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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006720 ID=TCONS_00006720|Name=TCONS_00006720|organism=Clytia hemisphaerica|type=transcript|length=1244bp
AAAAAGTTGAGATGAACagatttccaaattttacagaaCATTTTCACGGC
TATTAGAGAAGAGAAAATAATTTGTGAAAAGAGCACTTTGCATTCTGAAA
CGAGATCGCAGTGATTAAACATGGCAACAACACTAACAAGTTCATCTTTC
TTTGGTGGACTTGATAAGACCAGAAACGATATCGATAAAGTTGTCGAATA
TTATGATCACCACGCCAATAATTACAATGCATGTCTTCACAACAGCAGAT
ATACAGAGACCACAGATTATTGTGCTGACTTGTTGAAAAGAGCACTAGGG
GTAAATTTTCAAGAGTGTGAAATTCTTGATCTTGGTTGTGGATCAGGGAA
GACAGGAGCCTCATTACTGAAGTTGGGTTTCCAGAAAATAGATGGTATTG
ATCCTTCTACGGAAATGCTTGAAGTAGCAAAAGAAATGGGCTGCTACCGT
AACTTGGTTGCTGGAAAGCTGACAGCAGAAGAAAGACTACCCTATGCAGA
CAACAGCTTTGATGGGATCCTTTGTGCAGGGTGTTTCACTGTTGGCCACA
TAGAGGTCAAAGATGGTATACCGGAGCTTTTAAGAGTCTTACGCACAGGT
GGTGTAGCTGTTTATACCATTTCGTTTACATTGGAGAAGGGAAAAGTGAT
GCAAGAGCATGCACCGTACGTCACTGGTAACGAGATGGAAATTCAAAGCA
TCGAGAAACATTTTTATCACATGATCGGAGAAAACCCTGTTTATTGTCAA
ATCTACtgtataaaaaaattgtaatttttcacAAGACTTTTGTTGAATGA
ACACTGATTTCTCTTTCAAAACTTAATACTTCTTATAAAACAGTgcatac
agtatgtggcccccaaaacggcgatcaaatttgaaatttttctcaaatct
agagaaaaagagattttacaaaaatttttgctgcatgaaaacctttaaca
tctctactttatttcctggtagttctttttcaaaattttcaatttcaaca
atatttttcaatcgcttaaagataggtagcttttttctaatgccccccaa
aacggaggtttgaaattttagcgatttctcgagatatttttaagatatga
ataaaaaattttgaccgtagttttgaagtatgatttagagtgttttgggc
ataaatttatttgataaaatttttacagtatacccctggttgtcaaaatg
caggtttggggcccccaaaacggaggtgtagttaaaatcaaatt Run BLAST on NCBI protein sequence of TCONS_00006720-protein >TCONS_00006720-protein ID=TCONS_00006720-protein|Name=TCONS_00006720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MATTLTSSSFFGGLDKTRNDIDKVVEYYDHHANNYNACLHNSRYTETTDY
CADLLKRALGVNFQECEILDLGCGSGKTGASLLKLGFQKIDGIDPSTEML
EVAKEMGCYRNLVAGKLTAEERLPYADNSFDGILCAGCFTVGHIEVKDGI
PELLRVLRTGGVAVYTISFTLEKGKVMQEHAPYVTGNEMEIQSIEKHFYH
MIGENPVYCQIYCIKKL Run BLAST on NCBI transcript from alignment at sc0000070:62249..64541+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006720 ID=TCONS_00006720|Name=TCONS_00006720|organism=Clytia hemisphaerica|type=transcript|length=2293bp|location=Sequence derived from alignment at sc0000070:62249..64541+ (Clytia hemisphaerica)
AAAAAGTTGAGATGAACagatttccaaattttacagaaCATTTTCACGGC
TATTAGAGAAGAGAAAATAATTTGTGAAAAGAGCACTTTGCATTCTGAAA
CGAGATCGCAGTGATTAAACATGGCAACAACACTAACAAGTTCATCTTTC
TTTGGTGGACTTGATAAGACCAGAAACGATATCGATAAAGTTGTCGAATA
TTATGATCACCACGCCAATAATTACAATGCATGTCTTCACAACAGCAGAT
ATACAGAGACCACAGATTATTGTGCTGACTTGTTGAAAAGAGCACTAGGT
ATGGTTTGAGACTTTTTATATAATGATGTTTTCATCGAGACACATGAAAT
TGACGACGGTTCCTTGGAACCACTGTGACTTGGACTTGTATTAAAACCTT
GAATTAAGAGAAAAAGATTTAACTAAAAGTAACACcttgttaaaaagatt
tttttgagcAGATTGATGTATGCTTTGGAGAATTTTCTAAgtatttaatt
gaaaacaatgaGAAATGTGTTTACTAccatgaagtcgggtaactcGCATC
AGTGGAGGAAAACTTGCATAGCTGTGACATGAATGACcaggtcattaaaa
tacaatagttaaatcaaaacaaatctggTTTACAAAATTTGCGAGAGTTT
GCTGAATGTAAAATGTATATCTCCTAATCATAATGATGTCATGCATGATA
ATGTTTAATGTCCTGCTCCCATCAAGAAACATCTGAATTcccgccatctt
gaaatttataatctcaaatgatttttaattattcaaccaGGCTGTTTTTT
TACTAGCGATTCTTTCGGCAAGTAATTCGCCTAAAAAAACTCGGGCGGTA
AATATGAGATTCTGGTAGAGTAGAGTTGCGTGCGGAACTGTACAGTTCTT
TGCACTGTTAcatttatgttttgaaattttgctgctttgatgattatgca
agtttccctccactgatgcaagttatctGACTTCACGCTATACATATTCT
TTTGAAACTTTGAACTCCACTGATTTCAAAAtgtgataaaatatttttta
actcttttgGATCAAAAGCTTAACCCTCAAAAAAGATCCAAACTGACGAT
AAAGTGCAAAAAATGGAGCTATAACTTTTGACCCAAAAATGATATGGGAG
ATATAAATACTATTTGAGATCAGCGGggttcaaagttttaaaaaagcaTA
CAACAAAATTTTTCGTCAGATTAGGAAAAAGgtttctttcttcttcattt
cttaatttttaagaTGTTTATTTCAGGAACCATAAAAAGCTTACACGGAG
CCGCTCAAACTtatcttttcattcttttttgtcacttgtTATTTCAGGGG
TAAATTTTCAAGAGTGTGAAATTCTTGATCTTGGTTGTGGATCAGGGAAG
ACAGGAGCCTCATTACTGAAGTTGGGTTTCCAGAAAATAGATGGTATTGA
TCCTTCTACGGAAATGCTTGAAGTAGCAAAAGAAATGGGCTGCTACCGTA
ACTTGGTTGCTGGAAAGCTGACAGCAGAAGAAAGACTACCCTATGCAGAC
AACAGCTTTGATGGGATCCTTTGTGCAGGGTGTTTCACTGTTGGCCACAT
AGAGGTCAAAGATGGTATACCGGAGCTTTTAAGAGTCTTACGCACAGGTG
GTGTAGCTGTTTATACCATTTCGTTTACATTGGAGAAGGGAAAAGTGATG
CAAGAGCATGCACCGTACGTCACTGGTAACGAGATGGAAATTCAAAGCAT
CGAGAAACATTTTTATCACATGATCGGAGAAAACCCTGTTTATTGTCAAA
TCTACtgtataaaaaaattgtaatttttcacAAGACTTTTGTTGAATGAA
CACTGATTTCTCTTTCAAAACTTAATACTTCTTATAAAACAGTgcataca
gtatgtggcccccaaaacggcgatcaaatttgaaatttttctcaaatcta
gagaaaaagagattttacaaaaatttttgctgcatgaaaacctttaacat
ctctactttatttcctggtagttctttttcaaaattttcaatttcaacaa
tatttttcaatcgcttaaagataggtagcttttttctaatgccccccaaa
acggaggtttgaaattttagcgatttctcgagatatttttaagatatgaa
taaaaaattttgaccgtagttttgaagtatgatttagagtgttttgggca
taaatttatttgataaaatttttacagtatacccctggttgtcaaaatgc
aggtttggggcccccaaaacggaggtgtagttaaaatcaaatt Coding sequence (CDS) from alignment at sc0000070:62249..64541+ >TCONS_00006720 ID=TCONS_00006720|Name=TCONS_00006720|organism=Clytia hemisphaerica|type=CDS|length=1308bp|location=Sequence derived from alignment at sc0000070:62249..64541+ (Clytia hemisphaerica)
ATGGCAACAACACTAACAAGTTCATCTTTCTTTGGTGGACTTGATAAGAC
CAGAAACGATATCGATAAAGTTGTCGAATATTATGATCACCACGCCAATA
ATTACAATGCATGTCTTCACAACAGCAGATATACAGAGACCACAGATTAT
TGTGCTGACTTGTTGAAAAGAGCACTAGGGGTAAATTTTCAAGAGTGTGA
AATTCTTGATCTTGGTTGTGGATCAGGGAAGACAGGAGCCTCATTACTGA
AGTTGGGTTTCCAGAAAATAGATGGTATTGATCCTTCTACGGAAATGCTT
GAAGTAGCAAAAGAAATGGGCTGCTACCGTAACTTGGTTGCTGGAAAGCT
GACAGCAGAAGAAAGACTACCCTATGCAGACAACAGCTTTGATGGGATCC
TTTGTGCAGGGTGTTTCACTGTTGGCCACATAGAGGTCAAAGATGGTATA
CCGGAGCTTTTAAGAGTCTTACGCACAGGTGGTGTAGCTGTTTATACCAT
TTCGTTTACATTGGAGAAGGGAAAAGTGATGCAAGAGCATGCACCGTACG
TCACTGGTAACGAGATGGAAATTCAAAGCATCGAGAAACATTTTTATCAC
ATGATCGGAGAAAACCCTGTTTATTGTCAAATCTACtgtataaaaaaatt
gtaaATGGCAACAACACTAACAAGTTCATCTTTCTTTGGTGGACTTGATA
AGACCAGAAACGATATCGATAAAGTTGTCGAATATTATGATCACCACGCC
AATAATTACAATGCATGTCTTCACAACAGCAGATATACAGAGACCACAGA
TTATTGTGCTGACTTGTTGAAAAGAGCACTAGGGGTAAATTTTCAAGAGT
GTGAAATTCTTGATCTTGGTTGTGGATCAGGGAAGACAGGAGCCTCATTA
CTGAAGTTGGGTTTCCAGAAAATAGATGGTATTGATCCTTCTACGGAAAT
GCTTGAAGTAGCAAAAGAAATGGGCTGCTACCGTAACTTGGTTGCTGGAA
AGCTGACAGCAGAAGAAAGACTACCCTATGCAGACAACAGCTTTGATGGG
ATCCTTTGTGCAGGGTGTTTCACTGTTGGCCACATAGAGGTCAAAGATGG
TATACCGGAGCTTTTAAGAGTCTTACGCACAGGTGGTGTAGCTGTTTATA
CCATTTCGTTTACATTGGAGAAGGGAAAAGTGATGCAAGAGCATGCACCG
TACGTCACTGGTAACGAGATGGAAATTCAAAGCATCGAGAAACATTTTTA
TCACATGATCGGAGAAAACCCTGTTTATTGTCAAATCTACtgtataaaaa
aattgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006720-exon-sc0000070-1491911889:62249..62546 | TCONS_00006720-exon-sc0000070-1491911889:62249..62546 | Clytia hemisphaerica | exon |
| TCONS_00006720-exon-sc0000070-1510915933:62249..62546 | TCONS_00006720-exon-sc0000070-1510915933:62249..62546 | Clytia hemisphaerica | exon |
| TCONS_00006720-exon-sc0000070-1575043694:62249..62546 | TCONS_00006720-exon-sc0000070-1575043694:62249..62546 | Clytia hemisphaerica | exon |
| TCONS_00006720-exon-sc0000070-1491911889:63596..64541 | TCONS_00006720-exon-sc0000070-1491911889:63596..64541 | Clytia hemisphaerica | exon |
| TCONS_00006720-exon-sc0000070-1510915933:63596..64541 | TCONS_00006720-exon-sc0000070-1510915933:63596..64541 | Clytia hemisphaerica | exon |
| TCONS_00006720-exon-sc0000070-1575043694:63596..64541 | TCONS_00006720-exon-sc0000070-1575043694:63596..64541 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000070 | supercontig | sc0000070:62249..64541 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029063 | SAM-dependent_MTases |
Blast
The following BLAST results are available for this feature:
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