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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006536 ID=TCONS_00006536|Name=TCONS_00006536|organism=Clytia hemisphaerica|type=transcript|length=2862bpRun BLAST on NCBI protein sequence of TCONS_00006536-protein >TCONS_00006536-protein ID=TCONS_00006536-protein|Name=TCONS_00006536-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp MAESIENNKPKMLERQISYSDKESLDTGKRHVVKTEWDVSIGGMEKKRRIRun BLAST on NCBI transcript from alignment at sc0000067:576270..596571- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006536 ID=TCONS_00006536|Name=TCONS_00006536|organism=Clytia hemisphaerica|type=transcript|length=20302bp|location=Sequence derived from alignment at sc0000067:576270..596571- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000067:576270..596571- >TCONS_00006536 ID=TCONS_00006536|Name=TCONS_00006536|organism=Clytia hemisphaerica|type=CDS|length=5166bp|location=Sequence derived from alignment at sc0000067:576270..596571- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006536 vs. Swiss-Prot (Human)
Match: GCH1 (GTP cyclohydrolase 1 OS=Homo sapiens GN=GCH1 PE=1 SV=1) HSP 1 Score: 276.559 bits (706), Expect = 4.948e-85 Identity = 127/201 (63.18%), Postives = 164/201 (81.59%), Query Frame = 3
Query: 1446 GMEKKRRIDKESDEFDKRITQMSGAVKTILENVGEDPNREGLLDTPERYAKAMLFFTKGYNLSLSEVLNDAVFNENHDELVIVKDINVFSMCEHHLVPFYGKAHVGYLPNKKVLGISKVARIVDMFSRRLQVQERLTKQIATALNEAVQPTGVGVIVDCCHMCMVMRGVQKPGASTVTSCMLGTFRDDPKTREEFLVLTRN 2048
G + +R +E +E + + ++ A +IL ++GE+P R+GLL TP R A AM FFTKGY ++S+VLNDA+F+E+HDE+VIVKDI++FSMCEHHLVPF GK H+GYLPNK+VLG+SK+ARIV+++SRRLQVQERLTKQIA A+ EA++P GVGV+V+ HMCMVMRGVQK + TVTS MLG FR+DPKTREEFL L R+
Sbjct: 52 GWKGERPRSEEDNELN--LPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDAIFDEDHDEMVIVKDIDMFSMCEHHLVPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKTREEFLTLIRS 250 The following BLAST results are available for this feature:
BLAST of TCONS_00006536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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