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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006676 ID=TCONS_00006676|Name=TCONS_00006676|organism=Clytia hemisphaerica|type=transcript|length=2375bpRun BLAST on NCBI transcript from alignment at sc0000069:527851..548386- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006676 ID=TCONS_00006676|Name=TCONS_00006676|organism=Clytia hemisphaerica|type=transcript|length=20536bp|location=Sequence derived from alignment at sc0000069:527851..548386- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006676 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 310.457 bits (794), Expect = 1.679e-88 Identity = 153/342 (44.74%), Postives = 209/342 (61.11%), Query Frame = 2
Query: 1232 VNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGVQTRYRSCNNPTPAHGGKSCPGSHAHSQSCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPSPAHGGKSCPGSHAHSQYCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSHAHSQSCNTHKCP 2257
V+G + +WS + CS CG G + RSR CN PA+GG+ C GS + C + C VDG S WS + +C+++CG G+ RTR+C NPS HGG+ CEG VE C ++ CPV+G W +W +G+C CG G Q R R CNNP PA GG C G ++ CN CP++G W W +S+C+ CGGG + R R C++P P +GG+ C GS S CN+ CP +GNW W G+ +C++ C GG RYR+C+NP P++GG++C G + Q CNT CPV+G+WG W +S C+ CGGG +TR R C++P P GG+ CPG CN CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 2 Score: 281.182 bits (718), Expect = 1.087e-78 Identity = 149/342 (43.57%), Postives = 208/342 (60.82%), Query Frame = 2
Query: 1061 VNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGVQTRYRSCNNPTPAHGGKSCPGSHAHSQSCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPSPAHGGKSCPGSHAHSQYCNTQKCP 2086
V+G +S W + CS CG G+Q RSR CN P PA+ G PC+GS + C CPV+G+W +WS + C++ CG G ++R+R CNN S HGGR C G++ + CN + C V G S W + CS++CG G R R C NP PA GG C+GA + + C + CP++G W +W S+ +C CGGG ++R R C++P P +GG+ C G CN+ CP +GNW W G+ +C++ C GG RYR+C+NP P++GG++C G + Q CNT CPV+G+WG W +S C+ CGGG +TR R C++P P GG+ CPG CN Q CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 3 Score: 275.789 bits (704), Expect = 6.544e-77 Identity = 149/325 (45.85%), Postives = 203/325 (62.46%), Query Frame = 2
Query: 1397 CRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCPVNGNWGKWGGFSSCNKRCGGGVQTRYRSCNNPTPAHGGKSCPGSHAHSQSCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPSPAHGGKSCPGSHAHSQYCNTQKCPVNGNWGKWGGFSSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSHAHSQSCNTHKCPVXXXXXXXXXXXXXXXKCGGGVQERFRYCNNPAPAHGG 2371
+V GG S WSA+ CS CG G R+R C P PA+GGK C+G+ +E ++C+ K CPV+G+W W + C CG G Q R R CNNP+ HGG+ C G A + CN CPV+G W W + +C++ CG G QTR R CNNP PA GG C G+ Q CN + CP++G W W +S+C+ CGGG + R R C++P P +GG+ C GS S +CN+ CP +GNW W G+ +C++ C GG RYR+C+NP P++GG++C G + Q CNT CPV+G+WGSW S+ C+ CGGG + R R C++P P GG
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGG 4850 HSP 4 Score: 257.684 bits (657), Expect = 4.975e-71 Identity = 161/362 (44.48%), Postives = 215/362 (59.39%), Query Frame = 2
Query: 494 ECVG-NTKESKQCKVKECP-VDGGLTQWTPFGQCSTSCGDGMQSRTRSCTNPPPAHNGKECDGDVEEYQECKLKECPVDGGXXXXXXXXXXXXPCGDGLMTRKRTCTNPSPAHGGKQCQGATIEEKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECP 1573
ECV N S +V V GG +QW+ + CS +CG G+Q R+R C P PA+ GK C G E + C+ K CPVDG +S WS + EC+ CG G TR RTC NPS HGG+ C+G +E C ++ CPV G +S+W + CSE+CG G TR R C NP PA GG C GA T+ + C + CP++GKW++W + CS CGGG + R+R C++P P + G C+GS S CN+ CP +GNW WSG+G CS+ C GG R R C+N P++GGR C G +Q +CNT C VDG +W ++S+CS +CG G R R C +P P GG+ C G + C V+ CP
Sbjct: 4508 ECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 5 Score: 246.899 bits (629), Expect = 1.700e-67 Identity = 150/325 (46.15%), Postives = 198/325 (60.92%), Query Frame = 2
Query: 770 CGDGLMTRKRTCTNPSPAHGGKQCQGATIEEKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTHKCP 1744
CG G+ R R C P PA+GGK CQG+ +E + C+ K CPVDG +S WS + EC+ +CG G TR RTC NPS HGG+ C+G + E C ++ CPV+G WS+W +G CS+ CG G QTR+R CNNP PA G+ C G+ T + CN CP++G W W+ + CS CGGG + R+R C++ P +GGRKC GS QS CN+ C G S WS + CS+ C G R R+C NP P++GG+ C G + + C CPV+G+WGSW S+ C CGGG + R R C++P P GG+ CPG V CN CP
Sbjct: 4545 CGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 6 Score: 243.817 bits (621), Expect = 1.870e-66 Identity = 155/351 (44.16%), Postives = 209/351 (59.54%), Query Frame = 2
Query: 191 LKECPVDGQW-GPFTKYSE---CSASCGFGNQKRSRRCDNPAPQHGGDNCLGDNIQSRACKVKECPVDGGFTNWSPFTACSRTCGDGAQERTRSCTNPLPAHGGKECVGNTKESKQCKVKECPVDGGLTQWTPFGQCSTSCGDGMQSRTRSCTNPPPAHNGKECDGDVEEYQECKLKECPVDGGXXXXXXXXXXXXPCGDGLMTRKRTCTNPSPAHGGKQCQGATIEEKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECP 1231
L PV Q G F+++S CS +CG G QKRSR C+ P P +GG C G +++ R C+ K CPVDG ++ WS + C+R+CG G Q RTR+C NP HGG+ C GN E C ++ CPV G + W P+G CS SCG G Q+R R C NPPPA G CDG + Q C + CP+ G +++W+S+S CS CG G R R C++P P +GG++C+G+ ++ C CP G +S WS + CS C G M R RTC NP P++GG+ C G ++ ++C CPV+G W SW + CS CGGG +TR R C++P P G PC G +T RCN CP
Sbjct: 4519 LVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 7 Score: 243.817 bits (621), Expect = 1.973e-66 Identity = 148/352 (42.05%), Postives = 206/352 (58.52%), Query Frame = 2
Query: 5 CNAPTLCPVDGGYTEWSMFGPCSSLCGLGTQTRSRNCTNPIPMHGGKICADGAVQVEGKSCKLKECPVDGQWGPFTKYSECSASCGFGNQKRSRRCDNPAPQHGGDNCLGDNIQSRACKVKECPVDGGFTNWSPFTACSRTCGDGAQERTRSCTNPLPAHGGKECVGNTKESKQCKVKECPVDGGLTQWTPFGQCSTSCGDGMQSRTRSCTNPPPAHNGKECDGDVEEYQECKLKECPVDGGXXXXXXXXXXXXPCGDGLMTRKRTCTNPSPAHGGKQCQGATIEEKQCKVKECPVDGGXXXXXXXXXXXXACGDGLMTRKRTCTNPSPAHGGKQCQGASTEEKQCKVKECP 1060
P + V GG+++WS + CS CG G Q RSR C P+P +GGK C +E ++C+ K CPVDG W ++ + EC+ SCG GNQ R+R C+NP+ QHGG C G+ ++ C ++ CPV G ++ W P+ CS +CG G Q R R C NP PA GG C G + + C + CP+ G W + CS SCG G + RTR C++P P + G++C+G + C CP G +S WS + CS C G M R RTC NP P++GG+ C G + ++C CPVDG + SW S+S+CS +CG G TRKR C +P P GG+ C G +T+ +C V+ CP
Sbjct: 4520 VRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGS--DLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00006676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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