TCONS_00006753 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006753
Unique NameTCONS_00006753
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006753 ID=TCONS_00006753|Name=TCONS_00006753|organism=Clytia hemisphaerica|type=transcript|length=2309bp
GAAGAAGCAGCCAGAACAGGAACAAAAGTTGGAAACTGCTACAGCACAAG
ATATCAAGAACAGTGTTCGTACAGTGACCATGGAGAACAGTTCAAAAGAT
TTAATCGAAACATTAAGAGGGAAACATGAGCAACTACAGTCTGAATTGAA
TCGTGAGCGCAAAAAgAATTGTGATCTTCATGAAGCTAATCGCATTGCTG
AAACCGAGGCATCACAAGCCAGGAAGATTATTGAAGAAAAACAAGATGAG
ATAGTGAGCTTGcgtaaagaaaatgaagattgtaGGAAtagGATCAGTTC
TATGATGATGTCTCAAGAGGTTGGCACAACATCTTCACAAAATTTGTTGG
ACATTAACCGCCCAAGTATCGTCAAAGATAAATTCAGATTACTCTACGTC
AACGAGTACAATGATGTTTTGAGCGCATGGGATCAATTGTCTGAAAAAGA
ATGTTCTGATTATCTCCTGGAGATTTTGTTTGATGCAAACGATTTATGCA
ACCAATATGCTAATAAATTCACCGGAGATGTCACAAACTCGCTTGAGTGT
ATTTTCAAgaagATGCCATTTTCTGGTAATAATACCTACAAAGGGAACAA
ACACATTTTGGAATTTATTCACGAAAATTTGAAGAACATGCCTCATGAAA
GTATTCAAGAACAATTCTGCAAACTTGTGCTCCAGAGACATGAAAAACGA
AATCCAGAATTAGCTCAGGAGAAATATGATGAGATGATTTCAAAGTATAT
CATGGGATGTGTGTCGGTGACTTGGTTAATGAATTGCTGTCTACCGCCCA
TCTATATTACCAAAgatgtcggggaaaaattcaaCAAGAAACTTCATACA
AAGTTCAGTGGACGTGGTGATTATGTTCAGTTTTATTTATGGCCATGTTT
GTTTACATCTGAAGATGAGTTCAAATCTGGATTGCCAGCATTTGCCAAAG
GTGACGTATATGTTGGGAAGAGGCCACCTTCTTTAAAGGGGAAAAAAGTG
GAggaagtttcaaataaaaatgttccAGTTGAAGAAACACAATGTAAAAA
GATCAAGAGTAAAGATGTAGCAACTGGTCCTGGAATTGCCGTCCGTGAGA
ATTGTGTAGCAGAGCCAAAGATTGAccaaaagaaattgttttaCAGTCCA
ATGGAAGAAAAGAGAATCGTAGAAAGGCTACAATCAAGTGGAAATGATCC
ACCCAAGGATGATGAAGTTATCCAACTGGCTGAAAAACAGtcaaaacaat
cttccaaagaTGGTATAAAAGAAAGTAGCAAATCAAACCTAAATGATTCC
AGCAGTTCTGCCCTGAAAGGCACTGACAAGTTTGCTGAAAGAGgtgaaaa
atttcagtcagAGAAGAAACAAGAGCTACTGGTCCATTACAAATCTGATG
AAATTTCTATTGACCCACAAGATCAGTCTCGCAGTCAACATTCTGAGCGA
CAAAATGACCATGACGAAGACGTCAGTGATTCTGGAAGATCTGACACACC
AACTCCAATGGAGATAGATGAAAAGCCTCCTAGAGAATCTAAACTGCCAG
AATTGTATGAAAACATTAGTGGTATTGGAACAAGAAAACCCTCAAAATCA
GATTATGGTAAATCCGAAGTCAAAACAACAGGGACTGTTATTAAAACTAC
TAAAGTTACCACGATTACTTATAGTAATGCTGCTAAATTAACTCGACCGC
CTATCCGAAGCTCCACTTCGCGGCGCTAGTTAAAACTAATGATGTTTTAA
GACTATAAAATAATTGATGATTTTAAATAcatcttttctattttgtattt
tttgttaagggataatttgaaataaattttgttgactttttgttgagttt
tttcatgaaattacaTCTTATGTTTTAATACTTTTGGcgcacttttttat
tttttcacataTATAGCTATCAGAGTTTATTATGGTAATTTATTTTGCTA
GTTTTTGTAAATTGGCTGAAAAAAGTCATTGTAATTTTCCAATCTCGAAG
AAATCTTTCCCCAGGACCAGTGGTTGGTTCAGAAAGTGGAGCCTAAGCAA
ACGCAACTATTTTTATAGATCCACAAACCCAAGTCGCCCTATTCCATTCT
GATTTTGCGCCAAGAGTcttaatcagatggtttgagatatttggacTGTA
GATTATTTCTATTTTCGTGAACAAAACCCCAGAATATTTTTTgccaaact
tttttccaaaatcaagttaaaagttttttttggcttttagtgAGAAAACC
ATAGAATTACAAAATGGAAGAATTCATAGAGTTTCCAAATTGTTGTAact
caacttttg
Run BLAST on NCBI

transcript from alignment at sc0000070:338405..342755+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006753 ID=TCONS_00006753|Name=TCONS_00006753|organism=Clytia hemisphaerica|type=transcript|length=4351bp|location=Sequence derived from alignment at sc0000070:338405..342755+ (Clytia hemisphaerica)
GAAGAAGCAGCCAGAACAGGAACAAAAGTTGGAAACTGCTACAGCACAAG
ATATCAAGAACAGTGTTCGTACAGTGACCATGGAGAACAGTTCAAAAGAT
TTAATCGAAACATTAAGAGGGAAACATGAGCAACTACAGTCTGAATTGAA
TCGTGAGCGCAAAAAGTTAGTAGATAACATCTATAAAAAATCCCAAATAA
ATCAATAATTTGCTGTGTGTATATCTTTTTTGGAAGTGATCTCTGATTTA
GGTTAGGGCTTATTCCCACTAGGAAAGGAGTGTTTCTTGTCTTGTCTTAT
ATCTTTTAAGAGAACTGTTTTTTGAAAAGGTTCAAATCTTCCTGATTTTG
ACATATATATTTAAGTTACTGAATAAAACATAAAATGccaaagatttttt
gaagcaaaaatttaagaaataaaactattttttattgttttcaggAATTG
TGATCTTCATGAAGCTAATCGCATTGCTGAAACCGAGTAAGAGGGGTGAC
CTCAACCTCCATAAAAAAAGAGAATGTTTATActtaaaacctaaaaaata
tGTATTACATGTCTTTTTGATCAAAAATCGTGAtgctaatttttatttat
tgaatatttttgtttaacactcaaaacaaaaattccattttcaaataaga
aaaagaattttgagTTTGTACATGACAGAAGTTTAAATCACACGAGATTC
AAATTAGAATTATCCTGAACAAGTTTGGTACCAATAATCATCGATCTCAA
CAACTTTTTATAGGGCATCACAAGCCAGGAAGATTATTGAAGAAAAACAA
GATGAGATAGTGAGCTTGcgtaaagaaaatgaagattgtaGGAAtaggta
aaaataaaaacttcttcattttcatgcATTGACTGATTACTCTATTAGAC
GATTTCTTCAGTTGTCGTCTAGaacttacattttatttttaaccattttt
tagGATCAGTTCTATGATGATGTCTCAAGAGGTTGGCACAACATCTTCAC
AAAATTTGTTGGACATTAACCGCCCAAGTATCGTCAAAGATAAATTCAGA
TTACTCTACGTCAACGAGTACAATGATGTTTTGAGCGCATGGGATCAATT
GTCTGAAAAAGAATGTTCTGATTATCTCCTGGAGATTTTGTTTGTAAGGA
TCGGGTTCTAATTTTTTGTAGCTTTGAAAAGTGAATACTACTAAGTACAA
ATAATAATACCATTTTATGTGGCatatatttttgagtttttaggtATTCA
ATGACAATTGTTGAATTAGATTTGTTTAATGTTTCATTTTAGGATGCAAA
CGATTTATGCAACCAATATGCTAATAAATTCACCGGAGATGTCACAAACT
CGCTTGAGTGTATTTTCAAgaaggttgaaatttctttgtatttataAGTT
TGATTATTTGACCCATCTTTGTTCGGTGAAAGTGATATTATGTGCAACTA
AATTgcttattattttatttaccTGACAAAACCTTTTCAAGATTTACTAC
AATTGTTGCTGCCGATGTAGGAATACATCTATGATAGACCGACTGCTGTT
GAAGGCTGTCCAGGCTGTCGTATCTTGTATACATCCTTTAGCTCATTGGC
AAACACAGCTATTTTAACATCTTAACAAGtggactttttttaaaagaaca
aactagATTGCGCCTTCCAAAAAACAGCAGacagaacaacagcaacaaaa
tttaatttggcaattCAATTTGCTTTTAGATGCCATTTTCTGCTAATAAT
ACCTACAAAGGGAACAAACACATTTTGGAATTTATTCACGAAAATTTGAA
GAACATGCCTCATGAAAGTATTCAAGAAGAATTCTGCAACGTAAGTGAAT
ACTTAAACAAGATCTTCTCCTAGGCTGGGAGAATTTGAAGGTTTTGAAGA
GCTTTTAATACTGATTTTATACATTTTNAATTCAATTTGCTTTTAGATGC
CATTTTCTGGTAATAATACCTACAAAGGGAACAAACACATTTTGGAATTT
ATTCACGAAAATTTGAAGAACATGCCTCATGAAAGTATTCAAGAACAATT
CTGCAAAGTAAGTGAATACTTAAACAAGATCTTCTCCTAGGCTGGGAGAA
TTTGAAGGTTTTGAAGAGCTTTTAATACtgattttatacatttttatttG
CTGTTGAGAGAGTTGATATTCAATCATGCTATAGATCCCACGTTGAAATG
GTTATAGAAATGTTCCATAAATAATTttctaatctatatattaatagcgg
taatctgtatgtctgttttccgtgtgtcactttcgttttcgcaagcaatg
tttttgttctcgataagtttgttttgattgatggatcggatagagcctgg
tttagactttattcagcctttgtttagAAATTCAAGGCCCTTCTacattt
attaattttaatttctgccttgGCTTGCCCatccctttgtttttctcttg
cctttgttttaatgttttcgaatgtaattaacgatcgtatttattaataa
cattcgaattctttttaaaactaAACAAATTCCTTTTACAGAaatgaaca
tttcaaatgtaaatcaaaacataaaaatcaaaaaatttgtcaacaacaac
agcattcaaagggctaCATCTTAACCGGCATGCGaagccgggtaccggct
agttttcTTTAATCTGACTATTCAGGGGTTTAATGCGGTCCcccatttta
taatttttgttataGCTTGTGCTCCAGAGACATGAAAAACGAAATCCAGA
ATTAGCTCAGGAGAAATATGATGAGATGATTTCAAAGTATATCATGGGAT
GTGTGTCGGTGACTTGGTTAATGAATTGCTGTCTACCGCCCATCTATATT
ACCAAAgatgtcggggaaaaattcaaCAAGAAACTTCATACAAAGTTCAG
TGGACGTGGTGATTATGTTCAGTTTTATTTATGGCCATGTTTGTTTACAT
CTGAAGATGAGTTCAAATCTGGATTGCCAGCATTTGCCAAAGGTGACGTA
TATGTTGGGAAGAGGCCACCTTCTTTAAAGGGGAAAAAAGTGGAggaagt
ttcaaataaaaatgttccAGTTGAAGAAACACAATGTAAAAAGATCAAGA
GTAAAGATGTAGCAACTGGTCCTGGAATTGCCGTCCGTGAGAATTGTGTA
GCAGAGCCAAAGATTGAccaaaagaaattgttttaCAGTCCAATGGAAGA
AAAGAGAATCGTAGAAAGGCTACAATCAAGTGGAAATGATCCACCCAAGG
ATGATGAAGTTATCCAACTGGCTGAAAAACAGtcaaaacaatcttccaaa
gaTGGTATAAAAGAAAGTAGCAAATCAAACCTAAATGATTCCAGCAGTTC
TGCCCTGAAAGGCACTGACAAGTTTGCTGAAAGAGgtgaaaaatttcagt
cagAGAAGAAACAAGAGCTACTGGTCCATTACAAATCTGATGAAATTTCT
ATTGACCCACAAGATCAGTCTCGCAGTCAACATTCTGAGCGACAAAATGA
CCATGACGAAGACGTCAGTGATTCTGGAAGATCTGACACACCAACTCCAA
TGGAGATAGATGAAAAGCCTCCTAGAGAATCTAAACTGCCAGAATTGTAT
GAAAACATTAGTGGTATTGGAACAAGAAAACCCTCAAAATCAGATTATGG
TAAATCCGAAGTCAAAACAACAGGGACTGTTATTAAAACTACTAAAGTTA
CCACGATTACTTATAGTAATGCTGCTAAATTAACTCGACCGCCTATCCGA
AGCTCCACTTCGCGGCGCTAGTTAAAACTAATGATGTTTTAAGACTATAA
AATAATTGATGATTTTAAATAcatcttttctattttgtattttttgttaa
gggataatttgaaataaattttgttgactttttgttgagttttttcatga
aattacaTCTTATGTTTTAATACTTTTGGcgcacttttttattttttcac
ataTATAGCTATCAGAGTTTATTATGGTAATTTATTTTGCTAGTTTTTGT
AAATTGGCTGAAAAAAGTCATTGTAATTTTCCAATCTCGAAGAAATCTTT
CCCCAGGACCAGTGGTTGGTTCAGAAAGTGGAGCCTAAGCAAACGCAACT
ATTTTTATAGATCCACAAACCCAAGTCGCCCTATTCCATTCTGATTTTGC
GCCAAGAGTcttaatcagatggtttgagatatttggacTGTAGATTATTT
CTATTTTCGTGAACAAAACCCCAGAATATTTTTTgccaaacttttttcca
aaatcaagttaaaagttttttttggcttttagtgAGAAAACCATAGAATT
ACAAAATGGAAGAATTCATAGAGTTTCCAAATTGTTGTAactcaactttt
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003776XLOC_003776Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006753-exon-sc0000070-1491911889:338405..338569TCONS_00006753-exon-sc0000070-1491911889:338405..338569Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1510915933:338405..338569TCONS_00006753-exon-sc0000070-1510915933:338405..338569Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1575043694:338405..338569TCONS_00006753-exon-sc0000070-1575043694:338405..338569Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1491911889:338849..338890TCONS_00006753-exon-sc0000070-1491911889:338849..338890Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1510915933:338849..338890TCONS_00006753-exon-sc0000070-1510915933:338849..338890Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1575043694:338849..338890TCONS_00006753-exon-sc0000070-1575043694:338849..338890Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1491911889:339168..339251TCONS_00006753-exon-sc0000070-1491911889:339168..339251Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1510915933:339168..339251TCONS_00006753-exon-sc0000070-1510915933:339168..339251Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1575043694:339168..339251TCONS_00006753-exon-sc0000070-1575043694:339168..339251Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1491911889:339358..339547TCONS_00006753-exon-sc0000070-1491911889:339358..339547Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1510915933:339358..339547TCONS_00006753-exon-sc0000070-1510915933:339358..339547Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1575043694:339358..339547TCONS_00006753-exon-sc0000070-1575043694:339358..339547Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1491911889:339697..339777TCONS_00006753-exon-sc0000070-1491911889:339697..339777Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1510915933:339697..339777TCONS_00006753-exon-sc0000070-1510915933:339697..339777Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1575043694:339697..339777TCONS_00006753-exon-sc0000070-1575043694:339697..339777Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1491911889:340351..340461TCONS_00006753-exon-sc0000070-1491911889:340351..340461Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1510915933:340351..340461TCONS_00006753-exon-sc0000070-1510915933:340351..340461Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1575043694:340351..340461TCONS_00006753-exon-sc0000070-1575043694:340351..340461Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1491911889:341120..342755TCONS_00006753-exon-sc0000070-1491911889:341120..342755Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1510915933:341120..342755TCONS_00006753-exon-sc0000070-1510915933:341120..342755Clytia hemisphaericaexon
TCONS_00006753-exon-sc0000070-1575043694:341120..342755TCONS_00006753-exon-sc0000070-1575043694:341120..342755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:338405..342755 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.327806	0.23364	0.00971576	0.0705528	0.0154227	0.0380982	0	6.8472e-09	3.0071e-08	0.086179	0	0	0	0	0	0	0	0	0	0	0.482085	1.76515	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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