TCONS_00006664 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006664
Unique NameTCONS_00006664
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006664 ID=TCONS_00006664|Name=TCONS_00006664|organism=Clytia hemisphaerica|type=transcript|length=478bp
GAGTATAACGCGTATAAACTCCATATCAGTGGTTTCTCTGGAAATATTGG
ACAAGATAAGATGAATTATCATAATGGAATGAAATGGAGCACACGTGACC
GAGATAATGATCTAAGACCAGCTCATGATTGTGCTTATGATCAGAGAGGT
GCTTGGTGGTATAACGGTTGTGAGACAAGCAATCTGAATGGAATTTATGA
CTCCttcaataaagagaaaaatccCGATGAAGCGTTTGGTTGGAATCCCT
TCCGTTTGGAATTCTCTGAAATGAAAGTTCGACGGAAGTAATTGCCCGTG
TGGTGCTATCCTTGATAAAGACATTGACTACATTTCTACGTTTCCCTCTA
AAAAGGGTACTAATTTTCTTGAGAGTAATTTTTATGTTATGAAATCAGCC
TTTCGGGTATTTTAGAAACCAGGAAAATAAAATAGCGGAGAAAAATAAta
tattgaattgaattttattGAACTGCGG
Run BLAST on NCBI

transcript from alignment at sc0000069:510914..516643-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006664 ID=TCONS_00006664|Name=TCONS_00006664|organism=Clytia hemisphaerica|type=transcript|length=5730bp|location=Sequence derived from alignment at sc0000069:510914..516643- (Clytia hemisphaerica)
GAGTATAACGCGTATAAACTCCATATCAGTGGTTTCTCTGGAAATATTGG ACAAGATAAGATGAATTATCATAATGGAATGAAATGGAGCACACGTGACC GAGATAATGATCTAAGACCAGGTTCGGAAATAATTTTTATTTCAGATAGG TACCCGACCAGCTGCCAGTTGGGTCTATTACGAAATTCTACAGTAGACTC TTCGCCTATTCGAATCTTTGTATTATTCGAACTGACTCTTATCCCCCCTC AAGGAAAAACCCTCTCGATGTACTTTCTATAATTTGAATTTCTCTGTAAT TCGAACATCTAAGATTCCCCGTTGGAGTTCGAATTAGCGAAAGTCATCTG TATGTCAGACGGTCGGACGGAAAGATAGGCTTTAGCGATTAAAACGTGTC TTCTTTAAGTGGTGTCAGACCCGTTCTTTGTCTACTACAATGATTGTCAA ATCTAACTTTTGTGGTCTAAAGAGAAATCATGGAAAACATTAGTGTTACA TTCATGGTCAAAACCTAATCTTTACGAAGATTTCAAAATTCATTGCTGTA TTTCACTTCACTATACATGAGATAAACTCTTGTACAGAGATTTGAATGTC TTTTTTTCCTGTTGCAGTTGAATTCTCTATAACTCACACACACACACAAA GTAGTTAAGGAAATTTTGAGTTATCAAGATTGGTTTATGAGGCATTGTCA AGAAGAAAAGAAGACTTGTTTGAGTTAAGAAGTGTATAGAGGTTTGAGTT ATGGAGACTTCACTGTAATTTATCTCGGAGAATTATTTAGTTTGTAGGTT AAGTATTTACAGTTTTGAGTTATATCTTTAAAAATAGAATGAACCCGTTA ATGCCACTTGCATCATAAAGAAATCGCTCAGGGATTACAGTTTTGAGTCT TGACTTTNTACATCTGTCTAAACTTAAAAAGTCTAAGAGTTCTACTTAAT TAGTATCAACTTATTCTTTTACTTTTTATACCCCCTGGAATTGATCATTT TGGATATTGAACAGGCTTTAAAGATTCAAAAAGTGAAGCTTTATCGTAAA GAATCTATCCAAAATTATATAGAGCAAAACATTGAAATAAAATACACTGA AATGCCTGAAGATTGTGCCAGCATGAAACACCGTGTAGTAATTGTAAGTT AGTTCTTTATTCCTTGAAATTTCGCTTGAATTTTTTTCGAATTTTTTTGA GTACTTTGTGATTCTATTTATTTCAATATATAAAGAAAAACAGAATCAGG GGGTACTTTTGCTCTGCCCATCTTGCACAAAACACCAAAATGATGTCTAT CTGAGAGTCGTAACGTCCATAGAGCGTTAGATTAACATTAAAACAACGTC GTCATAAAGATAGGTCGATACTCGTTGGAATTCAGTAGATATATAGATAG GGAATTGCTAAAGGATCAATTCATTCTGCTAGTATAAAGGTCAAAGCTAA GATGAAGTTTTTGATCCTACTTTTCTTGGTGACTGTTCTACCATCGAATG TATCGACCACATGTAACGATTTTACTTTGAAACTTAATCTGTTGAAACAA CATGTTGAAATGGTGACTAATTTGTTGACTTTGACCAATCAACGTTTGAC AGATATCACTCAACAACTCAAACAAAACCTCACTAAGTCAAATGAAATAT TGAATGAGAAACTAACCAAAACGAATGAAGAGCTTTACCAGAAAATAATA CGCAATACACAAACAATCACAGAACAAATCACGAAAGATAATGAAGAACT AGAACACAAAATCATTGAGAAATTGACCAAGAAAGACCAAAGTTTAACTC AAAAGGTATCACAAATGACTGAAGACGTTCAATCATTAACGCAAAAAGAT AAAACCCAGAACAGTTTTTGCCAAAGTAATTCCCATAGATGTGGCTCTTG TTATTGTATCGAAGATTTGCGGATTCCTGATAAGCATTATTGCGATTGTC GTATGAAACCCATTCGTCGTGATTGTAAAGAACATCATTTGCAAGGAGAA AGGATCAATGGTTTATACCGAATCAACCATGACACTGATGGGAATGATGT CTCTGTCTATTGTGATCAAACGACTGATGGAGGTATGTAGAATATTTAGA CAATTCTTCTATTACCTTCGTTTTCTCCTTGATTTGAGCCTTATAAGCGT TATGTTCCTTTTCCTGAGTCCTTGCACAGTTCTCCTTTTTAATTTTTTTT ACTCAGGATACCGTCTAGAGCATTGAGTTTAATGCCCGAAGGGCTAGAGT AGAATCTCTAACCTTTCCCAGGAAAGAAAAAATGAAGCCTCTTATTTCCC ATTCAGAACGCGTCGCAATGATGAAAACAGAGTGTGTCTAGTGATTCCTT TGTTTTTGAGGACTGCATTTTTTAAATCTAGCGATATATTTTACTTTCAA TTCGGCGTTTGTGTAAAAACCACGCGCATGGTTGTATTTCCCATTTAGAA GTTTCGAGTCAAGCCCTTGGACTTGGAAGTCAATGGTCTAGAGTCCTTCC TCTGTTAGTTACTAACCCTATACATTACACGTTTTTTATAAGAACATGGA AACATTTTTGAAGCCTTCGGATGTCCTTAACTTTTTGAGTTTTAAAGCTT AAAAATGTTCTTAAAATGTTCTTATTTTCACCATTTTTACCCATTTTTCC TAAGAATCGGGTGGTTTCGAGTCTGCAAAGCCTTGAAATGTTCTTAACTT GTTTTTAACATTTTGGCCATCGAAGCTTTATGTTCTTATATAGTTTGTTC TTATATATGAAACAGAAAAAACAAAAACAGTTTGCTCTTATAAAAAACAT GCAAGGGAAATATTTAGTGAGCAGCGAAAACCTTAGAAAGCTTGTCTTTT TTTATAGGTGGCTGGACAGTAATTCAAAGACGTGTTGACGGCACCACCAA CTTCTTCCGTAATTGGCAAACCTACAAACAAGGGTTCGGTCAACTCCACT ATGAACACTGGCTAGGGAACGATAACATACATCTTCTCACCAGACCACGA GACAGTTACTCAGAAATACGATTTGATCTGCAAAGAAAAGATTATGGTCG TAGGCAGTATGCAAAGTATTCATTGTTCAGGATTGATAATGAGTTGAACG CGTATAAACTTNACAGTTTTTGCCAAAGTAATTCCCATAGATGTGGCTCT TGTTATTGTATCGAAGATTTGCGGATTCCTGATAAGCATTATTGCGATTG TCGTATGAAACCCATTCGTCGTGATTGTAAAGAACATCATTTGCAAGGAG AAAGGATCAATGGTTTATACCGAATCAACCATGACACTGATGGGAATGAT GTCTCTGTCTATTGTGATCAAACGACTGATGGAGGTATGTAGAATATTTA GACAATTCTTCTATTACCTTCGTTTTCTCCTTGATTTGAGCCTTATAAGC GTTATGTTCCTTTTCCTGAGTCCTTGCACAGTTCTCCTTTTTAATTTTTT TTACTCAGGATACCGTCTAGAGCATTGAGTTTAATGCCCGAAGGGCTAGA GTAGAATCTCTAACCTTTCCCAGGAAAGAAAAAATGAAGCCTCTTATTTC CCATTCAGAACGCGTCGCAATGATGAAAACAGAGTGTGTCTAGTGATTCC TTTGTTTTTGAGGACTGCATTTTTTAAATCTAGCAATATATTTTACTTTC AATTCGGCGTTTGTGTAAAAACCACGCGCATGGTTGTATTTCCCATTTAG AAGTTTCGAGTCAAGCCCTTAGACTTGGAAGTCAATGGTCTAGAGTCCTT CCTCTGTTAGTTACTAACCCTATACATTACACGTTTTTTATAAGAACATT TTGGAAGCCTTCGGATGTCCTTAACTTTTTGGTTTTTAAGTCTAAAAATG TTCTTTAAAAGGTGCTTATTTTCACCATTTTTACCCATTTTTCCTTAGAA ATCGAATGTTTGAGAAAAAAAAATGAATCTTAACTTGTTCTTGATATTTT GGCCATCGAAGCCTAATGTTCTTTTATAGTTCGTTCTTATAAAAATACAT ATAAGGGAACAAATTTTGGTGATTAAAAAAAACCCTAAGAAACTCTGTCT TCTTTATAGGTGGCTGGACAGTAATTCAAAGACGTGTTGACGGAACAACC AACTTTTTTCGTAATTGGCAAACCTACAAACAAGGATTCGGTCAACTCCA CTATGAACACTGGCTTGGGAACGATAACATATATCTTCTCACCAGACCAC GAGAAAGTCACTCTGAAATACTATTTGATCTGCAAAGAAAAGATTATGGT CGCAGGCAATATGCAAAGTATTCACTTTTCAGGATTGATAACGAGTATAA CGCGTATAAACTCCATATCAGTGGTTTCTCTGGAAATATTGGACAAGATA AGATGAATTATCATAATGGAATGAAATGGAGCACACGTGACCGAGATAAT GATCTAAGACCAGGTTCGGAAATAATTTTTATTTCAGATAGGTACCCGAC CAGCTGCCAGTTGGGTCTATTACGAAATTCTACAGTAGACTCTTCGCCTA TTCGAATCTTTGTATTATTCGAACTGACTCTTATCCCCCCTCAAGGAAAA ACCCTCTCGATGTACTTTCTATAATTTGAATTTCTCTGTAATTCGAACAT CTAAGATTCCCCGTTGGAGTTCGAATTAGCGAAAGTCATCTGTATGTCAG ACGGTCGGACGGAAAGATTAAAACGTGTCTTCTTTAAGTGGTGTCAGACC CGTTCTTTGTCAACTACAATGATTGACAAATCTAACTACTTTTGTGGTCT AAAGAGAAATCATGGAAAGCATAAGTGTTACATTCATGGTCAAAACTCAT GAAGAGTATGGCCGGGTATTCCCGGTCGGAATCAGAATCTTTCTCTGTGA ACGGACCTTATCTTTACGAAGATTTCAAAATTCATTGCTGTATTTCACTT CACTATACATGAGATAAACTCTTGTACAGAGATTAGTGATTAGTCCTTTT TTCCCTGGTGCAGTTGAATTCTCTATAACTCAAACACACACACAAGCCCA GCCGGCACACAACGTTGTTTCAACGTCTATCTAACGTTCTCAACGTCCAT ATAACGTTAGATGAACGTTGAAACAACGTTGTGTGCCTGCTGGGAGTAGT TAAGGAAATTTTGAGTTATCAAGATTGGTTTATGAGGCATTGTCAACTGA ACAAGAAGAAAAGAAGACTTGTTTGAGTTAAGAAGTGTATAGAGGTTCGA GCTATGGAGACTTCACTGTATTTTATCTCGGAGAATTTATTTAGTTTGTA GGTTAAATGTTTACAGTTTTGAGTTATATCTTTAAAAATAGTTAATGCCA CTTGCATCATAAAGAAATCGGTCAGGGATTACAGTTTTGAGTCTTGACTT CCCTTCTTACATTGTTATTTCAGCTCATGATTGTGCTTATGATCAGAGAG GTGCTTGGTGGTATAACGGTTGTGAGACAAGCAATCTGAATGGAATTTAT GACTCCTTCAATAAAGAGAAAAATCCCGATGAAGCGTTTGGTTGGAATCC CTTCCGTTTGGAATTCTCTGAAATGAAAGTTCGACGGAAGTAATTGCCCG TGTGGTGCTATCCTTGATAAAGACATTGACTACATTTCTACGTTTCCCTC TAAAAAGGGTACTAATTTTCTTGAGAGTAATTTTTATGTTATGAAATCAG CCTTTCGGGTATTTTAGAAACCAGGAAAATAAAATAGCGGAGAAAAATAA TATATTGAATTGAATTTTATTGAACTGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003740XLOC_003740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006664-exon-sc0000069-1575043694:516523..516643TCONS_00006664-exon-sc0000069-1575043694:516523..516643Clytia hemisphaericaexon
TCONS_00006664-exon-sc0000069-1575043694:510914..511270TCONS_00006664-exon-sc0000069-1575043694:510914..511270Clytia hemisphaericaexon
TCONS_00006664-exon-sc0000069-1510915933:516523..516643TCONS_00006664-exon-sc0000069-1510915933:516523..516643Clytia hemisphaericaexon
TCONS_00006664-exon-sc0000069-1510915933:510914..511270TCONS_00006664-exon-sc0000069-1510915933:510914..511270Clytia hemisphaericaexon
TCONS_00006664-exon-sc0000069-1491911889:516523..516643TCONS_00006664-exon-sc0000069-1491911889:516523..516643Clytia hemisphaericaexon
TCONS_00006664-exon-sc0000069-1491911889:510914..511270TCONS_00006664-exon-sc0000069-1491911889:510914..511270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:510914..516643 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 0.162397 0 0.0748901 0 0 0 0 0 0 0 0 0 0.915152 0.865858 0 0 0 0
Blast
BLAST of TCONS_00006664 vs. Swiss-Prot (Human)
Match: TENR (Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 7.556e-16
Identity = 39/97 (40.21%), Postives = 52/97 (53.61%), Query Frame = 1
Query:    7 NAYKLHISGFSGNIGQDKMNYHNGMKWSTRDRDNDLRPAHDCAYDQRGAWWYNGCETSNLNGIYDSFNKEKNPDEAFGW-----NPFRLEFSEMKVR 282
            N YKL I  ++G  G D ++YH G  +ST DRDND+    +CA   +GAWWY  C  +NLNG Y     E    +   W     + F + F EMK+R
Sbjct: 1251 NLYKLRIGSYNGTAG-DSLSYHQGRPFSTEDRDNDV-AVTNCAMSYKGAWWYKNCHRTNLNGKYG----ESRHSQGINWYHWKGHEFSIPFVEMKMR 1341          
The following BLAST results are available for this feature:
BLAST of TCONS_00006664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENR7.556e-1640.21Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3[more]
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