TCONS_00006718 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006718
Unique NameTCONS_00006718
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006718 ID=TCONS_00006718|Name=TCONS_00006718|organism=Clytia hemisphaerica|type=transcript|length=679bp
CTACTCTTTCAATATCGATTATGATGtatattaaaataatttgaggTGTT
GGAATTTATTGTTGTCCGTTTGTTTGTTGGCAGTTTCGAATGCCACTTAC
AAAACTTGGGTTTTGGGTCAATTCACAATTGTCGGTTGTTCCCCCTGTAA
TAGCAAAGCATTTCTGGTCAGTATGTTTCCATGTCCAATGAAAGCAATCT
GCTATTCCACTACATATAGCAGCACAATGTTGCCAAGAACGGACAGGGTA
ATGAAACTGGGAAGAAATGAAACAATCCCAATATCGGCCATAGTGTGGTG
TGCAACGATTGCGCTGAACGTAGTTGGTGCATCCTCTAGATCCTGAAACC
ACCCTCCAATTATTAGTTAAACCGCCAGATGATCCTTGCGATTTTAGATA
GCATGTAAGTTGGTTTTCCCCACCGGCTTCGTTATGAGCCCATGTCCAAA
AGTTGCAGCCAGACACAGTGTCGCACCAAATAGCACATTCTTGCCAGGTA
CCCAGAATCTTCCAATCAATGTTGTTATCCGGATGGTCTTGACCATACTG
AACCCCACATCCAATAGCcgtttgaacttgaaaaatcagGAACACAACAA
CAAGTATCATCTCTTTGACTTTCAACATCTTGAATCAAAGATGAGAGCAG
ATGAATGCAATTCTCAACTagaatgaaaa
Run BLAST on NCBI

protein sequence of TCONS_00006718-protein

>TCONS_00006718-protein ID=TCONS_00006718-protein|Name=TCONS_00006718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MLKVKEMILVVVFLIFQVQTAIGCGVQYGQDHPDNNIDWKILGTWQECAI
WCDTVSGCNFWTWAHNEAGGENQLTCYLKSQGSSGGLTNNWRVVSGSRGC
TNYVQRNRCTPHYGRYWDCFISSQFHYPVRSWQHCAAICSGIADCFHWTW
KHTDQKCFAITGGTTDNCELTQNPSFVSGIRNCQQTNGQQ
Run BLAST on NCBI

transcript from alignment at sc0000069:754219..754897

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006718 ID=TCONS_00006718|Name=TCONS_00006718|organism=Clytia hemisphaerica|type=transcript|length=679bp|location=Sequence derived from alignment at sc0000069:754219..754897 (Clytia hemisphaerica)
ttttcattctAGTTGAGAATTGCATTCATCTGCTCTCATCTTTGATTCAA
GATGTTGAAAGTCAAAGAGATGATACTTGTTGTTGTGTTCctgatttttc
aagttcaaacgGCTATTGGATGTGGGGTTCAGTATGGTCAAGACCATCCG
GATAACAACATTGATTGGAAGATTCTGGGTACCTGGCAAGAATGTGCTAT
TTGGTGCGACACTGTGTCTGGCTGCAACTTTTGGACATGGGCTCATAACG
AAGCCGGTGGGGAAAACCAACTTACATGCTATCTAAAATCGCAAGGATCA
TCTGGCGGTTTAACTAATAATTGGAGGGTGGTTTCAGGATCTAGAGGATG
CACCAACTACGTTCAGCGCAATCGTTGCACACCACACTATGGCCGATATT
GGGATTGTTTCATTTCTTCCCAGTTTCATTACCCTGTCCGTTCTTGGCAA
CATTGTGCTGCTATATGTAGTGGAATAGCAGATTGCTTTCATTGGACATG
GAAACATACTGACCAGAAATGCTTTGCTATTACAGGGGGAACAACCGACA
ATTGTGAATTGACCCAAAACCCAAGTTTTGTAAGTGGCATTCGAAACTGC
CAACAAACAAACGGACAACAATAAATTCCAACAcctcaaattattttaat
ataCATCATAATCGATATTGAAAGAGTAG

Coding sequence (CDS) from alignment at sc0000069:754219..754897

>TCONS_00006718 ID=TCONS_00006718|Name=TCONS_00006718|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0000069:754219..754897 (Clytia hemisphaerica)
ATGTTGAAAGTCAAAGAGATGATACTTGTTGTTGTGTTCctgatttttca
agttcaaacgGCTATTGGATGTGGGGTTCAGTATGGTCAAGACCATCCGG
ATAACAACATTGATTGGAAGATTCTGGGTACCTGGCAAGAATGTGCTATT
TGGTGCGACACTGTGTCTGGCTGCAACTTTTGGACATGGGCTCATAACGA
AGCCGGTGGGGAAAACCAACTTACATGCTATCTAAAATCGCAAGGATCAT
CTGGCGGTTTAACTAATAATTGGAGGGTGGTTTCAGGATCTAGAGGATGC
ACCAACTACGTTCAGCGCAATCGTTGCACACCACACTATGGCCGATATTG
GGATTGTTTCATTTCTTCCCAGTTTCATTACCCTGTCCGTTCTTGGCAAC
ATTGTGCTGCTATATGTAGTGGAATAGCAGATTGCTTTCATTGGACATGG
AAACATACTGACCAGAAATGCTTTGCTATTACAGGGGGAACAACCGACAA
TTGTGAATTGACCCAAAACCCAAGTTTTGTAAGTGGCATTCGAAACTGCC
AACAAACAAACGGACAACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003764XLOC_003764Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006718-proteinTCONS_00006718-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006718-exon-sc0000069-1491911889:754219..754897TCONS_00006718-exon-sc0000069-1491911889:754219..754897Clytia hemisphaericaexon
TCONS_00006718-exon-sc0000069-1510915933:754219..754897TCONS_00006718-exon-sc0000069-1510915933:754219..754897Clytia hemisphaericaexon
TCONS_00006718-exon-sc0000069-1575043694:754219..754897TCONS_00006718-exon-sc0000069-1575043694:754219..754897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:754219..754897 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.194095	0.181709	8.46005	4.1759	11.8538	14.5287	6.1749	6.09988	0	0	0	0	0.481451	0.251902	0	0	0	0	0.324178	0.578642	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000177Apple
IPR003609Pan_app
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0005576 extracellular region
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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