|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006665 ID=TCONS_00006665|Name=TCONS_00006665|organism=Clytia hemisphaerica|type=transcript|length=1247bpRun BLAST on NCBI transcript from alignment at sc0000069:520896..533185- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006665 ID=TCONS_00006665|Name=TCONS_00006665|organism=Clytia hemisphaerica|type=transcript|length=12290bp|location=Sequence derived from alignment at sc0000069:520896..533185- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006665 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 194.512 bits (493), Expect = 3.926e-53 Identity = 124/297 (41.75%), Postives = 171/297 (57.58%), Query Frame = 1
Query: 4 EEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTQRCXXX---XXXXXXXACTLPCNGGIRFRFRNCPQ-------RYCPGSQSSVGVCNLHRCSG 864
E + C+ K CPV+G WS W + C++ CG G QTR+R+CNNP+ H G PC+G++ CN CPV+G W W +G CS+ CG GT++R+R CNN PA GG C G+ TQ CN ++C + G +TW+++S CS +CG G RTR C++P P +GG+ CEG+ V+ C CP +GNW W +G+C C GG R+R C+NP P++GG+ C G ++ CNT C W SW C+ C GG + R R C R CPG + V CN+ C G
Sbjct: 4574 EMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPG 4870 HSP 2 Score: 179.874 bits (455), Expect = 3.142e-48 Identity = 106/239 (44.35%), Postives = 141/239 (59.00%), Query Frame = 1
Query: 1 TEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTQRC 717
E C ++ CPV+G WS+W +G CS+ CG G QTR+R CNNP PA G+ C G+ T + CN CP++G W W+ + CS CGGG + R+R C++ P +GGRKC GS QS CN+ C G S WS + CS+ C G R R+C NP P++GG+ C G + + C CPV+G+WGSW S+ C CGGG + R R C++P P GG+ CPG V CN Q C
Sbjct: 4630 VEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 3 Score: 168.703 bits (426), Expect = 2.000e-44 Identity = 112/284 (39.44%), Postives = 154/284 (54.23%), Query Frame = 1
Query: 37 VNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTQRCXXXXXXXXXX---ACTLPCNGGIRFRFRNCPQ-------RYCPGSQSSVGVCNLHRC 858
V+G +S W + CS CG G+Q RSR CN P PA+ G PC+GS + C CPV+G+W +WS + C++ CG G ++R+R CNN S HGGR C G++ + CN + C V G S W + CS++CG G R R C NP PA GG C+GA + + C + CP++G W +W S+ +C CGGG ++R R C++P P +GG+ C G CN+ C W W C+ CNGG R+R C R C G S + CN C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 4 Score: 147.902 bits (372), Expect = 1.584e-37 Identity = 78/183 (42.62%), Postives = 110/183 (60.11%), Query Frame = 1
Query: 1 TEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECP 549
T+ + C + CP++GKW++W + CS CGGG + R+R C++P P + G C+GS S CN+ CP +GNW WSG+G CS+ C GG R R C+N P++GGR C G +Q +CNT C VDG +W ++S+CS +CG G R R C +P P GG+ C G + C V+ CP
Sbjct: 4687 TQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 5 Score: 90.5077 bits (223), Expect = 2.981e-19 Identity = 67/172 (38.95%), Postives = 91/172 (52.91%), Query Frame = 1
Query: 373 CRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTQRCXXXXXXXXXX---ACTLPCNGGIRFRFRNCPQ-------RYCPGSQSSVGVCNLHRC 858
+V GG S WSA+ CS CG G R+R C P PA+GGK C+G+ +E ++C+ K CPV+G+W W + C CG G Q R R CNNP+ HGG+ C G A + CN + C W +W C+ C G + R R C YC G+++ + VCN C
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697 The following BLAST results are available for this feature:
BLAST of TCONS_00006665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.