TCONS_00006710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006710
Unique NameTCONS_00006710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006710 ID=TCONS_00006710|Name=TCONS_00006710|organism=Clytia hemisphaerica|type=transcript|length=433bp
GCTACCTTTACCATGGCAACAACATAATTACGACGATGATAAAATAAAAG
CCCTGGGTTTCCATTATGGAGCTGATGAATCAAACCACCATGAATCTGTG
AACCTCGGGAAAATCCCTTCCTGGTCTAAGTGTGGTATggaacacccctg
tatcaattACGGTCGCGTGGCTGCCGTGAAAGATCCCAAGATGGCCGACA
TCAATTTGAAGTCAGGATCATTTGACACTCCTCCGGTGGAACAATTCCAT
ATCGGGTTCGATCACCACTACGATGGAGAACATTTTGTTGATTTGGACCA
CGTGCTCTCGTCCACGGATGAAATAACTCATTACGTACATGATCACGATT
TAGATCACGATAAACACACAGACACGGATGTAGACAAACCGGATGATGAC
TCTGCGAAGAAGGGATACGCTATTAAGAATCAT
Run BLAST on NCBI

protein sequence of TCONS_00006710-protein

>TCONS_00006710-protein ID=TCONS_00006710-protein|Name=TCONS_00006710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
LPLPWQQHNYDDDKIKALGFHYGADESNHHESVNLGKIPSWSKCGMEHPC
INYGRVAAVKDPKMADINLKSGSFDTPPVEQFHIGFDHHYDGEHFVDLDH
VLSSTDEITHYVHDHDLDHDKHTDTDVDKPDDDSAKKGYAIKNH
Run BLAST on NCBI

transcript from alignment at sc0000069:432132..432564

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006710 ID=TCONS_00006710|Name=TCONS_00006710|organism=Clytia hemisphaerica|type=transcript|length=433bp|location=Sequence derived from alignment at sc0000069:432132..432564 (Clytia hemisphaerica)
ATGATTCTTAATAGCGTATCCCTTCTTCGCAGAGTCATCATCCGGTTTGT
CTACATCCGTGTCTGTGTGTTTATCGTGATCTAAATCGTGATCATGTACG
TAATGAGTTATTTCATCCGTGGACGAGAGCACGTGGTCCAAATCAACAAA
ATGTTCTCCATCGTAGTGGTGATCGAACCCGATATGGAATTGTTCCACCG
GAGGAGTGTCAAATGATCCTGACTTCAAATTGATGTCGGCCATCTTGGGA
TCTTTCACGGCAGCCACGCGACCGTaattgatacaggggtgttccATACC
ACACTTAGACCAGGAAGGGATTTTCCCGAGGTTCACAGATTCATGGTGGT
TTGATTCATCAGCTCCATAATGGAAACCCAGGGCTTTTATTTTATCATCG
TCGTAATTATGTTGTTGCCATGGTAAAGGTAGC

Coding sequence (CDS) from alignment at sc0000069:432132..432564

>TCONS_00006710 ID=TCONS_00006710|Name=TCONS_00006710|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at sc0000069:432132..432564 (Clytia hemisphaerica)
ATGATTCTTAATAGCGTATCCCTTCTTCGCAGAGTCATCATCCGGTTTGT
CTACATCCGTGTCTGTGTGTTTATCGTGATCTAAATCGTGATCATGTACG
TAATGAGTTATTTCATCCGTGGACGAGAGCACGTGGTCCAAATCAACAAA
ATGTTCTCCATCGTAGTGGTGATCGAACCCGATATGGAATTGTTCCACCG
GAGGAGTGTCAAATGATCCTGACTTCAAATTGATGTCGGCCATCTTGGGA
TCTTTCACGGCAGCCACGCGACCGTaattgatacaggggtgttccATACC
ACACTTAGACCAGGAAGGGATTTTCCCGAGGTTCACAGATTCATGGTGGT
TTGATTCATCAGCTCCATAATGGAAACCCAGGGCTTTTATTTTATCATCG
TCGTAATTATGTTGTTGCCATGGTAAAGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003756XLOC_003756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006710-exon-sc0000069-1491911889:432132..432564TCONS_00006710-exon-sc0000069-1491911889:432132..432564Clytia hemisphaericaexon
TCONS_00006710-exon-sc0000069-1510915933:432132..432564TCONS_00006710-exon-sc0000069-1510915933:432132..432564Clytia hemisphaericaexon
TCONS_00006710-exon-sc0000069-1575043694:432132..432564TCONS_00006710-exon-sc0000069-1575043694:432132..432564Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006710-proteinTCONS_00006710-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:432132..432564 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.53412	1.54448	1.2553	1.57901	0.640764	0.843901	2.03626	4.00328	1.60159	0.330639	2.56741	1.26578	2.52805	2.51601	1.34902	4.1501	2.25905	1.34053	0.336729	0.352362	1.68447	2.46487	1.08959	1.1557	3.57102	6.82939	0.868697	0.927097	0	0.179105
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top