TCONS_00006684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006684
Unique NameTCONS_00006684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006684 ID=TCONS_00006684|Name=TCONS_00006684|organism=Clytia hemisphaerica|type=transcript|length=1389bp
GAAGAATATCAAGAATGCAAATTGAAAGAATGTCCAGTCGATGGAGGTTA
CAGTTCATGGTCATCGTATTCTGAATGTTCAGAAGCATGTGGAGATGGTT
TAATGACAAGAAAACGAACATGTACAAATCCTTCACCTGCTCATGGTGGA
AAACAATGTCAAGGAGCTTCTACTGAAGAAAAACAATGCAAAGTCAAAGA
ATGCCCAGTCAATGGAAAATGGAGTTCATGGGGAGGTTATGGAGGTTGCA
GCAAACGATGCGGTGGAGGCTTACAAACGAGAAGTCGTTCCTGTAATAAC
CCAGCTCCCGCACACAGTGGTAATCCATGCAAAGGAAGCTCAACTTCATC
CAAGAGATGTAATACTCATGAATGTCCAGTGAATGGTAATTGGGGTAAAT
GGTCAGGATTCGGTGTCTGTAGTAAGAAATGTGGAGGAGGAACGAAATCT
CGTTCAAGAAGATGTAACAACTCTTCACCAGCTCATGGTGGACGTAAATG
CTCAGGATCTTCAACTCAATCTGCTCAATGCAATACCCAACACTGTCGTG
TTGACGGAGGGTTAAGTACGTGGTCAGCTTTCTCTAAATGTTCGAAAGCT
TGTGGTGCTGGTCACACTCACCGTACACGATCCTGCACCAATCCCTCACC
TGCACATGGTGGTAAAGGATGTGAAGGCGCATTGGTTGAAAAGAAAAGTT
GTAAAGTCAAAGAATGCCCAGTCAATGGCAATTGGGGATCATGGGGTTCA
TATGGATCATGTGACAATAAATGTGGTGGAGGTGTTCAAGAACGATTCCG
ATATTGTAATAATCCCGCCCCCGCCCATGGTGGTAAAGGATGTCCTGGAT
ACGCCAAAATGGTCAGAGCTTGCAATACTCATAAATGCCCAGTCAATGGC
AATTGGGGCAAATGGGGAGGTTTCAGTTCTTGCAACAAACGATGTGGAGG
AGGTCTACAAACAAGATACAGATCATGTAATAACCCATCACCTGCACATG
GTGGAAAGTCATGTCCTGGTTCTCACGCTCACTCACAATACTGTAACACT
CAAAAATGCCCAGtcaACGGCAATTGGGGCAAATGGGGAGGCTTCAGTTC
TTGCAACAAACGATGTGGAGGAGGTTTACAAACAAGATACAGATCATGTA
ATAACCCAACACCTGCTCATGGTGGAAAATCATGCCCTGGTTCTCCCGCT
CACTCACGATCTTGTAACACTCAAAAATGCCCAGTCAACGGTAATTGGGG
CAAATGGGGAGGCTTCAGTTCTTGCAACAAACGATGTGGAGGAGGTCTAC
AAACGAGATACAGATCATGCAATAACCCAACACCTGCACATGGTGGAAAA
TCATGCCCTGGTTCTCCCGCTCACTCACGATCTTGTAAC
Run BLAST on NCBI

transcript from alignment at sc0000069:528767..541017-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006684 ID=TCONS_00006684|Name=TCONS_00006684|organism=Clytia hemisphaerica|type=transcript|length=12251bp|location=Sequence derived from alignment at sc0000069:528767..541017- (Clytia hemisphaerica)
GAAGAATATCAAGAATGCAAATTGAAAGAATGTCCAGGTTTGACATTTGT TTGACAATACAGGGTGTCCGGAAAAAAAAGTATCGAATTCGAACATGATT CTGAGTAGAAGGTTGTTACGTGTGTTTAACAAAATGTAAGAAAATATACA GTATACCAACACAATAATTGTTTTTACAATAGTCATTATGATTAAAAAGA AGTAACTTTCTTTACAATTTTCATGACGTTAAAGTTATTGGGAATTGTTT TTTTGTAAAAGTTATTCATAAAAGATGTCTTGTGACAGTTTATATGACAA AGAGAGAAACTTTGATAAACATTGCAAATTTAGTGAAACACACACAAGAA CCTTCTTTTTATAGAAGTGGTACGACTCGATACTTTTTTTGGGTCACCTT GTAAAGTCCTGCAAAGATCACCAACCTAGCAGACATTAAGGAGTGAGCTG GAGTTTCTATAAGATACTTCACTAATTGGTCATTTGAAGTAATGACGCGT TCTTTAGAGAAAGTAACAAAATCTCATTATTGCTTTTCTTTCATTTCAGT TGATGGAGGTTATAGTTCATGGTCATCGTATTCTGAATGTTCAGAACCAT GTGGAGATGGTTTAATGACAAGAAAACGAACATGTACAAATCCTTCACCT GCTCATGGTGGAAAACAATGTCAAGGAGCTACTATTGAAGAAAAACAATG CAAAGTCAAAGAATGCCCAGGTATATTCACGCTTCTACTTGATTCATATG TTTCTATCACTAAATAAACAAAAAGGGAATCCATGTATGCCATTATATAA CCAAAAATCCGATATTGATCCCCTGACAAGGGAAAGTTGCCCGGACAATG CACTCTTAATCTGCCATGGCAAAGACTTTTTCAATGAGCCATTTCTGCCC TAAACTCTCTTAAAGAATATGGCATTTATCCATGACATAGTCGGAATGAC ACGGACGAGTGAAAGATTTAGTTATTTGTTTGGGTTTATTACAGGAAATA TGTTTTGTATACGTGTTTGTCCCAAAGCAATTTTGAGTACACCTGAAAAT CGGACCGGTATTTAGACAGTCTTTTAAGGGCCGGTAAAATTACTGGTCAA ATAGTACAAAAAGGCCGGTCATTTCAATGCATCCGGTCCATAACCAGGCT CGATTAACCGGTCGACATCCTTTTTAAAACAATTTGTTTGATGTAATCGT CATTAACAAACACTAATGAACGGCCCGGACTGGTAAAACGTGCATCCATG AGTGTCTACGAGCGGTCAGGACCGTTTGAAATCAGATTTTATATAAGGTC TAAAGGCCAATCTAAAACAAAAACTTGACTGCTATTAGACCGCTCGTAAT ACCGTACCAAGACCGGTCCGATTTTCAGTTAATTTAAGTCGTCCAGTTTG TGTAATAATGCAAAGTATTAGCTAGTACCCAGCTCTCTGGCTAGTCACCA TCCAAAAACTGACCTCCTTGCGCACCTCGCATCGTATCTATTTATATGGA GGAAGGTTCTGAGAGATCCGTGTCAAATAGGAATCGAATATCAGTCACAT ACCCATGGCACTCTAAGCGCTCAAAGTGCTTGTCCCAATACTCCTTTTTT AATAAATAATCATTTTCTTTCGTTTCAGTGGATGGAGGTTACAGTTCATG GTCATCGTATTCTGAATGTTCAGAAGCATGTGGAGATGGTTTAATGACAA GAAAACGAACATGTACAAATCCTTCACCTGCTCATGGTGGAAAACAATGT CAAGGAGCTTCTACTGAAGAAAAACAATGCAAAGTCAAAGAATGTCCAGG TATAATTCCTAGACAACTTTTTATCCAATGGGAAATAATTATTGTAGATT TCATACTGACTTACTACTAGACCTTGCTTTCAACTCATTTAGATAAATGT TACGCCCTTTCTCCTAGCTTGAGAGCATGAGTGTCTTTGTCCTTGGTTTT AGAATCAAAGGAAGGAATAGATTTCTTGGTAGATATTAGATTGCCATATA TTTAATGTATTCTTCTTTTAAGTCAATGGAGGTTTCAGTGAGTGGTCATC GTACGGTGTTTGTAGCAAGACCTGTGGAGGCGGAACACAAGAACGAAAAC GAGAATGTAACACTCCCAAACCAGCTCATGGTGGCGAAAACTGCAAAGGT GAAACACAACAATCAAGAACGTGTAAACTCAAAGAATGTCCTGGTAGGTT TTTCTTTTCTCAAATTTCATTGTATTATCTGTGCTATACTTTTGAATCTT CGGTCATTTCAATTTTTTGCAGGGCACCTTTCACTGCAAAAATAACCTTG TTCTTAATTGGAGGGTACACATTTACAAGCTGTGCTAAAATACAAAATTT TAATTATCATTTTACCTACCTTCAAAGTTACTACCGGTCAATCCAAGACA TTTCAGACATTTTATTTTTATATTTAGAAGCCCCCCCTCTACTACTGTAG CTATACGACATTTCAACATTAGTCATTAGGGAGGTTAATTAATTACAGAC CTACCTTAAGGAAACTATTTTTCGCGATTTCTCGGCAACACTGTAAAAAT TTAGAACCCGCGATATATAAATTTGGACATTTTTCTTTAAAAAATCTGAA AAAAGATTTTTTTTTTCGACCGCACAAATTAGCTCTCGTTGAAATTAGCT CCCTTATGAAAGTTGGAAAGATATTTTCTCTGTTTGCTAACTACAGTCGA CGGTGGTGTAAGCCAATGGTCAGCATTTAGCAAATGTTCAAAATCGTGCG GTGTAGGAGAACACGAAAGAACACGAACCTGCACCAACCCGCCACCACAA CATGGAGGAAAAGAATGCGATGAAGATTTGAAAGAAGTTCAAGAATGTCA AATCAAGAAATGCCCAGGTATTTAAAATGTGTTTTATAGGACTTCAGTCG GCTCTCTCTAATTCGATCTCAACGGGGTATCTAATTTCTATTTATTATTC TATTTTTATCTATCTATATTCTAATCTAATTTGTTCGAGTTATAGAGAGG TTCGAATTATAGAAAGCATTTAGCTAAGGTTTTTCCTTGAAGGGGAATAA CGGTTTGTTCGAGTTATGGGACGTTTCGAATGATAGAAGTTTGAATTAGC GAATATTGACTGTATTTTTAATTTTTTCTGAAAAAGTGTATCCTAGACTC AAACAATGCATTATTCCGATCTCAGAGAGATGAAAATGACGAGATATTAA TAAAAGAGGAGTATTTTACCCATTCGACACGCTCTCTGTTTGTGTTTCAG TCAATGGTGGCTACTCTGATTGGTCAGAATTCGGTGAATGTTCAACAGAA TGCGGACCTGGTGTACAAAGCAGAGAAAGAGAGTGCAACAATCCCTCACC AGCTCATGGTGGCAAAGGATGTGTTGGTGAAGCTAAAGAAACAAGAAAAT GTGAAGATATGCCCTGTCCTGGTAAGATAATCTGCATGTTGTTTAATATG AGAAAAACTTTTTCGTTTCGAGATTTTTCGTTGTTTAGTATTGCACTTTC TGATTTCCTGAGCTATTTGCTACAGTTAATAGACCTGTTCTCTGAAGGTA GTTTTTATGTTTTGCCCTGAATTTTGCTTTGCTATTTCACATCGTATAAT TGGGGACTTCATCGGATATGCTGATAAAGTCACGAAAGATGACGAAAATT TCTACCTAAGCAGTCGCTTCATTTTTTATGTTTTAAAAATTTGCTGCTTC AACATTTTACGTTTTGTATAATTGGGGAAATATAGTTTTGATACTTTTAA AATTCCATCCTTTTCCTTCAATTTTAGTCGATGGAGGTTACAGTTCATGG TCATCGTATTCTGAATGTTCAGAAGCATGTGGAGATGGTTTAATGACAAG AAAACGAACATGTACAAATCCTTCACCTGCTCATGGTGGAAAACAATGTC AAGGAGCTTCTACTGAAGAAAAACAATGCAAAGTCAAAGAATGCCCAGGT ATGCTTCATTTAAGATATAACTCTAATATAATTAAATCCTGTCCATCTCG GAGAGGGTCTTACTCCAATTACTCCATATCTTGTAGAATTGGCTATTGTA TTTGTAGGTTTTCTTTTGTCACAACATCAGCCATACCTAAGCTATGTCAT ATTTCTTTCATTGCGCTCGTAAAACTCCTACGTCTATAGAAGTGCGCATA GACCAAGAGTAAGGCATAAAAGCCTGGAGCTAGGTTATGTCATAAGTCAT ATCTTCCTTCGTTACGCTCGTTAAACTCCTACGCCCTATAGCAGTGCCTA GATAGACCACGAGTAAGGCCTAGAAGCCTGGAGCTGTCTATCGCATCAGT TTGCCATACCATGTATGATAACATGTTACTAAGGCAACTTGGTTAAGATA TTTTTTCATAAAAGTAATGAAATTAATGAGACGTAATTTTTATTTTTACA GTCGACGGAGGTTTTTCTTCATGGTCATCATACTCCAAATGTTCTGAACC ATGTGGTGAGGGAGAGAAAACACGATCACGAACGTGCACCAACCCTTCAC CTGCTCACGGTGGCAAAGATTGCAGTGGATCAAAAGTACAAGTATCACCG TGCAAAGTTAAAGAATGCCCAGGTTTGTTTGTTTTTAACACAGACTTCTT TTACTAAAACTATATGGATAGACCTACTCTGTATTTCCCAAGCAACGGCA CAGTAAAGTTATGCTTGATTGGATACTCCATTTTACCGAAACCCGCCGTC TTAAAGAGTCCTGGTCTTCCCCAGCTGTTTGATCAGATTTTTTGGAGACC TTTTGCAAATTATTGTTTTTCATTTAAAATTTTCTAGTAGCAATAAAAAA AGTAAAATTTTCAATATACTCTATCTAGCCTTTTTCTTATCTAAAAAAAT TTGTGATGTAGTTTATGAGCGTTACCCTCATTGGAGGCTCTCTGCCCTTT ACTTATATATTTAAAATATTCTGACTCTCTGTAAAGCACAAAACTTTATA ATTATTTTGTTCTTTCAGTGGATGGAGGATACAGTTCATGGTCATCGTAT TCTGAATGTTCAAAAGCATGTGGAGATGGTTTAATGACCAGAAAACGAAC GTGTACAAAACCTTCACCTGCTCATGGTGGAAAACAATGTCAAGGAGCTT CTATTGAAGAAGAACGATGCAAAGTTAAAGAATGTCCAGGTAAAAACAAG AAAAAGATACTTATGAACTCCAATAGAGAAACAAGACTTAAAAAGGTTCA AAGACTTCGATTTTTCTTCACTTTAAGTGTTGACAGTTAGTCTATAGTTC TGGATACTAAATTTTGTCAATTAAACTTTAAATATCTCTTCCGTTCTTGC TTAAAATCTTTATGAAGACGTCTCCAAATATCCGCACTCCTAACTTATTT TACATATCTGTGATTTTGCTTCAGTCAATCTGACATCCTGCAAGTACAAA TACATAATCTCGTGCTAATATTTGTAGAAAGGATGCTAATATTCTGTCAA AGAATACTTTTAAATCTTACGCTCTCCGCTAAAATTCTTCGTATTCAACA ATCCATCACGCCTAACTTTCACTTTTAACCATAGTTGATGGAGGCTTCAG TTCATGGTCATTATACGGAGAATGTTCAGAACTTTGTGGTGGTGGTGAAC AAGAGAGAAGTCGGACATGTACAAACCCTACACCTGCTCATGGTGGGAAA GATTGTGAGGGAAAGATCGAAGAAACAAGACCGTGTAACACCCAGAAATG CAAAGGTATAATTGATTTCTGATGTGTTCCCTTTAATGTGGTATATATAT GATATGGGATGTCATTCAATTAAAATGAGATTGGNTCTGATGTGTTCCCT TTAATGTGGTATATATGATATGGGATGTCATTCAATTAAAAGATTGAATT CCTTCTTCTTTTTCTGTCTAAATTTTTGAAATATATATACTGCACACCTA ACTCTTTATCAACATACGATGGCCCCCTCCCCTAGGCACTAATGCGAAAC GGTGATATCGCCTTAGGTAACAATTAAATCGTTTCTTCTTTGTAAAAGAG GAACTTTTAATATACATAAACCTGGCCTTACATTTTGAAATTACTTATGA TCTGTCAAATTATGAGTTTCGGGTTCATTTGTTAAAAAGGATTTCATATA ACACCAAAATATTATCAAAATATTCCTTCACATAATATCGAACATATTTC ATTGTTATTCTTACTTATTGGCCGGGTACCTTAGTCGATAGAGCATTTGC CTTTCATTCCCAGGGTTGTGGTTCGCTCCCCGGTAACCGTCAACTCAACC AATGAGTAGTTTAATCTGATCTAGGTGGTGAGTTACTGGGAGCTCAGAGT AGTTGTGGCGCTCCACCTCAGCGTTCGACATTCCAGGTCAAGCCCAAATA GAAAAGGGAATAGAAGTGGGGATGGACTCCCTTACTCCCGGCAGCGCCGA AAGCCACGAGATTAATGTACTTGCTTACTAATTATTTACTTATTTAAAAT ATGCTTTATATATTCTCATCACTATATCTATAGTGGACGGTGGATATGGC CCTTGGTCACCATACAGTGCTTGCAGTAAACCATGCGGTGAAGGAGAAAG ATATAGAACAAGAAAATGTGTTGAAACGAGACGTGATTGCTCTGGTCCAT CAAGATCTGTCCAAAAATGCAAAGTCAAGTCATGTCCAGGTCAGAGAAAG TTTTTGGAAATTTTACGCGGTTAATCCTTTATATTTTTGCCAGTTTTCTT GGGCTTTTTAAGAGTTTTCAAGCAATGAAGTGGTAAAGAGAAAACTTTAT CAAATTCAAAAATCAATTATGATCTTTCAGCTTCTTCTGGTTTTTACTAC TACAATATTTGTCATACTTTCCTTGGATATATTTCAGAAATAAAAATGGA ATCTCATACATTCTAGTTTCTTTCAAAAACTCATGAGATCTAACTATGAA ATGATTAACTTCGTATTCTTGTATTTTTGATACATTGACATTTAGACCTA TGTGACATTTTAACCAGTGGCTAGCAGTTTTTTTTTCTCTCGTAGTATTT TAATCAACAATTATTTTCGTTTAGTGGACGGTGGGTTTACCAACTGGTCA CCATTCACAGCTTGCTCTCGAACATGTGGTGTTGGAACACAAGAGAGAAC ACGATCGTGCACAAACCCTTCACCAGCTCATGGTGGGAAAGAATGTGTTG GAAACACCAAAGAATCAAAACAATGCAAAGTTAAAGACTGTCCAGGTTGG TACAATACTTAGACTCAAATTTGTTTTTGTTTGTTTTCTAAATGTAATTC TCCGATCACCTTCATCAATGAAGGTTTCGAAACAATTGGCCTGCAGTTAT CTAACTGTTGCCCTCTTTGATTCAAGTAACAGTACGGCAGTGTTGCATAT AAGGAATTGTGACTTGCCCGGTGATTTTTCAAACAATTTTCCTGTGACAA AATAGCTCTAGATCTAGATTTAAAACACCACCAAATGTTTCTCTAGTCAT TGAATGTTAATGATTATGAGAAGATAAAACAATTAACAAATAAAACAGAA CAGGTACAAAAAGTGCTTCGCTACATTTTTTCAACAAGCAATCTCAAGTT TTCACCGGAGAAAAGTAAAACTTAACCTTAAATGACTTAAATGTCCGGTT GAAACGATGGAAACAAAAAACCGGCCGTTATTTGCAGCTCTGGTGTAGTA CAGCAACTTTTCGATTGGCTGGTCAATTCGACTATTTTGTTCTTTTAGTT GATGGAGGTTATAGTTCATGGTCATCGTATTCTGAATGTTCAGAAGCATG TGGAGATGGTTTAATGACAAGAAAACGAACATGTATAAATCCTTCACCTG CTCATGGTGGAAAACAATGTCAAGGAGCTTCTACTGAAGAAAAACAATGC AAAGTCAAAGAGTGTCCAGGTAGAGTGAGATCTGTTAGAAACTTATTCGA CTATGTTTTCGTGACTTCGTTTTAGCTATATAATGACTCAATCTTTTCAA TCATCTCCCAAAACTGATGAATTTGCACCCATAACTGCTACACTGTAAAT CAGAATTCAAAGTGGAAAAGTAGCTTATTTTCCTTTGTTCATTGAGTGTT ATGAAAATCAACATAAATTACTAAATTTAAGTTGATGAAATTACACGCTA CACGAGGTTTAAAATGTTGCATTCGACATCACTTGTATCAAAGTTTCAAA ACAATTTGCTTGTAGATTTTCATTTAACATCAATTCTTTTTTTTCGACGA TAGTCAATGGAAAATGGAGTTCATGGGGAGGTTATGGAGGTTGCAGCAAA CGATGCGGTGGAGGCTTACAAACGAGAAGTCGTTCCTGTAATAACCCAGC TCCCGCACACAGTGGTAATCCATGCAAAGGAAGCTCAACTTCATCCAAGA GATGTAATACTCATGAATGTCCAGGTACCATTTGTATGATTATCTTGCAA CTATTATTGGACTATTTGTTCAGACATTGTTTATTCGGGCTGCATGAAAT ACATTGATAAAGAGAGTTTCGGGATTGAAAATTATGCCAAGAAATAGTGA ATTTGTCCATCTAAAATTCGATGCCATCCTTATGTTTATATTGTCTATAC ATCTACTTTGAACTGAATTTCATTCGCTAACAAAAATGCAATAATTTTTC ACCTTAACCGTCAAGTTGAAAAATTATTGAAAAATTATTGAAAAATTACT TCATTTTAATGTGATATTTCACTTTTAATCTTCTTTCCGTCTCAGTGAAT GGTAATTGGGGTAAATGGTCAGGATTCGGTGTCTGTAGTAAGAAATGTGG AGGAGGAACGAAATCTCGTTCAAGAAGATGTAACAACTCTTCACCAGCTC ATGGTGGACGTAAATGCTCAGGATCTTCAACTCAATCTGCTCAATGCAAT ACCCAACACTGTCGTGGTATGAATTCACTACATTATTGGAATAATTTTTG CGGAAATTAATTTTAGTGCTTTCGGAACCATGAAATGCAATTTTTTCCCA ATTTTATCGAAAAATGAAAGAAATTTGTCCACAAAAGGGCAAAATCGAGA CAATTAAAACCCGCGAAATGCAATTTTTCTGATTTATTTTTTCGACCGTG AATAATTTTTCCCATGAATGATTCTCATGTAAAATTTAAAATAAAAAAAT GAAGGAAATTACGTCAAAAAAAGATGCTGATTCGTGAAAATTCTTTCCCT GCGGTTTTTTTATTTTATGTGTTCGCGAAAACAAATCCCGCAAAAATTAT TTCGTTTAAATGTCTGTTCGCGAAAATTAGTCAGTCCACTTAAAGGATCG CTTTTTGGATTTTAAAACCGTTAAACATTGCTCGTTTTCGTGATTCAGAT TTTCTTAATTCTTCATTTAGTTGACGGAGGGTTAAGTACGTGGTCAGCTT TCTCTAAATGTTCGAAAGCTTGTGGTGCTGGTCACACTCACCGTACACGA TCCTGCACCAATCCCTCACCTGCACATGGTGGTAAAGGATGTGAAGGCGC ATTGGTTGAAAAGAAAAGTTGTAAAGTCAAAGAATGCCCAGGTATCAAAA GTTTACTCTTAGTGCTCTTGGAAAAGTTTTTAGTTTTGAAATTATTTGTG CTGGATTAATCCAGAAGCGTTGACAAGGGGGTGTTGGGGAGCAGATTCTT TTTATTTGAATAGATAATTACCGTGTCATAGAAACCTGCTCCCCTACGCA AATTGTGCGTCCCGCTTGTCTACTGAAGCTACTGTACAGATTACAGTCAA TATTAAATTGGTCAAAATTTACTCAGCTTTCTGCTCAGCCACGATAAACT TCCAATATGAACAATATTTACGGTTTAAGTAGACCGGTATAATCTACGTA ATAAAAATAAAGAGCTTGAGTTTAGCTGTTACGTACCCACTAGCTTTGAG TACTTCTATCTGTTAACTTAACTACACCATTCTGTTTCATGTCTTAGACA ATATCCTAAGAGATAAGACTTTGAATAAGCGAATAACATGATTCTACTTC ACAGTCGATCTAAATATCTTATCATTTGTATTTCCCCTTTCTCTTACCCA TAGTCAATGGCAATTGGGGATCATGGGGTTCATATGGATCATGTGACAAT AAATGTGGTGGAGGTGTTCAAGAACGATTCCGATATTGTAATAATCCCGC CCCCGCCCATGGTGGTAAAGGATGTCCTGGATACGCCAAAATGGTCAGAG CTTGCAATACTCATAAATGCCCAGGTAAGGTATCTATTTTGAACTTTACC GCAGAAACCTTTTAAACTATCCATAATGCATTCAAACCAGTCAAAACGTT TATATCATCTTCAGTTACCAGTTAACAACTTTTATTTATATCATAGTCAA TGGTAATTGGGGCAAATGGGGAGGCTTCAGTTCTTGCAACAAACGATGTG GAGGAGGGGTACAAACAAGATACAGATCATGCAATAACCCAACACCTGCA CATGGTGGAAAATCATGTCCTGGTTCTCACGCTCACTCACAATCGTGCAA TACTCAAAAATGTCCAGGTACTTACTTTTCAAGATTCAAATTATCAAATC ATGAAGTCAATCCCTAACTTATCTACATATTTAACGTCCGTCTCAAAAGT ACATGTGGACCCTTTATTTTGTAACATTTTTTCAGCATACGTTCATGCTG TGGTAGAATGTTATATACCGCTGTAAAGATATTTTTCGCCACAGCCCTCT GAAGTTTTTGTCTATTTGTGGTCATTTTCAGCCGTTTCAGCCCTACTTCA CAGGGCTTTATTAACTTATTATCAACAAAAATAAGAGCAGCAGATTTAAC TTTTCAACCAGAAAATAAAATTTTCATCTTCAACTTTTCAAAAATCTCTA ATCTAATATAGGTTAATAGGTTATTCTCCTGAAAATATCTTTCCAACTCT GTATAACTTTTTATCATAGCATAAATGGGTGCTGGCAAATTGTTACAAGG TTTAATGTCCACGTATACTTTTGAAACCAATCTTGGTAACAGAAAAATCC TTTTTGTTTGCACAAACCAGGGCTCAGCGAAATAAGTTTCCCTTTTTACT GATGGCATCAATTATTTCCATTAAGTTCAACGTTGAGAGTTCTTCAATTT TTAGCCCCCTCCCCAACTCCTCCTTTCTACAGGAACACGGACACACTGAC TTTTTTCAGCTTTTTTTTCAAAAATATTATTTATCTTTTAGTCAATGGCA ATTGGGGCAAATGGGGAGGTTTCAGTTCTTGCAACAAACGATGTGGAGGA GGTCTACAAACAAGATACAGATCATGTAATAACCCATCACCTGCACATGG TGGAAAGTCATGTCCTGGTTCTCACGCTCACTCACAATACTGTAACACTC AAAAATGCCCAGGTATATGATGTAACGTTAATCGATCAATGAAAAAATTG TGATAATTAGCTGTTAAAGTGCTCTAGATTTGTAATTTCACATCTGAGAA TGATAATTAGCTTTCAATCTGAGCTTGGAAGTTTCCTTTTAGCTTATTAA CCGACCATTAAAAGAATCTACATACCAACGACATTACTCATGTGTGATAT GCTACAACGTTTCTAAAAGAGGTGATGTGTTAACTCCAAAGTCATTACTA GAGAAAGTTTAACCTGAACTTTGTTTTTTTTATTTAGTCAACGGCAATTG GGGCAAATGGGGAGGCTTCAGTTCTTGCAACAAACGATGTGGAGGAGGTT TACAAACAAGATACAGATCATGTAATAACCCAACACCTGCTCATGGTGGA AAATCATGCCCTGGTTCTCCCGCTCACTCACGATCTTGTAACACTCAAAA ATGCCCAGGTAATTTTTAAGCCATAATATTATCATCAATCGATAATTTCA AATTAACCATTATCGACGTTTGTTTGGTCATTTAGTTAGTTTACAGTTAC TTCATAATGGCACTGACTGAATTCTTCATGGTTGTCCATGTTTAAAAATT AAATCTGAAGCTAAGAGTATAATTATTAAGTCGTGGATAATGTACTGACA ATCGATAAACTTAATTGGTCAGAGAAGGTGGCAAACAAGTATAATTACTG CGAACTAATCATTAAGCTGCTAAGTTTGATTTTTGTTTGTTTCATGCTTT TGGACCCAATATATGGAGTTTAAAAAGTTTATTTGTCATATTTTAGTCAA CGGTAATTGGGGCAAATGGGGAGGCTTCAGTTCTTGCAACAAACGATGTG GAGGAGGTCTACAAACGAGATACAGATCATGCAATAACCCAACACCTGCA CATGGTGGAAAATCATGCCCTGGTTCTCCCGCTCACTCACGATCTTGTAA C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003741XLOC_003741Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006684-exon-sc0000069-1575043694:540981..541017TCONS_00006684-exon-sc0000069-1575043694:540981..541017Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1575043694:537070..537240TCONS_00006684-exon-sc0000069-1575043694:537070..537240Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1575043694:532644..532814TCONS_00006684-exon-sc0000069-1575043694:532644..532814Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1575043694:532152..532322TCONS_00006684-exon-sc0000069-1575043694:532152..532322Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1575043694:531527..531697TCONS_00006684-exon-sc0000069-1575043694:531527..531697Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1575043694:530844..531014TCONS_00006684-exon-sc0000069-1575043694:530844..531014Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1575043694:529706..529876TCONS_00006684-exon-sc0000069-1575043694:529706..529876Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1575043694:529260..529430TCONS_00006684-exon-sc0000069-1575043694:529260..529430Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1575043694:528767..528921TCONS_00006684-exon-sc0000069-1575043694:528767..528921Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1510915933:540981..541017TCONS_00006684-exon-sc0000069-1510915933:540981..541017Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1510915933:537070..537240TCONS_00006684-exon-sc0000069-1510915933:537070..537240Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1510915933:532644..532814TCONS_00006684-exon-sc0000069-1510915933:532644..532814Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1510915933:532152..532322TCONS_00006684-exon-sc0000069-1510915933:532152..532322Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1510915933:531527..531697TCONS_00006684-exon-sc0000069-1510915933:531527..531697Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1510915933:530844..531014TCONS_00006684-exon-sc0000069-1510915933:530844..531014Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1510915933:529706..529876TCONS_00006684-exon-sc0000069-1510915933:529706..529876Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1510915933:529260..529430TCONS_00006684-exon-sc0000069-1510915933:529260..529430Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1510915933:528767..528921TCONS_00006684-exon-sc0000069-1510915933:528767..528921Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1491911889:540981..541017TCONS_00006684-exon-sc0000069-1491911889:540981..541017Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1491911889:537070..537240TCONS_00006684-exon-sc0000069-1491911889:537070..537240Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1491911889:532644..532814TCONS_00006684-exon-sc0000069-1491911889:532644..532814Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1491911889:532152..532322TCONS_00006684-exon-sc0000069-1491911889:532152..532322Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1491911889:531527..531697TCONS_00006684-exon-sc0000069-1491911889:531527..531697Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1491911889:530844..531014TCONS_00006684-exon-sc0000069-1491911889:530844..531014Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1491911889:529706..529876TCONS_00006684-exon-sc0000069-1491911889:529706..529876Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1491911889:529260..529430TCONS_00006684-exon-sc0000069-1491911889:529260..529430Clytia hemisphaericaexon
TCONS_00006684-exon-sc0000069-1491911889:528767..528921TCONS_00006684-exon-sc0000069-1491911889:528767..528921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:528767..541017 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0.0716898 0 0 0 0 0 0 0.236378 0 1.30371 1.05761 0 0.103215 0.43469 0.0961835 4.45387 8.76291 3.43157 1.84275 0.800974 0.215636 0 0 0 0 0 0
Blast
BLAST of TCONS_00006684 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 2.378e-88
Identity = 150/337 (44.51%), Postives = 208/337 (61.72%), Query Frame = 1
Query:  379 VNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPSPAHGGKSCPGSHAHSQYCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCN 1389
            V+G + +WS +  CS  CG G + RSR CN   PA+GG+ C GS  +   C  + C VDG  S WS + +C+++CG G+  RTR+C NPS  HGG+ CEG  VE   C ++ CPV+G W +W  +G+C   CG G Q R R CNNP PA GG  C G    ++ CN   CP++G W  W  +S+C+  CGGG + R R C++P P +GG+ C GS   S +CN+  CP +GNW  W G+ +C++ C GG   RYR+C+NP P++GG++C G  +  + CNT  CPV+G+WG W  +S C+  CGGG +TR R C++P P  GG+ CPG       CN
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCN 4864          

HSP 2 Score: 276.944 bits (707), Expect = 1.000e-80
Identity = 140/321 (43.61%), Postives = 196/321 (61.06%), Query Frame = 1
Query:  271 LQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPSPAHGGKSCPGSHAHSQYCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCNTQKCP 1233
            +Q RSR CN P PA+ G PC+GS    + C    CPV+G+W +WS +  C++ CG G ++R+R CNN S  HGGR C G++ +   CN + C V G  S W  +  CS++CG G   R R C NP PA GG  C+GA  + + C  + CP++G W +W S+ +C   CGGG ++R R C++P P +GG+ C G       CN+  CP +GNW  W G+ +C++ C GG   RYR+C+NP P++GG++C G  +  Q CNT  CPV+G+WG W  +S C+  CGGG +TR R C++P P  GG+ CPG       CN Q CP
Sbjct: 4549 IQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869          

HSP 3 Score: 271.166 bits (692), Expect = 9.108e-79
Identity = 148/325 (45.54%), Postives = 202/325 (62.15%), Query Frame = 1
Query:   88 CGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPSPAHGGKSCPGSHAHSQYCNTQKCP 1062
            CG G+  R R C  P PA+GGK CQG+  E + C+ K CPV+G WS W  +  C++ CG G QTR+R+CNNP+  H G PC+G++     CN   CPV+G W  W  +G CS+ CG GT++R+R CNN  PA GG  C G+ TQ   CN ++C + G  +TW+++S CS +CG G   RTR C++P P +GG+ CEG+ V+   C    CP +GNW  W  +G+C   C GG   R+R C+NP P++GG+ C G    ++ CNT  CPV+G+WG W  +S C+  CGGG +TR R C++P P  GG+ CPG       CN Q CP
Sbjct: 4545 CGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869          

HSP 4 Score: 245.358 bits (625), Expect = 7.795e-70
Identity = 130/300 (43.33%), Postives = 176/300 (58.67%), Query Frame = 1
Query:  490 GRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPSPAHGGKSCPGSHAHSQYCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSRSCN 1389
             R   GS         Q   V GG S WSA+  CS  CG G   R+R C  P PA+GGK C+G+ +E ++C+ K CPV+G+W  W  +  C   CG G Q R R CNNP+  HGG+ C G A  +  CN   CPV+G W  W  + +C++ CG G QTR R CNNP PA GG  C G+    Q CN + CP++G W  W  +S+C+  CGGG + R R C++P P +GG+ C GS   S  CN+  CP +GNW  W G+ +C++ C GG   RYR+C+NP P++GG++C G  +  + CN
Sbjct: 4511 ARNLMGSVLVRVPVIVQ---VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCN 4807          

HSP 5 Score: 210.69 bits (535), Expect = 4.297e-58
Identity = 135/296 (45.61%), Postives = 179/296 (60.47%), Query Frame = 1
Query:    4 EYQECKLKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCP 891
            E + C+ K CPVDG +S WS + EC+ +CG G  TR RTC NPS  HGG+ C+G + E   C ++ CPV+G WS+W  +G CS+ CG G QTR+R CNNP PA  G+ C G+ T  + CN   CP++G W  W+ +  CS  CGGG + R+R C++  P +GGRKC GS  QS  CN+  C   G  S WS +  CS+ C  G   R R+C NP P++GG+ C G   + + C    CPV+G+WGSW S+  C   CGGG + R R C++P P  GG+ CPG    V  CN   CP
Sbjct: 4574 EMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869          
The following BLAST results are available for this feature:
BLAST of TCONS_00006684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN12.378e-8844.51Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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