TCONS_00006557 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006557
Unique NameTCONS_00006557
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006557 ID=TCONS_00006557|Name=TCONS_00006557|organism=Clytia hemisphaerica|type=transcript|length=785bp
tatgtacacgctttttttataagaatagtgtactttagATGAGGGTCGag
tattcttaagaaaatgccaaaattgagggtgaagtattcttaacatattc
ttatttttttagacttttttacaaacatgagaaatgatcagtttgagttt
tggacttttgaatgaacattttggttaaaattttatttcttcctcaaagc
ttcaatttatctttTACTGTATTCATACGGACGTTGTGAACATCAGATAA
ACGTTGACGCAACGCTGTGTGCCAGATTTGGATGTTAAAAGAACGAGAAC
AGTATTAGGCATGCGTGTTATCGATGCAGGAATTGTCAGTCGAGCACACT
GCCAAGCAATAGAAAATCAGAAAGCTCAACATAAAGCTTCGAAATGAGTG
AATGTATTTGAGCGGCTTTGCATCAACAGCGGATATtataataagaaaaa
acaacaattttcttTCATCGGGATTTCGAATGAATTAACCAATCGACCCA
ACCCGAACATCTCGCCCAAACCTCTAAAGATAATTAACTGTGATGACCAA
AGGGATCAATATCTGCTCTCTAAAATATTCAAGTAATTAGTCCCTTGATT
GTCATTGGTCCCTTGAGGAAAGGCGCGGTTAAacaaatagaaaatattta
tttttcccagTGCAATTATTGACGAGCTAGTACAAACCaattaatcaaaa
gaaaaaacaaacgaaagaatttttcttcgtatttttcttcaaataacatt
ttttcctcgtaataagatgaaattttttccgcTTT
Run BLAST on NCBI

transcript from alignment at sc0000067:564286..565070

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006557 ID=TCONS_00006557|Name=TCONS_00006557|organism=Clytia hemisphaerica|type=transcript|length=785bp|location=Sequence derived from alignment at sc0000067:564286..565070 (Clytia hemisphaerica)
AAAgcggaaaaaatttcatcttattacgaggaaaaaatgttatttgaaga
aaaatacgaagaaaaattctttcgtttgttttttcttttgattaattGGT
TTGTACTAGCTCGTCAATAATTGCActgggaaaaataaatattttctatt
tgtTTAACCGCGCCTTTCCTCAAGGGACCAATGACAATCAAGGGACTAAT
TACTTGAATATTTTAGAGAGCAGATATTGATCCCTTTGGTCATCACAGTT
AATTATCTTTAGAGGTTTGGGCGAGATGTTCGGGTTGGGTCGATTGGTTA
ATTCATTCGAAATCCCGATGAaagaaaattgttgttttttcttattataA
TATCCGCTGTTGATGCAAAGCCGCTCAAATACATTCACTCATTTCGAAGC
TTTATGTTGAGCTTTCTGATTTTCTATTGCTTGGCAGTGTGCTCGACTGA
CAATTCCTGCATCGATAACACGCATGCCTAATACTGTTCTCGTTCTTTTA
ACATCCAAATCTGGCACACAGCGTTGCGTCAACGTTTATCTGATGTTCAC
AACGTCCGTATGAATACAGTAaaagataaattgaagctttgaggaagaaa
taaaattttaaccaaaatgttcattcaaaagtccaaaactcaaactgatc
atttctcatgtttgtaaaaaagtctaaaaaaataagaatatgttaagaat
acttcaccctcaattttggcattttcttaagaatactCGACCCTCATcta
aagtacactattcttataaaaaaagcgtgtacata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003715XLOC_003715Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006557-exon-sc0000067-1491911889:564286..565070TCONS_00006557-exon-sc0000067-1491911889:564286..565070Clytia hemisphaericaexon
TCONS_00006557-exon-sc0000067-1510915933:564286..565070TCONS_00006557-exon-sc0000067-1510915933:564286..565070Clytia hemisphaericaexon
TCONS_00006557-exon-sc0000067-1575043694:564286..565070TCONS_00006557-exon-sc0000067-1575043694:564286..565070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:564286..565070 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0697391	0.0682288	0.083062	0.262547	0.158376	0.296539	0.103807	0	0	0.246125	0.737348	0	0.244823	0.375332	0.184951	0.473923	0.13095	0.616634	0.535967	0.43571	0.0706217	0	0	0.236078	1.26685	0.991478	0.478546	0.487563
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006557 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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