TCONS_00006535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006535
Unique NameTCONS_00006535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006535 ID=TCONS_00006535|Name=TCONS_00006535|organism=Clytia hemisphaerica|type=transcript|length=1558bp
CTTTAGATTAAAGATTAAATATGGCAGAAAGTATTGAGAATAACAAACCA
AAAATGTTAGAAAGACAAATCTCATATTCTGATAAAGAATCACTTGATAC
TGGCAAAAGACATGTTGTAAAAACTGAATGGGATGTTTCAATTGGCGGGA
TGGAGAAAAAACGACGTATTGACAAAGAGTCAGATGAATTTGACAAACGA
ATCACACAAATGAGTGGAGCTGTTAAAACCATACTGGAGAATGTGGGTGA
AGATCCAAACAGGGAAGGATTGTTGGATACCCCTGAACGATATGCAAAAG
CAATGCTCTTCTTCACCAAAGGGTATAACCTCAGTTTAAGTGAGGTACTG
AATGATGCAGTGTTCAATGAGAACCACGATGAGTTGGTGATTGTGAAAGA
TATCAATGTTTTCTCCATGTGTGAACACCATTTAGTTCCCTTTTATGGCC
CACGTTGGATATCTACCCAACAAAAAAGTTCTTGGAATTAGTAAAGTTGC
AAGGATTGTTGATATGTTCAGTCGAAGATTGCAAGTGCAAGAACGTTTAA
CAAAACAGATAGCGACAGCTTTGAATGAAGCTGTTCAACCGACTGGTGTT
GGAGTCATAGTTGATTGCTGTCATATGTGTATGGTGATGCGAGGTGTACA
GAAACCAGGTGCTTCTACTGTTACCAGTTGCATGCTGGGAACGTTTCGCG
ATGACCCCAAAACTCGAGAAGAATTCTTAGTACTGACCAGAAATTATAGA
TAGATTGTGGTACAGTAATGTTAGTAccaataatttaaaaataaagaatc
tCAATCCAGCATGTGTTGTACGAGACCTATTCAAACGCTCATCGAAAATA
GACATAATTTATGTTTAACTAAAGCAATTGCAAAATGGCATTATTGTGGA
TTCCTGTTTCAATTGAGCGTATCGTAGCGTAAACCAAAAGGTTTTTAAGT
ATTTCCTAACACATTTACATCGCGAAATCAGGCATTTTGGTATTCATATT
TGCTGCAGAAAAAGATcataaagatttgtttttcaatcGCTTTATATGGT
GAATATTACATCAAAACATCGATGGCAAAATATAAAGGATATAATGGTAG
TGTTAATGCATTTTCTGCTAGTGGGACGTTTCTCCTTCGAAAAGACGTTG
CTTGCTCGAAGGGTGAAGAGCGTTCTCGTACCATTAACAACCTCGTAAAA
TTCAATTTATTTAATACTATTTGTTACTGTTACTTTTTAGTATGCTAGGT
ATATTACCTTCTTTTTATGGAATGatatttagtttttattttgtccGTTT
GAACGTACGATAGACAGTACATGAACttttactgaaaatgaaatcaaaac
aaatttttgtggtaattttttacagaaaatgttTTGGAAAATTGAACAGA
TTAGGATCCGTGATTTATTTTAGTTTCAAGGTTTGCTTTTccctttttaa
aaatctagactGAAATCAATTTAAGGTCCGAATGCATTTCCATAGGCTAT
TTTATTCactaatatttttcaaatatttttattgatgTAGTTTTTTCGCT
GCCCCGCG
Run BLAST on NCBI

transcript from alignment at sc0000067:576270..580344-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006535 ID=TCONS_00006535|Name=TCONS_00006535|organism=Clytia hemisphaerica|type=transcript|length=4075bp|location=Sequence derived from alignment at sc0000067:576270..580344- (Clytia hemisphaerica)
CTTTAGATTAAAGATTAAATATGGCAGAAAGTATTGAGAATAACAAACCA
AAAATGTTAGAAAGACAAATCTCATATTCTGATAAAGAATCACTTGATAC
TGGCAAAAGACATGTTGTAAAAACTGAATGGGATGTTTCAATTGGCGGTT
AGTAGTATGGTATTACTACCCTCTAGCGTTTATTACTTTCAACCTAAATG
ACACAAATACATGGTGTCAGCCCCCCCCCCAGAAATCTGAAGGGCACCTA
GGCCAGGTTAGTAGAGGGGGGCTAATGCCTTGCAATTCTTTGGGGTTACC
TATTCATTAAGGGTACCTAGCTGTCTTGATGGAGGAGGGGCTGGTTATAT
TTTCCAAATCGAATATTTCAAAATATTTCAGATTATTGAATTTTTTTATT
AAACCACCCCAAAAATCATTAAGATTTTACGAATGACAAAAGAACAAAAA
GTGTCAATTCAAAAAATTTTTTTTTGGCTGAATGGGGGTACCTAACTCAA
AGCAATTTCTCAAGGGGATCTAAATTGCTGGGGGCATCATGCTCAATGGG
GGCACCTGAAAAGTGGGCTGAAACCATGAAATAGTGGATGCTGCAAATGG
ACCCTTGACATTTTTTTTTATAAGAAGCAATCACGCCATTTCAAAAGATT
GTTACATTTTAAATCCCTGCACAAGTTTTCATTTGTCATAAATTGACAAA
TATTTTCAGAGTTTTAAAAATAACCGCAGGTTGAGATGAGCTGGAGTTTT
TTCAAGATACTTCACTAATTGGTCATTTAAAGTGATAGAGATGACGCGTT
CTTTAGGAAAAGTAATAAGATTCTTTTATTACATCTTATAACGACCAACC
AAATCAAATAAGCGCTTGTAAAAACTCCAGCTTGTCCCCGCAAGTTAGCT
ATATTTGGTGAGCTTACCAATACAATTATTTTAGCCGGTTGACGTAGTTT
TTTCCTTGATCCTACATTTTCATGACTCTTTTATTCAAAGGGATGGAGAA
AAAACGACGTATTGACAAAGAGTCAGATGAATTTGACAAACGAATCACAC
AAATGAGTGGAGCTGTTAAAACCATACTGGAGAATGTGGGTGAAGATCCA
AACAGGGAAGGATTGTTGGATACCCCTGAACGATATGCAAAAGCAATGCT
CTTCTTCACCAAAGGGTATAACCTCAGTTTAAGTGGTAAGTCATTTGTGA
CACCAAATACAAATGTAATGTATTTCTAAACACTAGTAAACATCACGAGA
AATCAAATCTTCATGAGAAGGACAATAATCTTCCATTTCTTTAAAGGTTT
TCCTTTCCTTGAAGCTGCAAAACTCTTTATCTTAAGATCAAAAGAATATG
GGTTACTTCTCTTTAACAAAAACGCTGTTTCTCAGATTTTGCCATGTAGT
AGTTCATGAAAATGACAAGTTGTTTACTGATTGTTCATTTGATCTTTATA
CCTACTACCTCTAATCTTTATATCTGAAGAAGCTAATCAAATTTCAGAAA
ACATTAATACTTTATCCACATCATATGACAACAATCAAATGACCAATGAA
TTTTAACAACCCAAAATCCTAAAAGACAAAAGACAAAACAAACCAAATTT
CACTAGAGACACGTTACTAGAACAATTAAATCAAATTTAGCGAATAGGAA
CCCAATATTCAAAATGAAAAGAGATCTAAACCGAAAGAAAATGAAAAAAG
TATGAAAAGATGAAGACCGAAGACCTTATATTACACCTTCCTTTAAAAAT
ATTTCCTTTAATTCTAAATTATCTTTAAAGTCAATCTGTTAATACCTCTG
ATTTTGTGAAGGCTCTAACCCTATATTATAGAATGGAAGGAAGTTTCCCA
CTTTGCTGACGTTTATTTTCTCTATAAAATAGGATATTCTTTCATCTAGA
GGTACTGAATGATGCAGTGTTCAATGAGAACCACGATGAGTTGGTGATTG
TGAAAGATATCAATGTTTTCTCCATGTGTGAACACCATTTAGTTCCCTTT
TATGGTAAGGTGAGTCTAATACTTTAGCCAGTATCTGGTAAACTTAAGGC
TTCCATGTGTACATCCCGGAAATAGTTTTTGTTATAAGGAATGCAAATCA
GACTCGAAAAACACTTCCGCATTTTTGCTTAGAAAGTTTTCAAATCAGGG
GAATGTTGACAGTCAGTGATAAAGACATGTTGTTCTTTATCGTAGTTCAT
GAGTTCTTATCCTCGGTGATTTTAATAATATCTTTCTCCTTCATTTGAAG
GCCCACGTTGGATATCTACCCAACAAAAAAGTTCTTGGAATTAGTAAAGT
TGCAAGGTGTGTTGATTTCTATTCAAACTGAGTGCCTCGTCAATCTTGTT
TTTAAAAAACCTTTCGATACAATTATTACCTCCTACCAACGGATATCCAT
TTATTTACAAGTTCTTTGCTGTCAAAGACAAAGTATTTTATCCCTCTTTT
AATTAAAATTGTGATTAAAAATCAAATTTCATGAGCCCCCGATCTATATG
AGCCCATGAGCCCCAAAATCTATAAAGAAAAAAAATGTTTTTGAAAGACT
TGCAACAGGCATCTCAATGTTTTTTTTCTGTGTTTTAAGGATTGTTGATA
TGTTCAGTCGAAGATTGCAAGGTACACGTTATTATTTTTCCTTTTTAATT
TTACCAACTATTTTAAGGCTACCAAACATACCGAGTACATAATTTACATT
GATTTTCTGGCTTTTGAAATCATCGTGCAATGTTTTTAAAATGCTTATAC
CTGATCAAACATTTGCTTATTAAGAAGGGTTTATCGTTTGTATTTTCGTA
GCCATTCCTGAAATCTCACAGGCTTGGATTGTTCTTAGCTATGCCTAAAA
TCTCTTCTTATAAGATATGAATGAACCTCTTCCGATTCTTATTTTAGTGC
AAGAACGTTTAACAAAACAGATAGCGACAGCTTTGAATGAAGCTGTTCAA
CCGACTGGTGTTGGAGTCATAGTTGATTGCTGGTAAGATGTGTCCTATAT
TAGCCCTGATTAGCCATCAATATCTGGACTGTTTTACGTTTCGCCTATGT
AAAGCAACAAAAAGATTGTTGCTGATCCAAAGATTGATACAAAGTTCCAT
CAAGATGGTTTCTACCTCGTTATCCATTTTCTTTCAGTCATATGTGTATG
GTGATGCGAGGTGTACAGAAACCAGGTGCTTCTACTGTTACCAGTTGCAT
GCTGGGAACGTTTCGCGATGACCCCAAAACTCGAGAAGAATTCTTAGTAC
TGACCAGAAATTATAGATAGATTGTGGTACAGTAATGTTAGTACCAATAA
TTTAAAAATAAAGAATCTCAATCCAGCATGTGTTGTACGAGACCTATTCA
AACGCTCATCGAAAATAGACATAATTTATGTTTAACTAAAGCAATTGCAA
AATGGCATTATTGTGGATTCCTGTTTCAATTGAGCGTATCGTAGCGTAAA
CCAAAAGGTTTTTAAGTATTTCCTAACACATTTACATCGCGAAATCAGGC
ATTTTGGTATTCATATTTGCTGCAGAAAAAGATCATAAAGATTTGTTTTT
CAATCGCTTTATATGGTGAATATTACATCAAAACATCGATGGCAAAATAT
AAAGGATATAATGGTAGTGTTAATGCATTTTCTGCTAGTGGGACGTTTCT
CCTTCGAAAAGACGTTGCTTGCTCGAAGGGTGAAGAGCGTTCTCGTACCA
TTAACAACCTCGTAAAATTCAATTTATTTAATACTATTTGTTACTGTTAC
TTTTTAGTATGCTAGGTATATTACCTTCTTTTTATGGAATGATATTTAGT
TTTTATTTTGTCCGTTTGAACGTACGATAGACAGTACATGAACTTTTACT
GAAAATGAAATCAAAACAAATTTTTGTGGTAATTTTTTACAGAAAATGTT
TTGGAAAATTGAACAGATTAGGATCCGTGATTTATTTTAGTTTCAAGGTT
TGCTTTTCCCTTTTTAAAAATCTAGACTGAAATCAATTTAAGGTCCGAAT
GCATTTCCATAGGCTATTTTATTCACTAATATTTTTCAAATATTTTTATT
GATGTAGTTTTTTCGCTGCCCCGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003695XLOC_003695Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006535-exon-sc0000067-1575043694:580198..580344TCONS_00006535-exon-sc0000067-1575043694:580198..580344Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1575043694:579160..579354TCONS_00006535-exon-sc0000067-1575043694:579160..579354Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1575043694:578341..578445TCONS_00006535-exon-sc0000067-1575043694:578341..578445Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1575043694:578039..578094TCONS_00006535-exon-sc0000067-1575043694:578039..578094Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1575043694:577724..577755TCONS_00006535-exon-sc0000067-1575043694:577724..577755Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1575043694:577363..577447TCONS_00006535-exon-sc0000067-1575043694:577363..577447Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1575043694:576270..577207TCONS_00006535-exon-sc0000067-1575043694:576270..577207Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1510915933:580198..580344TCONS_00006535-exon-sc0000067-1510915933:580198..580344Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1510915933:579160..579354TCONS_00006535-exon-sc0000067-1510915933:579160..579354Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1510915933:578341..578445TCONS_00006535-exon-sc0000067-1510915933:578341..578445Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1510915933:578039..578094TCONS_00006535-exon-sc0000067-1510915933:578039..578094Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1510915933:577724..577755TCONS_00006535-exon-sc0000067-1510915933:577724..577755Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1510915933:577363..577447TCONS_00006535-exon-sc0000067-1510915933:577363..577447Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1510915933:576270..577207TCONS_00006535-exon-sc0000067-1510915933:576270..577207Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1491911889:580198..580344TCONS_00006535-exon-sc0000067-1491911889:580198..580344Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1491911889:579160..579354TCONS_00006535-exon-sc0000067-1491911889:579160..579354Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1491911889:578341..578445TCONS_00006535-exon-sc0000067-1491911889:578341..578445Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1491911889:578039..578094TCONS_00006535-exon-sc0000067-1491911889:578039..578094Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1491911889:577724..577755TCONS_00006535-exon-sc0000067-1491911889:577724..577755Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1491911889:577363..577447TCONS_00006535-exon-sc0000067-1491911889:577363..577447Clytia hemisphaericaexon
TCONS_00006535-exon-sc0000067-1491911889:576270..577207TCONS_00006535-exon-sc0000067-1491911889:576270..577207Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:576270..580344 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0395915	0	0	0	0.0898212	0.158983	0.106499	0.0385683	0	0	0	0	0	0	0.0434556	0.249242	0.108889	0	0.158671	0	0.0683258	0	0	0.18002	0.107999	0	0	0	0.0890481
Blast
[Close]
BLAST of TCONS_00006535 vs. Swiss-Prot (Human)
Match: GCH1 (GTP cyclohydrolase 1 OS=Homo sapiens GN=GCH1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.806e-45
Identity = 78/117 (66.67%), Postives = 96/117 (82.05%), Query Frame = 1 
Query:  400 ISMFSPCVNTI*FPFMA--HVGYLPNKKVLGISKVARIVDMFSRRLQVQERLTKQIATALNEAVQPTGVGVIVDCCHMCMVMRGVQKPGASTVTSCMLGTFRDDPKTREEFLVLTRN 744
            I MFS C + +  PF+   H+GYLPNK+VLG+SK+ARIV+++SRRLQVQERLTKQIA A+ EA++P GVGV+V+  HMCMVMRGVQK  + TVTS MLG FR+DPKTREEFL L R+
Sbjct:  135 IDMFSMCEHHL-VPFVGKVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALRPAGVGVVVEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKTREEFLTLIRS 250

HSP 2 Score: 121.324 bits (303), Expect = 5.195e-31
Identity = 55/101 (54.46%), Postives = 77/101 (76.24%), Query Frame = 3 
Query:  147 GMEKKRRIDKESDEFDKRITQMSGAVKTILENVGEDPNREGLLDTPERYAKAMLFFTKGYNLSLSEVLNDAVFNENHDELVIVKDINVFSMCEHHLVPFYG 449
            G + +R   +E +E +  +  ++ A  +IL ++GE+P R+GLL TP R A AM FFTKGY  ++S+VLNDA+F+E+HDE+VIVKDI++FSMCEHHLVPF G
Sbjct:   52 GWKGERPRSEEDNELN--LPNLAAAYSSILSSLGENPQRQGLLKTPWRAASAMQFFTKGYQETISDVLNDAIFDEDHDEMVIVKDIDMFSMCEHHLVPFVG 150
The following BLAST results are available for this feature:
BLAST of TCONS_00006535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GCH14.806e-4566.67GTP cyclohydrolase 1 OS=Homo sapiens GN=GCH1 PE=1 ... [more]
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