TCONS_00006717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006717
Unique NameTCONS_00006717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length712

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006717 ID=TCONS_00006717|Name=TCONS_00006717|organism=Clytia hemisphaerica|type=transcript|length=712bp
CGCCAGTGAACAACGGCTGTTTGTTTGATAACGAGTTGCTGATACGGACT
TGCTGATTTCTATTAAATAGGTAACTTTTAAACCATTTCAGTTCTATGTC
GGAGATCCCGTATTCTTGAAGCTTTTGCAGTAGAATAGCATGACCAATGC
CAATTGTGTCAAATGCTTTTGTCAGATCGATGTAGACAGCTCCTACTAGT
TCTCCTTTGTCGATTGAAGATCTAATGTCATCAAACAGTAGGGCACTAGC
AATTTTGGTTGATCGGTTTTTTCTGTATCCAAATTGACGATCGGTCAGTA
GGTTGTTATTTTCGAGGAAGTCAGAAAGTTGGCTTCTAACAGCtttctcc
aatatttttgaaaacgttGGCAAGATCGATATGGGCctaaaattttctgt
ttttttcccCAGATTTGTGGATAGGTGAGACAATAGCTTGTTTCCAAAGT
GTTGGAACTTCTCCTGAAGTGATGGACATGTTGATGACATAAGCGAGTGG
TTTGGATATCTCGGTGGCACAGTCTTTTAACATTCCAGGAGGTAAATCAT
CTGCACCTGTTGCTTTGTTGCGctttaaattttccaattctctttcgatg
aaaattttcaGTACGTAGGTGAAATTAAAGGCTTGAAGAGTTCTTAGTGG
ACGAATTTTAGGTGGTCTCCAAACGTGGTCGGTGAACATTGAGAAGGTCG
ATTTTAGCTTTT
Run BLAST on NCBI

protein sequence of TCONS_00006717-protein

>TCONS_00006717-protein ID=TCONS_00006717-protein|Name=TCONS_00006717-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MSSTCPSLQEKFQHFGNKLLSHLSTNLGKKTENFRPISILPTFSKILEKA
VRSQLSDFLENNNLLTDRQFGYRKNRSTKIASALLFDDIRSSIDKGELVG
AVYIDLTKAFDTIGIGHAILLQKLQEYGISDIELKWFKSYLFNRNQQVRI
SNSLSNKQPLFTG
Run BLAST on NCBI

transcript from alignment at sc0000069:748132..748843

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006717 ID=TCONS_00006717|Name=TCONS_00006717|organism=Clytia hemisphaerica|type=transcript|length=712bp|location=Sequence derived from alignment at sc0000069:748132..748843 (Clytia hemisphaerica)
AAAAGCTAAAATCGACCTTCTCAATGTTCACCGACCACGTTTGGAGACCA
CCTAAAATTCGTCCACTAAGAACTCTTCAAGCCTTTAATTTCACCTACGT
ACtgaaaattttcatcgaaagagaattggaaaatttaaagCGCAACAAAG
CAACAGGTGCAGATGATTTACCTCCTGGAATGTTAAAAGACTGTGCCACC
GAGATATCCAAACCACTCGCTTATGTCATCAACATGTCCATCACTTCAGG
AGAAGTTCCAACACTTTGGAAACAAGCTATTGTCTCACCTATCCACAAAT
CTGgggaaaaaaacagaaaattttagGCCCATATCGATCTTGCCaacgtt
ttcaaaaatattggagaaaGCTGTTAGAAGCCAACTTTCTGACTTCCTCG
AAAATAACAACCTACTGACCGATCGTCAATTTGGATACAGAAAAAACCGA
TCAACCAAAATTGCTAGTGCCCTACTGTTTGATGACATTAGATCTTCAAT
CGACAAAGGAGAACTAGTAGGAGCTGTCTACATCGATCTGACAAAAGCAT
TTGACACAATTGGCATTGGTCATGCTATTCTACTGCAAAAGCTTCAAGAA
TACGGGATCTCCGACATAGAACTGAAATGGTTTAAAAGTTACCTATTTAA
TAGAAATCAGCAAGTCCGTATCAGCAACTCGTTATCAAACAAACAGCCGT
TGTTCACTGGCG

Coding sequence (CDS) from alignment at sc0000069:748132..748843

>TCONS_00006717 ID=TCONS_00006717|Name=TCONS_00006717|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at sc0000069:748132..748843 (Clytia hemisphaerica)
ATGTCATCAACATGTCCATCACTTCAGGAGAAGTTCCAACACTTTGGAAA
CAAGCTATTGTCTCACCTATCCACAAATCTGgggaaaaaaacagaaaatt
ttagGCCCATATCGATCTTGCCaacgttttcaaaaatattggagaaaGCT
GTTAGAAGCCAACTTTCTGACTTCCTCGAAAATAACAACCTACTGACCGA
TCGTCAATTTGGATACAGAAAAAACCGATCAACCAAAATTGCTAGTGCCC
TACTGTTTGATGACATTAGATCTTCAATCGACAAAGGAGAACTAGTAGGA
GCTGTCTACATCGATCTGACAAAAGCATTTGACACAATTGGCATTGGTCA
TGCTATTCTACTGCAAAAGCTTCAAGAATACGGGATCTCCGACATAGAAC
TGAAATGGTTTAAAAGTTACCTATTTAATAGAAATCAGCAAGTCCGTATC
AGCAACTCGTTATCAAACAAACAGCCGTTGTTCACTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003763XLOC_003763Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006717-proteinTCONS_00006717-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006717-exon-sc0000069-1491911889:748132..748843TCONS_00006717-exon-sc0000069-1491911889:748132..748843Clytia hemisphaericaexon
TCONS_00006717-exon-sc0000069-1510915933:748132..748843TCONS_00006717-exon-sc0000069-1510915933:748132..748843Clytia hemisphaericaexon
TCONS_00006717-exon-sc0000069-1575043694:748132..748843TCONS_00006717-exon-sc0000069-1575043694:748132..748843Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:748132..748843 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.34893	1.30682	1.67707	1.87514	2.18769	1.57841	2.54678	1.95256	1.11519	3.16572	1.5185	2.87051	2.66082	2.0704	1.40427	1.46133	2.02527	1.89946	1.79946	1.56917	0.750141	1.89599	0.323484	0.955804	2.57473	1.14894	0.967138	0.722509	0.704568	0.239281
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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