TCONS_00006640 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006640
Unique Name	TCONS_00006640
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3148

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000069:424827..428825-

transcript sequence

>TCONS_00006640 ID=TCONS_00006640|Name=TCONS_00006640|organism=Clytia hemisphaerica|type=transcript|length=3148bp
ATTTTGAATAAACTGTCACTAAAACTTGGAAAAGGTGATTCCCACATGGG
TGCTAAGATTCTTGGAAAACTATTGAACCCTGAGAGGTTGAAAAAAGATG
CATCAGAGGTTGAACGGTTGGATAAACAACCATTCCACGAAGAAGAGGCG
TCGAGGAAGGATACTCTTCGAAATGACGAGATGCTGAGTCGGCTGGAAGG
TCACATTATGGATAACCTGGCCTTCAAACTTGGACAGGGTAACAGCCAAC
ACGGTGCAGAATTATTAAGTAGGATTTTAAATGGTGGTTCTATTATGAAT
GATCAACCTGGTTCACGTAAAGATGGAGTGCCATCGACAACTTGGTACAC
ATTCCCGAATTTCGTGCAAGAATTTAAAAGTGGAAAGAATATAAGAGACC
TGGTTTCAGTACAGAATGAAGATGCGACAGATTCTCCAGGGTGGTTTCCA
CTCTCGATGTTCAAAGGCTTTGAAAACAACTTAAAACTTCCATTTGTACC
TTACTCTGTATCacgaaatggtgaaattaaCATCGAAACCAGCGACTCTA
ACAAAGGGTCCAAAAAGTCCAGTCCGTATTCTTTACCTTTGGTCAGAAAC
CCACACGGAGGTATGGTCTTTTTGACTCATTCGTATGGAAATACAAAAAG
CGGACCGTACCTCGTGGACCATTGGGGCCATGCTGTAGATCTGAGTAAAA
GGAACTTCCCTGGATATGTTTTGACGAGTCAAACCAGCAAACGAGCTTAC
TTGTATGTTCCTGTGAGTGCGATGGCTGGTCAGCAAAATTCAACCGATTC
TGGGAAATGGATGAATGAAAACCAAGTGGTACTGACCCCAAAAGGCCCAA
TGAAGTTACAGAATTCAGGGTGCCGGGACCATACTAAAAGAAGTGAcatc
aaatcaaaattagaTTCCCACCATCATCATGTTAAGAGGAACGAAATTCa
tcaaaagttcaagaaaaagAGTCTAGTACCAACAACTCTAGATGAACGAA
TATTTTCTTCATCTCCTTTCAAAGAAGTCACTCAAGCAAAGAGGAAAGTT
CTGATTCCCACTAAAGACACATCACCACACAATCAGAAGTTTCTACTTCA
AAAGACATTCAAAACGCCAGCTCTACCAGCAAGTAAACGCATTGTTGTCC
CAACAGACACAGATCTCAAATATGCCAAACTGCAACAACATCAAAAGCAA
ATGAACCAAACACTACACGACGGTATTGGAAAATCATATCAGCCTCAAAC
ACAGATTTCCTTAGAAAACCCAACCAGCAAATTTGAATTATCCTCCAACG
ACCGGCGAGTGTTTACTCATAACGGTGATTCTAATTCCCAAAATGACCAA
CTATCTTCTACAAATGACCAGTCGCGCGGTTTAGGATCGGCCGCCGATAA
ACGGCAAATGCATATTCATACCTCGCATGTTTCGTTCGGTCAATTACACC
AAGACCATCCTCATTTTGCGTCTGATGATTTTTTAAACGGTTCTTACATC
GAAGCGGAACCGCTGAACACCGGAGACCATATCATGGATGGTTATTCTTC
CTTTCATGACGGAAGTCCGGAAAATCTAGCACATGCGCACCACTCTTACA
ATGATCATACTGAGCATGTTTACTCTGGAGGTTTCGGTGGTGATGGACAG
ATTAATTTCGGACATGACTTTGGACATGATTTCGGACATGAAGGTGAAAA
CGAGGCTGTGCATGCGTTTGACACAGAAGATCATGAGGCCGGACATATAG
AAGAAACAAATGAACATCACCTCGAACATGGATTGAGTTTCGGACACGGA
GAAGAGCACGGGTTGGATTTAGGGCATAGCGATACTCATGGGTTGGAATT
TGCACATTCAGAGGAACACCATGAAGGGCGTCATCTTATTCCAGAGAAAC
ACACTCGAAAACCGCCCATTGGACAACTAGTGCCAAATTTCAAATCTAAA
CACATTGAGATGACAGGAACAAAAAAAGCAAATGTTAATTCTGAACCTCT
TCGTGAAAACCAATACCCAATAAGTCGACTCGTACCAAATTTCGATTCTG
AAACAACTAGCAGTGAACAAAATTCAGAAGGTGGTTCATCGAAGAATCGT
AACACATTCGAACGTCGAGGAGAACTTCCCGATTTCACCCAAACTGCTTC
TCATTTTTCGTTCACACACGGACCTATAACTTCTGAAGTTGGAAATATCG
GATTTTCCAATTACCACGGTACGGATCACGCCACTAAAGGACATTATGTG
TCATCCTTCGGTGGTACAATCGCTCGTGTTGGGCTAGATGGTGGAAGTGG
AAACCAGGTCGGTGTTTCATCAGATGGAAACCACGCTCATGGTGTATTTG
CTGAAGGTGAGGGAGGCCATGGAGGAGCTGGTTTCTCTACTAATGGTCAT
TTCGGTGGAATTGGTATCAGCTCTAATGGCCATCTTGAAGGAGCAGGATT
CGGATCAGATCTCAACCACGGAGATGGTGGATTTTCTACTGGTGGACATC
TTGAAGGAGCATACACAGCGGAAACACACCTTGGAGGAGCAGGATTCGGA
TCAGATCTCCACCACGGAGATGCTGGATTTTCTACTGGTGGACATCTTGG
TATCGGAGGTTTGGCTCATGACATACATGGCTCACACCTTGGAGGAGAGT
TTGGGGTACAATACGGTGGAGTGTCTGCTAATGCACACCCTGTAGGAGCG
GAGATCAATCACCTGGAAGGAGGTCTTAATAACGGTGGAGGGGAGAATTT
TAACCTCGGTGGAGGAGACGGTGCACATCTTGGTGGAGAGCATACTACCT
TCGATTTCGGTCACCATGGGGAAGAGTTCATTGGTGATTTACACGGTGAA
GGAGACCATCATGGTGACTTTTTGAGCACTCCTTCAGGAGGAATGTGTTT
ACACGACTACCATCATGGCAGTCCCATGAGACTTCTCCCTTCCCATGACG
GTGCAATGCATTTAGAAACGCCGGATATCCACATCAACGGTCCTGTCCAT
CATGAATACACCCATGTTGAAGTCGAAGAAGAGAAAAAACCTCCAGACCT
CAAACCCGGACAAACTCTCAAGACACCATACGGACCAATGAAGTTGGTAC
CCGCTGACGCACCAGCTGGTGGCGGTGGTGGCGGAGGCGGAGGCGGTG

Run BLAST on NCBI

transcript from alignment at sc0000069:424827..428825-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006640 ID=TCONS_00006640|Name=TCONS_00006640|organism=Clytia hemisphaerica|type=transcript|length=3999bp|location=Sequence derived from alignment at sc0000069:424827..428825- (Clytia hemisphaerica)
ATTTTGAATAAACTGTCACTAAAACTTGGAAAAGGTGATTCCCACATGGG
TGCTAAGATTCTTGGAAAACTATTGAACCCTGAGAGGTTGAAAAAAGATG
CATCAGAGGTTGAACGGTTGGATAAACAACCATTCCACGAAGAAGAGGCG
TCGAGGAAGGATACTCTTCGAAATGACGAGATGCTGAGTCGGCTGGAAGG
TCACATTATGGATAACCTGGCCTTCAAACTTGGACAGGGTAACAGCCAAC
ACGGTGCAGAATTATTAAGTAGGATTTTAAATGGTGGTTCTATTATGAAT
GATCAACCTGGTTCACGTAAAGATGGAGTGCCATCGACAACTTGGTACAC
ATTCCCGAATTTCGTGCAAGAATTTAAAAGTGGAAAGAATATAAGAGACC
TGGTTTCAGTACAGAATGAAGATGCGACAGATTCTCCAGGGTGGTTTCCA
CTCTCGATGTTCAAAGGCTTTGAAAACAACTTAAAACTTCCATTTGTACC
TTACTCTGTATCACGAAATGGTGAAATTAACATCGAAACCAGCGACTCTA
ACAAAGGGTCCAAAAAGTCCAGTCCGTATTCTTTACCTTTGGTCAGAAAC
CCACACGGAGGTATGGTCTTTTTGACTCATTCGTATGGAAATACAAAAAG
CGGACCGTACCTCGTGGACCATTGGGGCCATGCTGTAGATCTGAGTAAAA
GGAACTTCCCTGGATATGTTTTGACGAGTCAAACCAGCAAACGAGCTTAC
TTGTATGTTCCTGTGAGTGCGATGGCTGGTCAGCAAAATTCAACCGATTC
TGGGAAATGGATGAATGAAAACCAAGTGGTACTGACCCCAAAAGGCCCAA
TGAAGTTACAGAATTCAGGGTGCCGGGACCATACTAAAAGAAGTGACATC
AAATCAAAATTAGATTCCCACCATCATCATGTTAAGAGGAACGAAATTCA
TCAAAAGTTCAAGAAAAAGAGTCTAGTACCAACAACTCTAGATGAACGAA
TATTTTCTTCATCTCCTTTCAAAGAAGTCACTCAAGCAAAGAGGAAAGTT
CTGATTCCCACTAAAGACACATCACCACACAATCAGAAGTTTCTACTTCA
AAAGACATTCAAAACGCCAGCTCTACCAGCAAGTAAACGCATTGTTGTCC
CAACAGACACAGATCTCAAATATGCCAAACTGCAACAACATCAAAAGCAA
ATGAACCAAACACTACACGACGGTATTGGAAAATCATATCAGCCTCAAAC
ACAGATTTCCTTAGAAAACCCAACCAGCAAATTTGAATTATCCTCCAACG
ACCGGCGAGTGTTTACTCATAACGGTGATTCTAATTCCCAAAATGACCAA
CTATCTTCTACAAATGACCAGTCGCGCGGTTTAGGATCGGCCGCCGATAA
ACGGCAAATGCATATTCATACCTCGCATGTTTCGTTCGGTCAATTACACC
AAGACCATCCTCATTTTGCGTCTGATGATTTTTTAAACGGTTCTTACATC
GAAGCGGAACCGCTGAACACCGGAGACCATATCATGGATGGTTATTCTTC
CTTTCATGACGGAAGTCCGGAAAATCTAGCACATGCGCACCACTCTTACA
ATGATCATACTGAGCATGTTTACTCTGGAGGTTTCGGTGGTGATGGACAG
ATTAATTTCGGACATGACTTTGGACATGATTTCGGACATGAAGGTGAAAA
CGAGGCTGTGCATGCGTTTGACACAGAAGATCATGAGGCCGGACATATAG
AAGAAACAAATGAACATCACCTCGAACATGGATTGAGTTTCGGACACGGA
GAAGAGCACGGGTTGGATTTAGGGCATAGCGATACTCATGGGTTGGAATT
TGCACATTCAGAGGAACACCATGAAGGGCGTCATCTTATTCCAGAGAAAC
ACACTCGAAAACCGCCCATTGGACAACTAGTGCCAAATTTCAAATCTAAA
CACATTGAGATGACAGGAACAAAAAAAGCAAATGTTAATTCTGAACCTCT
TCGTGAAAACCAATACCCAATAAGTCGACTCGTACCAAATTTCGATTCTG
AAACAACTAGCAGTGAACAAAATTCAGAAGGTGGTTCATCGAAGAATCGT
AACACATTCGAACGTCGAGGAGAACTTCCCGATTTCACCCAAACTGCTTC
TCATTTTTCGTTCACACACGGACCTATAACTTCTGAAGTTGGAAATATCG
GATTTTCCAATTACCACGGTACGGATCACGCCACTAAAGGACATTATGTG
TCATCCTTCGGTGGTACAATCGCTCGTGTTGGGCTAGATGGTGGAAGTGG
AAACCAGGTCGGTGTTTCATCAGATGGAAACCACGCTCATGGTGTATTTG
CTGAAGGTGAGGGAGGCCATGGAGGAGCTGGTTTCTCTACTAATGGTCAT
TTCGGTGGAATTGGTATCAGCTCTAATGGCCATCTTGAAGGAGCAGGATT
CGGATCAGATCTCAACCACGGAGATGGTGGATTTTCTACTGGTGGACATC
TTGAAGGAGCATACACAGCGGAAACACACCTTGGAGGAGCAGGATTCGGA
TCAGATCTCCACCACGGAGATGCTGGATTTTCTACTGGTGGACATCTTGG
TATCGGAGGTTTGGCTCATGACATACATGGCTCACACCTTGGAGGAGAGT
TTGGGGTACAATACGGTGGAGTGTCTGCTAATGCACACCCTGTAGGAGCG
GAGATCAATCACCTGGAAGGAGGTCTTAATAACGGTGGAGGGGAGAATTT
TAACCTCGGTGGAGGAGACGGTGCACATCTTGGTGGAGAGCATACTACCT
TCGATTTCGGTCACCATGGGGAAGAGTTCATTGGTGATTTACACGGTGAA
GGAGACCATCATGGTGACTTTTTGAGCACTCCTTCAGGAGGAATGTGTTT
ACACGACTACCATCATGGCAGTAAGTGACGTAATCCATTTAATCAGTCCA
GTACTAAAGATTTCGAGAAATTAGACATTTTACCTGACTTTACAAATCTT
ACAATTATCTTTTTTGTTCTTGACGACTGAATTGTCGATACGGGTATTTC
GAACGCTCCCTTGGAAAGCAAGTTATCTTGAATTAAATTCTTTAGAAGAC
CGATTAATTTAGAGTTTCAGTAGTATTAGAGATTTGTTTAATAGTACAAG
AAAGTGTGTGCAGGTATTAACAGGCTACATTGAGCTCTTCCAGAAAATTT
TTGTACATAGGAGGGGAGATAAAGGATATTGGATAGTGGGTAGGGGTAGT
GAAAAATCTGCAGAATTTGCCTGTTTTAGGGGCAAACTTGCTCTGATTAG
GGGTGATTTTGAATGTCCGGGGGTAAACTGATGCTTGTCCGGGGGGGGGG
GAAAAAAATTAAAAAGGGGGGGGGGGGTGGAGGATATAACATTTTTTGGA
AATTCCCCCCTCGGACGTTGTAAATTGTGCCCCCCCCCCCCGGAAAAAGG
CCCCCCCCCCCCCCCTTTTTAATTTTTTTCCCCCCCCCCCGGACAACGGA
TCTCCCCCCCCCCCCCCATATTCAATTTTTTTTCTGGAAGAGCCCATAGT
ATAAGTATCCAATGTAGATAATAAGTGTTTTAAATTCTGAAGAGATTAAG
AATTTAGGTAGAGATATTCATTTCAAGTTTTTGTTTTGTTTTATGACTAC
TAAAACATAGGCCAGTCTATAAGTTTAAATTTGGCCCATTATTTTGCTTT
CTTCAATCATTCTTTAAACCAAAATGACCGACATTGACTTTGACTAGACA
TGGACAAATTCCCCCTTTCAGGTCCCATGAGACTTCTCCCTTCCCATGAC
GGTGCAATGCATTTAGAAACGCCGGATATCCACATCAACGGTCCTGTCCA
TCATGAATACACCCATGTTGAAGTCGAAGAAGAGAAAAAACCTCCAGACC
TCAAACCCGGACAAACTCTCAAGACACCATACGGACCAATGAAGTTGGTA
CCCGCTGACGCACCAGCTGGTGGCGGTGGTGGCGGAGGCGGAGGCGGTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003739	XLOC_003739	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00006640-exon-sc0000069-1575043694:425906..428825	TCONS_00006640-exon-sc0000069-1575043694:425906..428825	Clytia hemisphaerica	exon
TCONS_00006640-exon-sc0000069-1575043694:424827..425054	TCONS_00006640-exon-sc0000069-1575043694:424827..425054	Clytia hemisphaerica	exon
TCONS_00006640-exon-sc0000069-1510915933:425906..428825	TCONS_00006640-exon-sc0000069-1510915933:425906..428825	Clytia hemisphaerica	exon
TCONS_00006640-exon-sc0000069-1510915933:424827..425054	TCONS_00006640-exon-sc0000069-1510915933:424827..425054	Clytia hemisphaerica	exon
TCONS_00006640-exon-sc0000069-1491911889:425906..428825	TCONS_00006640-exon-sc0000069-1491911889:425906..428825	Clytia hemisphaerica	exon
TCONS_00006640-exon-sc0000069-1491911889:424827..425054	TCONS_00006640-exon-sc0000069-1491911889:424827..425054	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000069	supercontig	sc0000069:424827..428825 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.35556	4.26196	3.14784	1.966	0.872677	0.898275	3.61097	3.96897	1.45521	2.27679	2.31566	1.9708	3.53435	3.75523	2.23039	6.91935	2.17119	2.44202	0.658486	0.498846	2.32339	2.09549	1.92605	2.21458	4.05825	4.99121	0.603399	0.551406	0.714702	0.300555

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00006640 vs. Swiss-Prot (Human)

BLAST of TCONS_00006640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00006640 (transcript) - C. hemisphaerica