAAAACTT
GTGC Coding sequence (CDS) from alignment at sc0000070:556516..564919+ >TCONS_00006764 ID=TCONS_00006764|Name=TCONS_00006764|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at sc0000070:556516..564919+ (Clytia hemisphaerica)
ATGTTTGGACAGTACTTCCATATGTCGGCACTTGTCCCAGCAAATCCAAT
GACCTTAGAGAATGGCTGTTTGAAATTGGTTGCCGGAAACTGGGGCGAAT
TACCATGGTTACCGTTAGACGAGAATGGTGATATCAAAGAAGAGAtagcg
aaaaattttaaattggaTCCAGTGATTTGTGATGCTGGAACTGTAATCAT
GTTTAATTCTCATGTCCCTCATAAATCAGATGTCAATCAAACGGACCAAT
CAAGACGCGCCCTTTACATCACGTGGAATGGAGAATCGTTGGGTGATACC
CGCAAAAAATATTATGATTTAAGACGAGAATGTCATCCACCAGATCATTT
GAGAGATCCAAATAAAGATTATACGGAAGGTATTCAACTTTTTGATGAAC
AGATTTTGGAAATGGGAAATAACAGATGGCCAAAAGCTGAACGAGGAAAG
TATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006764-exon-sc0000070-1491911889:556516..556624 | TCONS_00006764-exon-sc0000070-1491911889:556516..556624 | Clytia hemisphaerica | exon |
| TCONS_00006764-exon-sc0000070-1510915933:556516..556624 | TCONS_00006764-exon-sc0000070-1510915933:556516..556624 | Clytia hemisphaerica | exon |
| TCONS_00006764-exon-sc0000070-1575043694:556516..556624 | TCONS_00006764-exon-sc0000070-1575043694:556516..556624 | Clytia hemisphaerica | exon |
| TCONS_00006764-exon-sc0000070-1491911889:556868..556920 | TCONS_00006764-exon-sc0000070-1491911889:556868..556920 | Clytia hemisphaerica | exon |
| TCONS_00006764-exon-sc0000070-1510915933:556868..556920 | TCONS_00006764-exon-sc0000070-1510915933:556868..556920 | Clytia hemisphaerica | exon |
| TCONS_00006764-exon-sc0000070-1575043694:556868..556920 | TCONS_00006764-exon-sc0000070-1575043694:556868..556920 | Clytia hemisphaerica | exon |
| TCONS_00006764-exon-sc0000070-1491911889:564140..564919 | TCONS_00006764-exon-sc0000070-1491911889:564140..564919 | Clytia hemisphaerica | exon |
| TCONS_00006764-exon-sc0000070-1510915933:564140..564919 | TCONS_00006764-exon-sc0000070-1510915933:564140..564919 | Clytia hemisphaerica | exon |
| TCONS_00006764-exon-sc0000070-1575043694:564140..564919 | TCONS_00006764-exon-sc0000070-1575043694:564140..564919 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000070 | supercontig | sc0000070:556516..564919 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008775 | Phytyl_CoA_dOase |
Blast
The following BLAST results are available for this feature:
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