TCONS_00006665 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006665
Unique NameTCONS_00006665
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006665 ID=TCONS_00006665|Name=TCONS_00006665|organism=Clytia hemisphaerica|type=transcript|length=1247bp
ACTGAAGAAAAACAATGCAAAGTCAAAGAGTGTCCAGTCAATGGAAAATG
GAGTTCATGGGGAGGTTATGGAGGTTGCAGCAAACGATGCGGTGGAGGCT
TACAAACGAGAAGTCGTTCCTGTAATAACCCAGCTCCCGCACACAGTGGT
AATCCATGCAAAGGAAGCTCAACTTCATCCAAGAGATGTAATACTCATGA
ATGTCCAGTGAATGGTAATTGGGGTAAATGGTCAGGATTCGGTGTCTGTA
GTAAGAAATGTGGAGGAGGAACGAAATCTCGTTCAAGAAGATGTAACAAC
TCTTCACCAGCTCATGGTGGACGTAAATGCTCAGGATCTTCAACTCAATC
TGCTCAATGCAATACCCAACACTGTCGTGTTGACGGAGGGTTAAGTACGT
GGTCAGCTTTCTCTAAATGTTCGAAAGCTTGTGGTGCTGGTCACACTCAC
CGTACACGATCCTGCACCAATCCCTCACCTGCACATGGTGGTAAAGGATG
TGAAGGCGCATTGGTTGAAAAGAAAAGTTGTAAAGTCAAAGAATGCCCAG
TCAATGGCAATTGGGGATCATGGGGTTCATATGGATCATGTGACAATAAA
TGTGGTGGAGGTGTTCAAGAACGATTCCGATATTGTAATAATCCCGCCCC
CGCCCATGGTGGTAAAGGATGTCCTGGATACGCCAAAATGGTCAGAGCTT
GCAATACTCAAAGATGTTCAGGTTGGTCAGGTTGGGGATCATGGGGTGCA
TGTACTTTACCGTGCAATGGTGGTATCCGTTTCCGGTTCcgaaactgtcc
gcaaagataCTGTCCCGGATCGCAATCGTCGGTTGGAGTTTGCAACCTTC
ACCGATGTAGCGGTAAATAATATGAagaatgaaaaatggaaaaactaTTG
ATGATTGactaaattttgaaatcatATGAAATCGTTCAAGATCTTTGTTG
AAATGATGCATCGATTTTAAGAATTGTAAgctttattaaaaaatattatt
taagcTTTCTCTACTCTTAGATACCGAATGAGATAATTTTGAGCTTTTTC
CCTAATTCGGACACATTTTTTCTAACTACGGACTGCATAATAAGCGGGGC
TTTTTTgtacgaatttttttcaaaagactcCAGCAGCCTCCTGGCTTTTT
CAGATCAGAGTTGTAAATTATCTTCTTCTAAGTACAAGCCATGCCAACGc
aagtttatttacaaaattatatattttttgcatattttatttatttt
Run BLAST on NCBI

transcript from alignment at sc0000069:520896..533185-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006665 ID=TCONS_00006665|Name=TCONS_00006665|organism=Clytia hemisphaerica|type=transcript|length=12290bp|location=Sequence derived from alignment at sc0000069:520896..533185- (Clytia hemisphaerica)
ACTGAAGAAAAACAATGCAAAGTCAAAGAGTGTCCAGGTAGAGTGAGATC TGTTAGAAACTTATTCGACTATGTTTTCGTGACTTCGTTTTAGCTATATA ATGACTCAATCTTTTCAATCATCTCCCAAAACTGATGAATTTGCACCCAT AACTGCTACACTGTAAATCAGAATTCAAAGTGGAAAAGTAGCTTATTTTC CTTTGTTCATTGAGTGTTATGAAAATCAACATAAATTACTAAATTTAAGT TGATGAAATTACACGCTACACGAGGTTTAAAATGTTGCATTCGACATCAC TTGTATCAAAGTTTCAAAACAATTTGCTTGTAGATTTTCATTTAACATCA ATTCTTTTTTTTCGACGATAGTCAATGGAAAATGGAGTTCATGGGGAGGT TATGGAGGTTGCAGCAAACGATGCGGTGGAGGCTTACAAACGAGAAGTCG TTCCTGTAATAACCCAGCTCCCGCACACAGTGGTAATCCATGCAAAGGAA GCTCAACTTCATCCAAGAGATGTAATACTCATGAATGTCCAGGTACCATT TGTATGATTATCTTGCAACTATTATTGGACTATTTGTTCAGACATTGTTT ATTCGGGCTGCATGAAATACATTGATAAAGAGAGTTTCGGGATTGAAAAT TATGCCAAGAAATAGTGAATTTGTCCATCTAAAATTCGATGCCATCCTTA TGTTTATATTGTCTATACATCTACTTTGAACTGAATTTCATTCGCTAACA AAAATGCAATAATTTTTCACCTTAACCGTCAAGTTGAAAAATTATTGAAA AATTATTGAAAAATTACTTCATTTTAATGTGATATTTCACTTTTAATCTT CTTTCCGTCTCAGTGAATGGTAATTGGGGTAAATGGTCAGGATTCGGTGT CTGTAGTAAGAAATGTGGAGGAGGAACGAAATCTCGTTCAAGAAGATGTA ACAACTCTTCACCAGCTCATGGTGGACGTAAATGCTCAGGATCTTCAACT CAATCTGCTCAATGCAATACCCAACACTGTCGTGGTATGAATTCACTACA TTATTGGAATAATTTTTGCGGAAATTAATTTTAGTGCTTTCGGAACCATG AAATGCAATTTTTTCCCAATTTTATCGAAAAATGAAAGAAATTTGTCCAC AAAAGGGCAAAATCGAGACAATTAAAACCCGCGAAATGCAATTTTTCTGA TTTATTTTTTCGACCGTGAATAATTTTTCCCATGAATGATTCTCATGTAA AATTTAAAATAAAAAAATGAAGGAAATTACGTCAAAAAAAGATGCTGATT CGTGAAAATTCTTTCCCTGCGGTTTTTTTATTTTATGTGTTCGCGAAAAC AAATCCCGCAAAAATTATTTCGTTTAAATGTCTGTTCGCGAAAATTAGTC AGTCCACTTAAAGGATCGCTTTTTGGATTTTAAAACCGTTAAACATTGCT CGTTTTCGTGATTCAGATTTTCTTAATTCTTCATTTAGTTGACGGAGGGT TAAGTACGTGGTCAGCTTTCTCTAAATGTTCGAAAGCTTGTGGTGCTGGT CACACTCACCGTACACGATCCTGCACCAATCCCTCACCTGCACATGGTGG TAAAGGATGTGAAGGCGCATTGGTTGAAAAGAAAAGTTGTAAAGTCAAAG AATGCCCAGGTATCAAAAGTTTACTCTTAGTGCTCTTGGAAAAGTTTTTA GTTTTGAAATTATTTGTGCTGGATTAATCCAGAAGCGTTGACAAGGGGGT GTTGGGGAGCAGATTCTTTTTATTTGAATAGATAATTACCGTGTCATAGA AACCTGCTCCCCTACGCAAATTGTGCGTCCCGCTTGTCTACTGAAGCTAC TGTACAGATTACAGTCAATATTAAATTGGTCAAAATTTACTCAGCTTTCT GCTCAGCCACGATAAACTTCCAATATGAACAATATTTACGGTTTAAGTAG ACCGGTATAATCTACGTAATAAAAATAAAGAGCTTGAGTTTAGCTGTTAC GTACCCACTAGCTTTGAGTACTTCTATCTGTTAACTTAACTACACCATTC TGTTTCATGTCTTAGACAATATCCTAAGAGATAAGACTTTGAATAAGCGA ATAACATGATTCTACTTCACAGTCGATCTAAATATCTTATCATTTGTATT TCCCCTTTCTCTTACCCATAGTCAATGGCAATTGGGGATCATGGGGTTCA TATGGATCATGTGACAATAAATGTGGTGGAGGTGTTCAAGAACGATTCCG ATATTGTAATAATCCCGCCCCCGCCCATGGTGGTAAAGGATGTCCTGGAT ACGCCAAAATGGTCAGAGCTTGCAATACTCATAAATGCCCAGGTAAGGTA TCTATTTTGAACTTTACCGCAGAAACCTTTTAAACTATCCATAATGCATT CAAACCAGTCAAAACGTTTATATCATCTTCAGTTACCAGTTAACAACTTT TATTTATATCATAGTCAATGGTAATTGGGGCAAATGGGGAGGCTTCAGTT CTTGCAACAAACGATGTGGAGGAGGGGTACAAACAAGATACAGATCATGC AATAACCCAACACCTGCACATGGTGGAAAATCATGTCCTGGTTCTCACGC TCACTCACAATCGTGCAATACTCAAAAATGTCCAGGTACTTACTTTTCAA GATTCAAATTATCAAATCATGAAGTCAATCCCTAACTTATCTACATATTT AACGTCCGTCTCAAAAGTACATGTGGACCCTTTATTTTGTAACATTTTTT CAGCATACGTTCATGCTGTGGTAGAATGTTATATACCGCTGTAAAGATAT TTTTCGCCACAGCCCTCTGAAGTTTTTGTCTATTTGTGGTCATTTTCAGC CGTTTCAGCCCTACTTCACAGGGCTTTATTAACTTATTATCAACAAAAAT AAGAGCAGCAGATTTAACTTTTCAACCAGAAAATAAAATTTTCATCTTCA ACTTTTCAAAAATCTCTAATCTAATATAGGTTAATAGGTTATTCTCCTGA AAATATCTTTCCAACTCTGTATAACTTTTTATCATAGCATAAATGGGTGC TGGCAAATTGTTACAAGGTTTAATGTCCACGTATACTTTTGAAACCAATC TTGGTAACAGAAAAATCCTTTTTGTTTGCACAAACCAGGGCTCAGCGAAA TAAGTTTCCCTTTTTACTGATGGCATCAATTATTTCCATTAAGTTCAACG TTGAGAGTTCTTCAATTTTTAGCCCCCTCCCCAACTCCTCCTTTCTACAG GAACACGGACACACTGACTTTTTTCAGCTTTTTTTTCAAAAATATTATTT ATCTTTTAGTCAATGGCAATTGGGGCAAATGGGGAGGTTTCAGTTCTTGC AACAAACGATGTGGAGGAGGTCTACAAACAAGATACAGATCATGTAATAA CCCATCACCTGCACATGGTGGAAAGTCATGTCCTGGTTCTCACGCTCACT CACAATACTGTAACACTCAAAAATGCCCAGGTATATGATGTAACGTTAAT CGATCAATGAAAAAATTGTGATAATTAGCTGTTAAAGTGCTCTAGATTTG TAATTTCACATCTGAGAATGATAATTAGCTTTCAATCTGAGCTTGGAAGT TTCCTTTTAGCTTATTAACCGACCATTAAAAGAATCTACATACCAACGAC ATTACTCATGTGTGATATGCTACAACGTTTCTAAAAGAGGTGATGTGTTA ACTCCAAAGTCATTACTAGAGAAAGTTTAACCTGAACTTTGTTTTTTTTA TTTAGTCAACGGCAATTGGGGCAAATGGGGAGGCTTCAGTTCTTGCAACA AACGATGTGGAGGAGGTTTACAAACAAGATACAGATCATGTAATAACCCA ACACCTGCTCATGGTGGAAAATCATGCCCTGGTTCTCCCGCTCACTCACG ATCTTGTAACACTCAAAAATGCCCAGGTAATTTTTAAGCCATAATATTAT CATCAATCGATAATTTCAAATTAACCATTATCGACGTTTGTTTGGTCATT TAGTTAGTTTACAGTTACTTCATAATGGCACTGACTGAATTCTTCATGGT TGTCCATGTTTAAAAATTAAATCTGAAGCTAAGAGTATAATTATTAAGTC GTGGATAATGTACTGACAATCGATAAACTTAATTGGTCAGAGAAGGTGGC AAACAAGTATAATTACTGCGAACTAATCATTAAGCTGCTAAGTTTGATTT TTGTTTGTTTCATGCTTTTGGACCCAATATATGGAGTTTAAAAAGTTTAT TTGTCATATTTTAGTCAACGGTAATTGGGGCAAATGGGGAGGCTTCAGTT CTTGCAACAAACGATGTGGAGGAGGTCTACAAACGAGATACAGATCATGC AATAACCCAACACCTGCACATGGTGGAAAATCATGCCCTGGTTCTCCCGC TCACTCACGATCTTGTAACACTAAAAAATGTCCAGGTAATTTTTAAGCCA TAATATTATCATCAATCGATAATTTCAAATTAACCATTATCGACGTTTGT TTGGTCATTTAGTTAGTTTACAGTTACTTCATAATGGCACTGACTGAATT CTTCATGGTTGTCCATGTTTAAAAATTAAATCTGAAGCTAAGAGTATAAT TATTAAGTCGTGGATAATGTACTGACAATCGATAAACTTAATTGGTCAGA GAAGGTGGCAAACAAGTATAATTACTGCGAACTAATCATTAAGCTGCTAA GTTTGATTTTTGTTTGTTTCATGCTTTTGGACCCAATATATGGAGTTTAA AAAGTTTATTTGTCATATTTTAGTCAACGGTAATTGGGGCAAATGGGGAG GCTTCAGTTCTTGCAACAAACGATGTGGAGGAGGTCTACAAACGAGATAC AGATCATGCAATAACCCAACACCTGCACATGGTGGAAAATCATGCCCTGG TTCTCACGCTCACTCGCAGTCTTGCAACACTCATAAATGCCCAGGTATCA AAGATAATATCAATCATCCAATTAAAATTAAAATTGTATCGACTAGACCA TTGATTGTAGACATGCTTCTGAAAATTTGTCTGTGTTTTGGTATGGCTAT TTCAAAACAAAATCAGATATTTTCTGCAAATTAGATTAAAAAGTTTTCAC CTTTCTCCATAAGTTTGTGAAGTCTAAGGTAACAAAAACATGATATGAAT GGCCTAGTATAAATTTTTACCATTTAAAGTGAACTCTAGAAGTACTACTT CCGTTTTCTTTCCCACAGTTAATGGTAATTGGGGATCATGGGGTTCATAT GGATCATGTAACAATAAATGTGGTGGAGGTGTTCAAGAACGATTCCGTTA TTGTAATAATCCCGCCCCCGCCCATGGTGGTAANNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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GAAACTTTTTTATGAGGATTTGACTAGGAAACGTCCGGGGAAAATGAAAT TGTCCGCTAATCAAAGGTGTCCGCCTTTCAGAGTGTCCGTTAATTGGAGG TTTTACTGTACTCCTTTTCCTTCATATCTCTCCACTCCACCTAGATCAAT TACTTTATTTTCAGTGCATGGAAGTTTTTTACCTTATAAGAAGAAATTTT GGCGAGAAGGCAATTTGGCGGAATTTATTTTGGCGATTTAATAAAATTTC TAAATTTGGCGAGAATTAATTTTGGCGAACGACGTATTTTTGTTTAATAT TTTAGCTGAAAAGAGAGGAAAAAAGGGTTTTTAGGAGAAATAGAGACTAA ATTGAAAGAAAATTAAATTTGGCGAGAATTTTTTTTGGCGAATGACCTAC AAATTTAAATTTCATTCCACCAAAATTTCTTCCCTTAAGGTAATTTTTAG AAGCATCCAGTGGAAAGCCTTATTAGAAAATCTTACTAAAATTATTTTTA TTTTTAAAATCTATTTCATTCATATTAGTGAGAGGAAACTGGGCCAGATG GGCTACCTGGGGATCATGTTCAAAAGCATGCGGAAATGGTGAAAGAAGGC GTTACAGGGCGTGCAACAACCCCGCCCCTGCTTACGGAGGCCCGACTTGT CCAGGAAGCAATGTTCATGTACAACGATGCAATACTCATGGATGTAGAGG TATCTAAAATGTTCAGTGGAGTCTCTATAACTCGAACCCGTACGGGAAAC ACAAATTTGTTCGAGTTAAGGAAATTTCGAGTTATAAAGTAAGGTTTATA AGGCATTCTGTTAACTAAAGGGTGAGAAAACTTTGAGTTCGAGTTAGCCT AAGGAGACATTCGAGTTATAGAGATTCGAGTTAAAGAGACTGCTGTATTA TAAAAATCAAATTTATGAACATATAAGCTATGTGTAAAATTTACATTTGC GTAACAAATCCTTGCTTCTTTAATTATGGAATGATGTATCATGTTTCCAG TCACGTTCTTTACAATTTTCTCANAATACACAAAGATGTTCAGGTACTTT TCGATTTTCATCATTTTCGATGATAAAGACTATATTCTCTTCCAAGATCT TTCCAAATTTTGAATAAGATCTTTGCGAGACAGTACACTTATCAACCCAA CGTCACAGAAACAGAAATTTTCACCCAAAACGCTAAAAGCTCTTAAGCTC GGGAAAATTTCCAACATCTGGAAGGTTTAGATTATGAAATTTTGCAAGGC CACGCCATGTTTTGTAGCGGGAGGCTTGGTCCCCAGCCCTCGTTATTATA ATAAAAATATATTGAGAATTTTGTGTAATTCCTCGTTTGTAGCAATTCAA TGTTCGGGGGAAAAAGTCGCTTTTGGGCTAATTGTTAAATCTAATCGAAT ATTTCAATTCGGGAGGGGTTTATAGACTTCCAGGCTATATTCTGAGCCAT ATTGAACCATTCTTGAACTTTTGGATCCTCAGTCTTAAGTCTAGCCAGAT GCCAGATGACGAGTTTCTAAGTCATCGGCATACTTTTTACATTTCCGGAT GACCAGTTATTAAGTCATCGGCACTTAAAAGTTTAAAACGTAAGGAGAGT GTGAGCTCACTTTTACTAGGAGGTCATAATGTCTGCAGTCATTGCATTGA CATTCTCATTAAACAAAGAGTTTTGACGCCAATTCTTTGTAAATTCATAA CTAGTTGAAAGATACTAGGTGTGTTTTTAAGATTTAAGAGCTTTTCATTA TTATCTCATTATTGCAGAACTTGAATCTTCAATTGGACACCTAATCGAAG GAAAGCTCGTTGCCTACACACATTACCCCAATTACTTCTCCTCGCCTTGA ATTTATCATTTAACCATCAAAGAATACATGATATGCACCACTGCAATGTC TTCCATTCCACCCATAAGCTCATGGGTTGTAAGTGACGTAAAATCAGTCA ATACGTCACTTTAACCAATTAGCTATTGGGTGGAATGGAAGACATTGCAA TGGTGCATATCATGAATAGACCTTTTCATAAATTACGTCACGAACATCAC TTGCTTCGTATCCAAACAACTACCATGGTGATTATGTCCCTTCAGACATT AAATGATTTTTTTATGAATAGAAGCAGTTTTAATAAAATCTGCTGGGAGT TAATCACCATGGCAATAATTTCGAAATGAGGCAAGTGATGTTCGTGACGT AATTTATGAAAAGGTCTCTTCATTTCAAAATCAGCAAAATCAAACCTATA ATTTTCATTCACAGGTTGGTCAGGTTGGGGATCATGGGGTGCATGTACTT TACCGTGCAATGGTGGTATCCGTTTCCGGTTCCGAAACTGTCCGCAAAGA TACTGTCCCGGATCGCAATCGTCGGTTGGAGTTTGCAACCTTCACCGATG TAGCGGTAAATAATATGAAGAATGAAAAATGGAAAAACTATTGATGATTG ACTAAATTTTGAAATCATATGAAATCGTTCAAGATCTTTGTTGAAATGAT GCATCGATTTTAAGAATTGTAAGCTTTATTAAAAAATATTATTTAAGCTT TCTCTACTCTTAGATACCGAATGAGATAATTTTGAGCTTTTTCCCTAATT CGGACACATTTTTTCTAACTACGGACTGCATAATAAGCGGGGCTTTTTTG TACGAATTTTTTTCAAAAGACTCCAGCAGCCTCCTGGCTTTTTCAGATCA GAGTTGTAAATTATCTTCTTCTAAGTACAAGCCATGCCAACGCAAGTTTA TTTACAAAATTATATATTTTTTGCATATTTTATTTATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003741XLOC_003741Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006665-exon-sc0000069-1575043694:533149..533185TCONS_00006665-exon-sc0000069-1575043694:533149..533185Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1575043694:532644..532814TCONS_00006665-exon-sc0000069-1575043694:532644..532814Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1575043694:532152..532322TCONS_00006665-exon-sc0000069-1575043694:532152..532322Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1575043694:531527..531697TCONS_00006665-exon-sc0000069-1575043694:531527..531697Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1575043694:530856..531014TCONS_00006665-exon-sc0000069-1575043694:530856..531014Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1575043694:522643..522654TCONS_00006665-exon-sc0000069-1575043694:522643..522654Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1575043694:520896..521421TCONS_00006665-exon-sc0000069-1575043694:520896..521421Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1510915933:533149..533185TCONS_00006665-exon-sc0000069-1510915933:533149..533185Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1510915933:532644..532814TCONS_00006665-exon-sc0000069-1510915933:532644..532814Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1510915933:532152..532322TCONS_00006665-exon-sc0000069-1510915933:532152..532322Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1510915933:531527..531697TCONS_00006665-exon-sc0000069-1510915933:531527..531697Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1510915933:530856..531014TCONS_00006665-exon-sc0000069-1510915933:530856..531014Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1510915933:522643..522654TCONS_00006665-exon-sc0000069-1510915933:522643..522654Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1510915933:520896..521421TCONS_00006665-exon-sc0000069-1510915933:520896..521421Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1491911889:533149..533185TCONS_00006665-exon-sc0000069-1491911889:533149..533185Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1491911889:532644..532814TCONS_00006665-exon-sc0000069-1491911889:532644..532814Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1491911889:532152..532322TCONS_00006665-exon-sc0000069-1491911889:532152..532322Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1491911889:531527..531697TCONS_00006665-exon-sc0000069-1491911889:531527..531697Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1491911889:530856..531014TCONS_00006665-exon-sc0000069-1491911889:530856..531014Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1491911889:522643..522654TCONS_00006665-exon-sc0000069-1491911889:522643..522654Clytia hemisphaericaexon
TCONS_00006665-exon-sc0000069-1491911889:520896..521421TCONS_00006665-exon-sc0000069-1491911889:520896..521421Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:520896..533185 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.261431 0.0643387 0.15822 0.0378611 0.210042 0.230835 0.548711 0.555928 0.250217 0.580997 0.548795 0.298553 0.674853 0 0.364109 0.497821 0 0 1.31697e-08 0 2.08574 2.49169 3.05618 1.17023 2.86814 0.24734 0.185654 0.145417 0.551163 0.425158
Blast
BLAST of TCONS_00006665 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 3.926e-53
Identity = 124/297 (41.75%), Postives = 171/297 (57.58%), Query Frame = 1
Query:    4 EEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTQRCXXX---XXXXXXXACTLPCNGGIRFRFRNCPQ-------RYCPGSQSSVGVCNLHRCSG 864
            E + C+ K CPV+G WS W  +  C++ CG G QTR+R+CNNP+  H G PC+G++     CN   CPV+G W  W  +G CS+ CG GT++R+R CNN  PA GG  C G+ TQ   CN ++C + G  +TW+++S CS +CG G   RTR C++P P +GG+ CEG+ V+   C    CP +GNW  W  +G+C   C GG   R+R C+NP P++GG+ C G    ++ CNT  C        W SW  C+  C GG + R R C         R CPG  + V  CN+  C G
Sbjct: 4574 EMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPG 4870          

HSP 2 Score: 179.874 bits (455), Expect = 3.142e-48
Identity = 106/239 (44.35%), Postives = 141/239 (59.00%), Query Frame = 1
Query:    1 TEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTQRC 717
             E   C ++ CPV+G WS+W  +G CS+ CG G QTR+R CNNP PA  G+ C G+ T  + CN   CP++G W  W+ +  CS  CGGG + R+R C++  P +GGRKC GS  QS  CN+  C   G  S WS +  CS+ C  G   R R+C NP P++GG+ C G   + + C    CPV+G+WGSW S+  C   CGGG + R R C++P P  GG+ CPG    V  CN Q C
Sbjct: 4630 VEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868          

HSP 3 Score: 168.703 bits (426), Expect = 2.000e-44
Identity = 112/284 (39.44%), Postives = 154/284 (54.23%), Query Frame = 1
Query:   37 VNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTQRCXXXXXXXXXX---ACTLPCNGGIRFRFRNCPQ-------RYCPGSQSSVGVCNLHRC 858
            V+G +S W  +  CS  CG G+Q RSR CN P PA+ G PC+GS    + C    CPV+G+W +WS +  C++ CG G ++R+R CNN S  HGGR C G++ +   CN + C V G  S W  +  CS++CG G   R R C NP PA GG  C+GA  + + C  + CP++G W +W S+ +C   CGGG ++R R C++P P +GG+ C G       CN+  C     W  W     C+  CNGG   R+R C         R C G  S +  CN   C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811          

HSP 4 Score: 147.902 bits (372), Expect = 1.584e-37
Identity = 78/183 (42.62%), Postives = 110/183 (60.11%), Query Frame = 1
Query:    1 TEEKQCKVKECPVNGKWSSWXXXXXXXXXXXXXLQTRSRSCNNPAPAHSGNPCKGSSTSSKRCNTHECPVNGNWGKWSGFGVCSKKCGGGTKSRSRRCNNSSPAHGGRKCSGSSTQSAQCNTQHCRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECP 549
            T+ + C  + CP++GKW++W  +  CS  CGGG + R+R C++P P + G  C+GS   S  CN+  CP +GNW  WSG+G CS+ C GG   R R C+N  P++GGR C G  +Q  +CNT  C VDG   +W ++S+CS +CG G   R R C +P P  GG+ C G   +   C V+ CP
Sbjct: 4687 TQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869          

HSP 5 Score: 90.5077 bits (223), Expect = 2.981e-19
Identity = 67/172 (38.95%), Postives = 91/172 (52.91%), Query Frame = 1
Query:  373 CRVDGGLSTWSAFSKCSKACGAGHTHRTRSCTNPSPAHGGKGCEGALVEKKSCKVKECPVXXXXXXXXXXXXCDNKCGGGVQERFRYCNNPAPAHGGKGCPGYAKMVRACNTQRCXXXXXXXXXX---ACTLPCNGGIRFRFRNCPQ-------RYCPGSQSSVGVCNLHRC 858
             +V GG S WSA+  CS  CG G   R+R C  P PA+GGK C+G+ +E ++C+ K CPV+G+W  W  +  C   CG G Q R R CNNP+  HGG+ C G A  +  CN + C     W +W     C+  C  G + R R C          YC G+++ + VCN   C
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC 4697          
The following BLAST results are available for this feature:
BLAST of TCONS_00006665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN13.926e-5341.75Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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