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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006544 ID=TCONS_00006544|Name=TCONS_00006544|organism=Clytia hemisphaerica|type=transcript|length=1547bp
CAATCttagaatttttgaaatcttatcAGTTTGTTGTACACTGTAGTATC
AAAATGGTAGACACGAAAACAGGCTTGTTTAAGATGAGAGagattttgac
tttgattttgctGCAAATGATTAGCTTTGCGAATGCATTGTTGGTGTTTA
TAGCTGAACAATTTGACAGAAAGCGAAAAGTAAAAAACAGTGCAAAGGTT
TCCAAAGTGCTTTGGTGCACGCGCGTTGAACCAGTGTACACTGAATGTGA
TTTTGGAAGTGATGATTTTGTTTCGGTCTTCGAACAATTTGCAGACCCGA
AAATTATCCTGAACGAGAGTGTTACGTTGTATGCTTTGACTGAAGATGAG
GCTCTTTTTGTTGACACTGGTGACGTCACAATGATGCAAGCTCAACCTGG
GTGGCTCTATTTATTCCAATGGGAATCAGCCAGGAAACTCATTTCCATGC
CTTTAGATGTCTTCCTCAAAATGTCCGAACAAATCGATTTCCCGGACTGT
CCGGTCATCAATATAGCGAACCATACCAGATGCGGAGGAACCTTAATGAG
CAGAGTATTCCAATCCATCCCAAGTGCTTTGGTCCTTACTGAACCTCAAG
CTTTGAGTTGTGTTGCTTTCTTCTCAGCACACAAAACATTCCCTCCAGAT
ATGATTCGGTGTTTATACGTCAGCACTCTGAAATGTTTGTTTAAACATGC
GACTTTACAGAACCTCGATATCGTGTGCTTGAAATCGTGGCTGCCAGAGN
TCACCTGACATGATTCGGTGTTTATACGTCAGCACTCTGAAATGTTTGTT
TAAACATGCGACTTTACAGAACCTCGATATTGTGTGCTTGAAATCGTGGC
TGCCAGAGGTGTTTATTTTAGACTTGATGTTTGAAGCTACTCCTTTAATC
AAACATATCTATCTTTACCGTAACCCTTTAACGTTCGTCAAATCATGGGA
GAAACTGTTTGCTGTCAACCAGTTCCCTATGATGCCAGTCCACGTCGTCA
AATCGAGATGTTATTTGTACCCAGTTCTTTCTAAGTCTTCTTTATTCACT
GATGAAAATATCGGAAGAATGTCCTGGTATGAGAAATGGGCATTACATTG
GATTCGATGTTACGCTGGCTTCGTGGATGTTCATAAGAAGAACCACTCTA
TTTCCACGGTCAGATTCGAAGATTTCATCTCAGATCCCGACCAAGTGATG
tctttgattttcaaatatGTTGGAATTAACGAATCGCTTTTGCCAGACGC
TAAATCGGTTTTGAAATCCGATTCTCAGAAAGGCACTATTTACACGTCGA
GATCTGGTGCGAAATTGAGGGCTAATTTGCTTACGCCCATCACCAAGGAA
TTGAAAGAGAAAGTTGACATTTTGTGTGATTTGTTTGACGCCCCTTCATT
CTGGGGCGGTGATATTGAGCTACCGAACAAATTACAAAGTTGATTAGGCA
TTTTATTGTGtggatataatatttttttgtaaatttatgaatttaaatct
tattttcttttatacCAACGATAACATTGAAATCACTTCATCATTAT Run BLAST on NCBI protein sequence of TCONS_00006544-protein >TCONS_00006544-protein ID=TCONS_00006544-protein|Name=TCONS_00006544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
ILEFLKSYQFVVHCSIKMVDTKTGLFKMREILTLILLQMISFANALLVFI
AEQFDRKRKVKNSAKVSKVLWCTRVEPVYTECDFGSDDFVSVFEQFADPK
IILNESVTLYALTEDEALFVDTGDVTMMQAQPGWLYLFQWESARKLISMP
LDVFLKMSEQIDFPDCPVINIANHTRCGGTLMSRVFQSIPSALVLTEPQA
LSCVAFFSAHKTFPPDMIRCLYVSTLKCLFKHATLQNLDIVCLKSWLPEX
T Run BLAST on NCBI transcript from alignment at sc0000067:111124..112670 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006544 ID=TCONS_00006544|Name=TCONS_00006544|organism=Clytia hemisphaerica|type=transcript|length=1547bp|location=Sequence derived from alignment at sc0000067:111124..112670 (Clytia hemisphaerica)
ATAATGATGAAGTGATTTCAATGTTATCGTTGgtataaaagaaaataaga
tttaaattcataaatttacaaaaaaatattatatccaCACAATAAAATGC
CTAATCAACTTTGTAATTTGTTCGGTAGCTCAATATCACCGCCCCAGAAT
GAAGGGGCGTCAAACAAATCACACAAAATGTCAACTTTCTCTTTCAATTC
CTTGGTGATGGGCGTAAGCAAATTAGCCCTCAATTTCGCACCAGATCTCG
ACGTGTAAATAGTGCCTTTCTGAGAATCGGATTTCAAAACCGATTTAGCG
TCTGGCAAAAGCGATTCGTTAATTCCAACatatttgaaaatcaaagaCAT
CACTTGGTCGGGATCTGAGATGAAATCTTCGAATCTGACCGTGGAAATAG
AGTGGTTCTTCTTATGAACATCCACGAAGCCAGCGTAACATCGAATCCAA
TGTAATGCCCATTTCTCATACCAGGACATTCTTCCGATATTTTCATCAGT
GAATAAAGAAGACTTAGAAAGAACTGGGTACAAATAACATCTCGATTTGA
CGACGTGGACTGGCATCATAGGGAACTGGTTGACAGCAAACAGTTTCTCC
CATGATTTGACGAACGTTAAAGGGTTACGGTAAAGATAGATATGTTTGAT
TAAAGGAGTAGCTTCAAACATCAAGTCTAAAATAAACACCTCTGGCAGCC
ACGATTTCAAGCACACAATATCGAGGTTCTGTAAAGTCGCATGTTTAAAC
AAACATTTCAGAGTGCTGACGTATAAACACCGAATCATGTCAGGTGANCT
CTGGCAGCCACGATTTCAAGCACACGATATCGAGGTTCTGTAAAGTCGCA
TGTTTAAACAAACATTTCAGAGTGCTGACGTATAAACACCGAATCATATC
TGGAGGGAATGTTTTGTGTGCTGAGAAGAAAGCAACACAACTCAAAGCTT
GAGGTTCAGTAAGGACCAAAGCACTTGGGATGGATTGGAATACTCTGCTC
ATTAAGGTTCCTCCGCATCTGGTATGGTTCGCTATATTGATGACCGGACA
GTCCGGGAAATCGATTTGTTCGGACATTTTGAGGAAGACATCTAAAGGCA
TGGAAATGAGTTTCCTGGCTGATTCCCATTGGAATAAATAGAGCCACCCA
GGTTGAGCTTGCATCATTGTGACGTCACCAGTGTCAACAAAAAGAGCCTC
ATCTTCAGTCAAAGCATACAACGTAACACTCTCGTTCAGGATAATTTTCG
GGTCTGCAAATTGTTCGAAGACCGAAACAAAATCATCACTTCCAAAATCA
CATTCAGTGTACACTGGTTCAACGCGCGTGCACCAAAGCACTTTGGAAAC
CTTTGCACTGTTTTTTACTTTTCGCTTTCTGTCAAATTGTTCAGCTATAA
ACACCAACAATGCATTCGCAAAGCTAATCATTTGCagcaaaatcaaagtc
aaaatctCTCTCATCTTAAACAAGCCTGTTTTCGTGTCTACCATTTTGAT
ACTACAGTGTACAACAAACTgataagatttcaaaaattctaaGATTG Coding sequence (CDS) from alignment at sc0000067:111124..112670 >TCONS_00006544 ID=TCONS_00006544|Name=TCONS_00006544|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at sc0000067:111124..112670 (Clytia hemisphaerica)
TCAGGTGANCTCTGGCAGCCACGATTTCAAGCACACGATATCGAGGTTCT
GTAAAGTCGCATGTTTAAACAAACATTTCAGAGTGCTGACGTATAAACAC
CGAATCATATCTGGAGGGAATGTTTTGTGTGCTGAGAAGAAAGCAACACA
ACTCAAAGCTTGAGGTTCAGTAAGGACCAAAGCACTTGGGATGGATTGGA
ATACTCTGCTCATTAAGGTTCCTCCGCATCTGGTATGGTTCGCTATATTG
ATGACCGGACAGTCCGGGAAATCGATTTGTTCGGACATTTTGAGGAAGAC
ATCTAAAGGCATGGAAATGAGTTTCCTGGCTGATTCCCATTGGAATAAAT
AGAGCCACCCAGGTTGAGCTTGCATCATTGTGACGTCACCAGTGTCAACA
AAAAGAGCCTCATCTTCAGTCAAAGCATACAACGTAACACTCTCGTTCAG
GATAATTTTCGGGTCTGCAAATTGTTCGAAGACCGAAACAAAATCATCAC
TTCCAAAATCACATTCAGTGTACACTGGTTCAACGCGCGTGCACCAAAGC
ACTTTGGAAACCTTTGCACTGTTTTTTACTTTTCGCTTTCTGTCAAATTG
TTCAGCTATAAACACCAACAATGCATTCGCAAAGCTAATCATTTGCagca
aaatcaaagtcaaaatctCTCTCATCTTAAACAAGCCTGTTTTCGTGTCT
ACCATTTTGATACTACAGTGTACAACAAACTgataagatttcaaaaattc
taaGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006544-exon-sc0000067-1491911889:111124..112670 | TCONS_00006544-exon-sc0000067-1491911889:111124..112670 | Clytia hemisphaerica | exon |
| TCONS_00006544-exon-sc0000067-1510915933:111124..112670 | TCONS_00006544-exon-sc0000067-1510915933:111124..112670 | Clytia hemisphaerica | exon |
| TCONS_00006544-exon-sc0000067-1575043694:111124..112670 | TCONS_00006544-exon-sc0000067-1575043694:111124..112670 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:111124..112670 . |
Blast
The following BLAST results are available for this feature:
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