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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006588 ID=TCONS_00006588|Name=TCONS_00006588|organism=Clytia hemisphaerica|type=transcript|length=2689bpRun BLAST on NCBI transcript from alignment at sc0000069:322600..335920+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006588 ID=TCONS_00006588|Name=TCONS_00006588|organism=Clytia hemisphaerica|type=transcript|length=13321bp|location=Sequence derived from alignment at sc0000069:322600..335920+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006588 vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 5.391e-69 Identity = 198/714 (27.73%), Postives = 329/714 (46.08%), Query Frame = 3
Query: 180 PGLEIARKHIMKTNLLGKHKLQFNYVRPGTTLILFLKQLAAF------NMKHFLTIGPASSRDITLISPLVTENSMIQYNLNGLVNDFEDVNMYPYLFNFCVLFSGYERALTTFLHHHNWTRVAFIYISDTTKFSDTYYRSATSTEVHVRERGINVERLEKFSMFDDSTRANVPQWN-RILKSTRDDNDLRIYVYFFNVLAMRYTLCELYKLGMYGPKYVHIV---FHSKWFVYYKGFARGRTNCTVEQENIVLKNFVFMNRASKRDDDILTVANLTVGQINSEVKASFNKKFPKHIYPNEKLDSESLYYYDALWSFAKSIN------HISKKHPRFVDNFDNWEKNTTRLSIMTDAMSNLDFEGVTAKIKFHQKGNIRRLNSNIDFKKYDGNSSTTKTGKVNTTL--MDVIGDDGNYVDRFRTEWEFPIPLDAPKIVESTKEYGETVLIIIWLFAGAGILLCLIFLTINIYYRQVDFIKLSSPNINNLICVGGIVTYISIFLGGLDTTIVDVEKVPLFCNISIVVLSVGFTLTFGSLFSKTWRIYRIFTKKNSIRSVVIRDTHLFGVVMVLLLIDFAMFVCFLAIAPYHLQAQVIDEKLIPS-EDIILKTIINRCTSDHQNWFLGAMFFYKGLLMLFGLFLAYETKNIKVESINDSKYIGFAVYNVSLFATLGSIVFTSLYNTEHYRASYIVFCVCIIQSTTVTLCLIFGPKV 2264
P +E+A + I +LL + F +R T K L AF H + G ++I+ + +++Q + D YPY F + A+ L H+ W RV + D +FS+ VR V E + D + +N P + + LK ND+RI + F+ C Y+ MYG KY I+ + W+ A + C + ++ ++ ++ I T++ T Q E + P + Y YD +W AK++ H S +H R D F+ + R I+ +AM+ +F GVT ++ F N R+ + I F ++ +S K G+ N +++I D R + P P D I+E ++ + I+ G+++ FL NI R IK+SSP +NNLI +GG+++Y SIFL GLD + V + C + +L+VG+T FG++F+KTWR++ IF K ++ +I+D L +V +LLID + +C+ A+ P + + P+ DI ++ ++ C + H +LG ++ YKGLLMLFG FLA+ET+N+ + ++NDSKYIG +VYNV + +G+ V S + + + + II +T+TLCL+F PK+
Sbjct: 79 PAVELAIEQIRNESLLRPY---FLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTL-TQDVQRFSE------------VRNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKG----NDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANS-SRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGVGPSKFHG---------YAYDGIWVIAKTLQRAMETLHASSRHQRIQD-FNYTDHTLGR--IILNAMNETNFFGVTGQVVFR---NGERMGT-IKFTQFQ-DSREVKVGEYNAVADTLEIINDT------IRFQGSEP-PKDKTIILEQLRKISLPLYSILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIF-KNVKMKKKIIKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSMEPDPAGRDISIRPLLEHCENTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGAAV--SFLTRDQPNVQFCIVALVIIFCSTITLCLVFVPKL 744 The following BLAST results are available for this feature:
BLAST of TCONS_00006588 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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