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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006533 ID=TCONS_00006533|Name=TCONS_00006533|organism=Clytia hemisphaerica|type=transcript|length=894bp
TTTTTTGATTCATAATGGCAGTCGGGATTATAATGAATTCGAACATGGCT
AATCGCGGAGAGAGTTCATCTTCATCCTCAACGAACCCTTACGACCGCTC
GCGTTTTACGCTCGATTTATCCTCGGCAGGCCCGAGCACAAGTCGGCTCC
GACATTGGGATATGTCGCCGACCGACGCCTCACCCGTTGAGGCACATCAA
AACAATCCATCAATGCTCGCATCACCATCAATGAATATGCCGATCCTATG
CCGACCATACAACCCTTACTCACCAGTCTCGGCTATCCAATCAATGGCGT
CGCCTTCACCCATGAACACTTACGCACATTCACCCGGCAACTCTTCCACC
TACTCCGCATCTCCTCTCAATTCACCACAACAACATTTCAGTCAAGAAGA
TCTTATGATGCGTTACCGTATGCAGCAACACCCGATGATGGCGGCTCCCG
GATACGGACCCCGTCCAGTTGCTCAACCGGCCAGCGAATATGCATACTAC
TATAACGAATATGGCATGAAACGCCGAAAGCGTGATGAAGAGCTTTCACA
CGAAGAACTCGAGAAACGACGTGTCCGACGTGAACGCAACAAGCAAGCAG
CTTTACGTTGCCGCACACGAAGACGTGAACGAATCGACGCTCTAGAGCAG
GAAACAACACAAATTGAAGAAGACAACACACGTGTGGAGAAAGAAATTCG
CGATCTCAAGAAACAATTAGATGAATTACAAAGTTTACTGAAGGAGCATG
ATTGTCCAAAACAGTTACCCTTCTCTGGTAGCAATGCTTGAAGAATGGTC
GAGAAGGAATTGGATTTTGAGAAGTGTGGATCCCATACGCGGATTTAGAA
TAGAGATTGATCATCATGATCAAAAGTCCCCAACATTAGAGCAG Run BLAST on NCBI transcript from alignment at sc0000067:556623..558829- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006533 ID=TCONS_00006533|Name=TCONS_00006533|organism=Clytia hemisphaerica|type=transcript|length=2207bp|location=Sequence derived from alignment at sc0000067:556623..558829- (Clytia hemisphaerica)
TTTTTTGATTCATAATGGCAGTCGGGATTATAATGAATTCGAACATGGCT
AATCGCGGAGAGAGTTCATCTTCATCCTCAACGAACCCTTACGACCGCTC
GCGTTTTACGCTCGATTTATCCTCGGCAGGCCCGAGCACAAGTCGGCTCC
GACATTGGGATATGTCGCCGACCGACGCCTCACCCGTTGAGGTAGTGAAA
TCTTTTGAGATTACCTTTTTACGGAATTGCTTATGCGGCACTTAAGTATT
TATCTTTAACTAACACGTTAATTGATTTCGGATTTGCTGATCACGCTATT
TTCGTTTTCACACCTCTATGTTATTATTTTCATTTCGAAAAGAATTATAA
ACTTTAATTTGATACAAAATTATAGGTTTTCAACTTTTAATTAGCCGACT
TAATTGCTATCACCTCTCTCTTCATATCATGTTGCGATTTGTATTAAAAA
TTTATCAATGTCATTTTTGTCCTTGTCAGCACTTTGATTTGTTATCAACA
TCACTATTTCTTTGAATTCGGAAAAACATCATATATTCTAGTTTCGTGTA
TACAGACACAAATTTGATCAAGACAGGCATCAATAGGCATGCTTGACGCG
GACAAGGAATGAACATTAAACAAATAATATATTTTTCTTTCTCTTTACAG
GCACATCAAAACAATCCATCAATGCTCGCATCACCATCAATGAATATGCC
GATCCTATGCCGACCATACAACCCTTACTCACCAGTCTCGGCTATCCAAT
CAATGGCGTCGCCTTCACCCATGAACACTTACGCACATTCACCCGGCAAC
TCTTCCACCTACTCCGCATCTCCTCTCAATTCACCACAACAACATTTCAG
TCAAGAAGATCTTATGATGCGTTACCGTATGCAGCAACACCCGATGATGG
CGGCTCCCGGATACGGACCCCGTCCAGTTGCTCAACCGGCCAGCGAATAT
GCATACTACTATAACGAATATGGCATGAAACGCCGAAAGCGTGATGAAGA
GGTAAGAACAATTTCTCGATTTTTTTGTTATTCATATGATTTCAAATACA
TATGGTTTTGATTGTCACGACTTTTGACAAACAGAAAATTTTGTTGTTGT
TTTTCGAAACAGTTTATGTGATGATTCATTCCTTCAAAAAGCTGAACACA
GCAAAAAAAAATTCTCTACTCAAAAGATTGAATCTCATATTTGATAAGGG
AAAATAGGAAAATCTAAATTTTAATATTAAGTATTTTCTTTCATTTTGTT
CAGCTTTCACACGAAGAACTCGAGAAACGACGTGTCCGACGTGAACGCAA
CAAGCAAGCAGCTTTACGTTGCCGCACACGAAGACGTGAACGAATCGACG
CTCTAGAGCAGGTAAATTACGTCATTTTCTTACTACCGTTTCCCTATTAT
CAGACGTCGGAAACGAAACTTTGAAATCTTTTCTAATCCGGTGAAATTTG
GCTTTTTATATCAGAAGGGAATATGGCATAAGAAATACACTGCTTACTTA
TTTGAGATTTGTGGTTAATTGACCTCAAGTACTGCGTGAAACCACATAAG
ATATAAAGGGACGCCCTAATTGTTATTTTAAAAGTTGATTTCAAACTTTT
TTTCGGGCATTGAATATGACTGAAGATTCAAAAAATCACTTTGGCTAAAA
TAACCGTTGAAAATTTCCCGTTTTGAAAAGTTTATTTGACCTTCTTACGT
AAAGCTTATCAAAGCAAACATTGGAAACATCTTTGGCCAACAAAAACTGT
ACAAATCAGCAAAAAAAACTTTCTTACGCCATATTCCTTTCAAGTATATA
GAACTCATAATTTTTGTCTACAATGTCTGTTTGAAAATTGTTTCAAAAAC
ATGTTCAATTGTGCAACTTAATGAATTTTGAGTAAGCAATTGATATTGGT
GAATTATCCATTATCCAGCATTGGACAAATTTCTTAATTTTCTTCAATTT
TTCTTTTCACCAGGAAACAACACAAATTGAAGAAGACAACACACGTGTGG
AGAAAGAAATTCGCGATCTCAAGAAACAATTAGATGAATTACAAAGTTTA
CTGAAGGAGCATGATTGTCCAAAACAGTTACCCTTCTCTGGTAGCAATGC
TTGAAGAATGGTCGAGAAGGAATTGGATTTTGAGAAGTGTGGATCCCATA
CGCGGATTTAGAATAGAGATTGATCATCATGATCAAAAGTCCCCAACATT
AGAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006533-exon-sc0000067-1575043694:558639..558829 | TCONS_00006533-exon-sc0000067-1575043694:558639..558829 | Clytia hemisphaerica | exon |
| TCONS_00006533-exon-sc0000067-1575043694:557829..558179 | TCONS_00006533-exon-sc0000067-1575043694:557829..558179 | Clytia hemisphaerica | exon |
| TCONS_00006533-exon-sc0000067-1575043694:557469..557576 | TCONS_00006533-exon-sc0000067-1575043694:557469..557576 | Clytia hemisphaerica | exon |
| TCONS_00006533-exon-sc0000067-1575043694:556623..556866 | TCONS_00006533-exon-sc0000067-1575043694:556623..556866 | Clytia hemisphaerica | exon |
| TCONS_00006533-exon-sc0000067-1510915933:558639..558829 | TCONS_00006533-exon-sc0000067-1510915933:558639..558829 | Clytia hemisphaerica | exon |
| TCONS_00006533-exon-sc0000067-1510915933:557829..558179 | TCONS_00006533-exon-sc0000067-1510915933:557829..558179 | Clytia hemisphaerica | exon |
| TCONS_00006533-exon-sc0000067-1510915933:557469..557576 | TCONS_00006533-exon-sc0000067-1510915933:557469..557576 | Clytia hemisphaerica | exon |
| TCONS_00006533-exon-sc0000067-1510915933:556623..556866 | TCONS_00006533-exon-sc0000067-1510915933:556623..556866 | Clytia hemisphaerica | exon |
| TCONS_00006533-exon-sc0000067-1491911889:558639..558829 | TCONS_00006533-exon-sc0000067-1491911889:558639..558829 | Clytia hemisphaerica | exon |
| TCONS_00006533-exon-sc0000067-1491911889:557829..558179 | TCONS_00006533-exon-sc0000067-1491911889:557829..558179 | Clytia hemisphaerica | exon |
| TCONS_00006533-exon-sc0000067-1491911889:557469..557576 | TCONS_00006533-exon-sc0000067-1491911889:557469..557576 | Clytia hemisphaerica | exon |
| TCONS_00006533-exon-sc0000067-1491911889:556623..556866 | TCONS_00006533-exon-sc0000067-1491911889:556623..556866 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:556623..558829 - |
Blast
The following BLAST results are available for this feature:
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