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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006554 ID=TCONS_00006554|Name=TCONS_00006554|organism=Clytia hemisphaerica|type=transcript|length=1980bp
TTCGAATATCAAAATTCAGACGTTGTAGATAACATCACAAAGGGCTTGAG
TTACCGTCAGCACAAATGGTATAaggctttcagaaaaatataagcTGTGA
GGACGAACTGTAAAagtagaaaatgatttttgatattcGGAATCTTGGAT
AAAGGAAAAACCAATTACAAATTACAAACGTATGAGAGATTCAATGAAGG
ATTTGAACCAGGTTCCGGAGTTCTTTTTGTGGTATTTCTTCCTCATTCTT
TTAttataatgaaaaataaaagcctGTATTTCATCTACTGAAAGTTATCT
AACTATaaatttttaatagttttttctTGTCTATAGGGGCCTCTATAATA
GTTTACACGACTATTAATGTTCATTTGATCATTCCGACGTGGATGTTATT
TTTCGTCATTTGGAACCACACGGATAGGCTCAATGCCCTCAATATATCGA
TTTGGTCTCACTCGAATGTCTCGAACTTTTTCCAAAAGAGTGCCCCATTG
TAATTCACTCAATTTAAAGTTTTCGTACATGTTGACGGATGGCATCCAGA
AAATTGGGCATTCCTCTGTATCAAAACTCTCCTCCAAGCTTTGTAAGAGA
GAATCGATGCAACGATCAGAATTATCCAACCCGTCGACACCATGTCGCTC
TAacgtgaaaaataaaatatatttcaaatggATAGATTTCAGCTTGTTAG
CGGACAAAGGGAACACGTGATTTTTACAAATTGTTCGAAAACCAATGAAA
CATTTCCGAATCGATGTTGGAACGTGTTTCATTAATGCCACTTCAGCTTT
TGAAAACGATATCCGCCATGTTGATCCAGTTCTCATCCCTTGTTCTCGAG
GCACAAAATGGCAGCCGTTTTCCTTTATTGCATCTATTTCACCTTTCGCC
GGCCATTTAGCATTTTCTCTTTGTCCCCAATCACTTACACTTTTGTCGGT
AGGCCATTCATTACATTTTAAGGAATACGTTAAATCACAATGAAAGCGAT
CATGTTTATCTTTCTCCGATCCAAGTTTGTATTTGATTGAAGGCCCTTTA
ATGTCGATGCGTGCAAAGTTAACATACCTCTGCAAGCAATACATGCAAAA
TAGTTGACAACAACTTTCCTCAACGTAATCTGGGAACGAATCAATAGTCA
AAGAACGAATTGTTTTCTTCATCAATTTCTTGATAGGATATCCAGGATAT
TCCCTATCATTAGAAGTGATGTTGAAAAAGGGCGGGGTTGTATCTTGAGT
TACCCGAACCCCTGGTCTATCTTCAGTAATGTTTGATGGCCAGTCCCATT
CCCCTTCGTATGTTAAAAGTGTAGCGTGGTATTCTTCCGTCGATTCTCGA
TTGAAACTTACAAAATCTGTCTTAGGCGAAATCATAAAATCAAGGTCAGA
AACCAATGCATGATTTTCAATGATAGTTTGGTTAGATGCAGAATCAATCC
AAGCCAGAGATATTGGTATACTAAGCCCCTCTGCTACACTACCAGCTAAA
AATAACTCAGTTTCAACCCTTTCAACAATGTTCAACTTTGTCTCAAGTGT
TTCTTTGGTGTTTTCAAGATATCCCAGGGCTTTGACTGTGACTTGCTGTT
TCATATCTTCCAAATTTGTTGGTATGAGACCAAACAAGTTATTTAAACAT
TGTTCAAGAGGTTCTGGAGACATATTTAGTTGGATTTGTTTGGTTGGCTT
TAAATAACACCATTGGCAGAGGAAGATCAAAATAAATATGACTACTGCTA
TTGCACATCCCGTTGCGACATTTATTTTATAATATTGCTTTGTATAAAGT
GGGAGTGTGAAAACCAATGCTGTAATACACAAGCCAATCAAGAGAAAGAT
TGATAAAGACAACCAAATCGTACGACATTTAATAATTGTTAACGGTGGCC
GATTTCTTATCTTTTTGAAGTATCTCCAACAAGCCATATTGCCTCTGCAC
AAACTAACTTTACAATGAATAATTATTTCG Run BLAST on NCBI protein sequence of TCONS_00006554-protein >TCONS_00006554-protein ID=TCONS_00006554-protein|Name=TCONS_00006554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=527bp
EIIIHCKVSLCRGNMACWRYFKKIRNRPPLTIIKCRTIWLSLSIFLLIGL
CITALVFTLPLYTKQYYKINVATGCAIAVVIFILIFLCQWCYLKPTKQIQ
LNMSPEPLEQCLNNLFGLIPTNLEDMKQQVTVKALGYLENTKETLETKLN
IVERVETELFLAGSVAEGLSIPISLAWIDSASNQTIIENHALVSDLDFMI
SPKTDFVSFNRESTEEYHATLLTYEGEWDWPSNITEDRPGVRVTQDTTPP
FFNITSNDREYPGYPIKKLMKKTIRSLTIDSFPDYVEESCCQLFCMYCLQ
RYVNFARIDIKGPSIKYKLGSEKDKHDRFHCDLTYSLKCNEWPTDKSVSD
WGQRENAKWPAKGEIDAIKENGCHFVPREQGMRTGSTWRISFSKAEVALM
KHVPTSIRKCFIGFRTICKNHVFPLSANKLKSIHLKYILFFTLERHGVDG
LDNSDRCIDSLLQSLEESFDTEECPIFWMPSVNMYENFKLSELQWGTLLE
KVRDIRVRPNRYIEGIEPIRVVPNDEK Run BLAST on NCBI transcript from alignment at sc0000067:484940..486919 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006554 ID=TCONS_00006554|Name=TCONS_00006554|organism=Clytia hemisphaerica|type=transcript|length=1980bp|location=Sequence derived from alignment at sc0000067:484940..486919 (Clytia hemisphaerica)
CGAAATAATTATTCATTGTAAAGTTAGTTTGTGCAGAGGCAATATGGCTT
GTTGGAGATACTTCAAAAAGATAAGAAATCGGCCACCGTTAACAATTATT
AAATGTCGTACGATTTGGTTGTCTTTATCAATCTTTCTCTTGATTGGCTT
GTGTATTACAGCATTGGTTTTCACACTCCCACTTTATACAAAGCAATATT
ATAAAATAAATGTCGCAACGGGATGTGCAATAGCAGTAGTCATATTTATT
TTGATCTTCCTCTGCCAATGGTGTTATTTAAAGCCAACCAAACAAATCCA
ACTAAATATGTCTCCAGAACCTCTTGAACAATGTTTAAATAACTTGTTTG
GTCTCATACCAACAAATTTGGAAGATATGAAACAGCAAGTCACAGTCAAA
GCCCTGGGATATCTTGAAAACACCAAAGAAACACTTGAGACAAAGTTGAA
CATTGTTGAAAGGGTTGAAACTGAGTTATTTTTAGCTGGTAGTGTAGCAG
AGGGGCTTAGTATACCAATATCTCTGGCTTGGATTGATTCTGCATCTAAC
CAAACTATCATTGAAAATCATGCATTGGTTTCTGACCTTGATTTTATGAT
TTCGCCTAAGACAGATTTTGTAAGTTTCAATCGAGAATCGACGGAAGAAT
ACCACGCTACACTTTTAACATACGAAGGGGAATGGGACTGGCCATCAAAC
ATTACTGAAGATAGACCAGGGGTTCGGGTAACTCAAGATACAACCCCGCC
CTTTTTCAACATCACTTCTAATGATAGGGAATATCCTGGATATCCTATCA
AGAAATTGATGAAGAAAACAATTCGTTCTTTGACTATTGATTCGTTCCCA
GATTACGTTGAGGAAAGTTGTTGTCAACTATTTTGCATGTATTGCTTGCA
GAGGTATGTTAACTTTGCACGCATCGACATTAAAGGGCCTTCAATCAAAT
ACAAACTTGGATCGGAGAAAGATAAACATGATCGCTTTCATTGTGATTTA
ACGTATTCCTTAAAATGTAATGAATGGCCTACCGACAAAAGTGTAAGTGA
TTGGGGACAAAGAGAAAATGCTAAATGGCCGGCGAAAGGTGAAATAGATG
CAATAAAGGAAAACGGCTGCCATTTTGTGCCTCGAGAACAAGGGATGAGA
ACTGGATCAACATGGCGGATATCGTTTTCAAAAGCTGAAGTGGCATTAAT
GAAACACGTTCCAACATCGATTCGGAAATGTTTCATTGGTTTTCGAACAA
TTTGTAAAAATCACGTGTTCCCTTTGTCCGCTAACAAGCTGAAATCTATc
catttgaaatatattttatttttcacgtTAGAGCGACATGGTGTCGACGG
GTTGGATAATTCTGATCGTTGCATCGATTCTCTCTTACAAAGCTTGGAGG
AGAGTTTTGATACAGAGGAATGCCCAATTTTCTGGATGCCATCCGTCAAC
ATGTACGAAAACTTTAAATTGAGTGAATTACAATGGGGCACTCTTTTGGA
AAAAGTTCGAGACATTCGAGTGAGACCAAATCGATATATTGAGGGCATTG
AGCCTATCCGTGTGGTTCCAAATGACGAAAAATAACATCCACGTCGGAAT
GATCAAATGAACATTAATAGTCGTGTAAACTATTATAGAGGCCCCTATAG
ACAagaaaaaactattaaaaatttATAGTTAGATAACTTTCAGTAGATGA
AATACaggcttttatttttcattataaTAAAAGAATGAGGAAGAAATACC
ACAAAAAGAACTCCGGAACCTGGTTCAAATCCTTCATTGAATCTCTCATA
CGTTTGTAATTTGTAATTGGTTTTTCCTTTATCCAAGATTCCgaatatca
aaaatcattttctactTTTACAGTTCGTCCTCACAgcttatatttttctg
aaagcctTATACCATTTGTGCTGACGGTAACTCAAGCCCTTTGTGATGTT
ATCTACAACGTCTGAATTTTGATATTCGAA Coding sequence (CDS) from alignment at sc0000067:484940..486919 >TCONS_00006554 ID=TCONS_00006554|Name=TCONS_00006554|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0000067:484940..486919 (Clytia hemisphaerica)
GAAATAATTATTCATTGTAAAGTTAGTTTGTGCAGAGGCAATATGGCTTG
TTGGAGATACTTCAAAAAGATAAGAAATCGGCCACCGTTAACAATTATTA
AATGTCGTACGATTTGGTTGTCTTTATCAATCTTTCTCTTGATTGGCTTG
TGTATTACAGCATTGGTTTTCACACTCCCACTTTATACAAAGCAATATTA
TAAAATAAATGTCGCAACGGGATGTGCAATAGCAGTAGTCATATTTATTT
TGATCTTCCTCTGCCAATGGTGTTATTTAAAGCCAACCAAACAAATCCAA
CTAAATATGTCTCCAGAACCTCTTGAACAATGTTTAAATAACTTGTTTGG
TCTCATACCAACAAATTTGGAAGATATGAAACAGCAAGTCACAGTCAAAG
CCCTGGGATATCTTGAAAACACCAAAGAAACACTTGAGACAAAGTTGAAC
ATTGTTGAAAGGGTTGAAACTGAGTTATTTTTAGCTGGTAGTGTAGCAGA
GGGGCTTAGTATACCAATATCTCTGGCTTGGATTGATTCTGCATCTAACC
AAACTATCATTGAAAATCATGCATTGGTTTCTGACCTTGATTTTATGATT
TCGCCTAAGACAGATTTTGTAAGTTTCAATCGAGAATCGACGGAAGAATA
CCACGCTACACTTTTAACATACGAAGGGGAATGGGACTGGCCATCAAACA
TTACTGAAGATAGACCAGGGGTTCGGGTAACTCAAGATACAACCCCGCCC
TTTTTCAACATCACTTCTAATGATAGGGAATATCCTGGATATCCTATCAA
GAAATTGATGAAGAAAACAATTCGTTCTTTGACTATTGATTCGTTCCCAG
ATTACGTTGAGGAAAGTTGTTGTCAACTATTTTGCATGTATTGCTTGCAG
AGGTATGTTAACTTTGCACGCATCGACATTAAAGGGCCTTCAATCAAATA
CAAACTTGGATCGGAGAAAGATAAACATGATCGCTTTCATTGTGATTTAA
CGTATTCCTTAAAATGTAATGAATGGCCTACCGACAAAAGTGTAAGTGAT
TGGGGACAAAGAGAAAATGCTAAATGGCCGGCGAAAGGTGAAATAGATGC
AATAAAGGAAAACGGCTGCCATTTTGTGCCTCGAGAACAAGGGATGAGAA
CTGGATCAACATGGCGGATATCGTTTTCAAAAGCTGAAGTGGCATTAATG
AAACACGTTCCAACATCGATTCGGAAATGTTTCATTGGTTTTCGAACAAT
TTGTAAAAATCACGTGTTCCCTTTGTCCGCTAACAAGCTGAAATCTATcc
atttgaaatatattttatttttcacgtTAGAGCGACATGGTGTCGACGGG
TTGGATAATTCTGATCGTTGCATCGATTCTCTCTTACAAAGCTTGGAGGA
GAGTTTTGATACAGAGGAATGCCCAATTTTCTGGATGCCATCCGTCAACA
TGTACGAAAACTTTAAATTGAGTGAATTACAATGGGGCACTCTTTTGGAA
AAAGTTCGAGACATTCGAGTGAGACCAAATCGATATATTGAGGGCATTGA
GCCTATCCGTGTGGTTCCAAATGACGAAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006554-exon-sc0000067-1491911889:484940..486919 | TCONS_00006554-exon-sc0000067-1491911889:484940..486919 | Clytia hemisphaerica | exon |
| TCONS_00006554-exon-sc0000067-1510915933:484940..486919 | TCONS_00006554-exon-sc0000067-1510915933:484940..486919 | Clytia hemisphaerica | exon |
| TCONS_00006554-exon-sc0000067-1575043694:484940..486919 | TCONS_00006554-exon-sc0000067-1575043694:484940..486919 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:484940..486919 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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