|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006525 ID=TCONS_00006525|Name=TCONS_00006525|organism=Clytia hemisphaerica|type=transcript|length=1519bp TCCTATCTCAAATTGCGATAGTTGGTGGAAATCACGCTTTAGTTTCCCTA TAAGTGAAACACCGAACCGAGTGTACCCAACAAACCATGGAAAACACATC ACTACCATCACCACCAGTTGGCTTTCAAACTAAACAACAGGAAGATGCTT TTATAGTAGACTGTTCCAACATGATTTGGTTCTATCCGAATCATCCATCA TACCAAATTTCACTTCGGTTGGCAATTTTCTTGAATACAATATTTTCCTT GTTATCAATTGTGGTGAATCTGAAGAATTGCCAACGTTTGTTAAGACACA AGGATGGAAAAGCACCTTCATCTAACATTGTCATCTTTTCAGGTTGTGTG ACGGACATGGTAACAGCTTTCATGATCCTCACCGTATGGAATGTGCAATC CATAATGGCGGTCAACCATCAATTCTCTTGTCCAGTCTCATTTTTCACTT ATCTCATTGTCATTGTTGCCGCCTTCATTATCTGCATGACAACCATATTA TTGATCGCTGACCGTTACCTGATCGTAACATGCCCTTTTCTTTACGAGGA ACACATTACGAAGAACGCCTCAACGTACGGGAAAATCATTGCTTATATTT TTATCATCGCTTTGATCCTCTCTGGCATCGGATTCGCTATCTCACCCCAA GTCTTGTATTTCATCATTACTGTCCCCTATATCGGCTGTCTTCTATGGGC TGTTTTTGTATATCCTGCGTTATTCTATGAACGGTTTTATTTAACCACAA CTTACACGTCCTACCAGTTAAAGGTTGGTTTACATGAACGACGAAATcac gaaaaattaacaaagtgTAGCTGCTTACATTCTTTCATGactgtttttct tttatctCCGCATCTAATTTTTACTTATGGCTGGTTTCAAAAGAATCAGC AGATTACCTCCTTAATGTTCCATACAGCTTTGTTATGGAGTTGGGTGATG ATTGCATTGAAGCTTGTTATCTCCGCCATCTCATTTAGCTTTGGAATCGA AGGTCGAGGTTTTAAGTGGAAGATTTTTAAACGAAAGCTGAGTAAGAGAC GAATTGATGACATTCAACTTAAGAAGCTAACAAATATTTGATGGAATTTC ATGGTTAGTGGATAATTCATTATGCATGATGATTTTTCAAAGAGAAGGCT TTATTCACTGATTTGAGGGGGTGGTTCTCCGACCCTTACATCCAATGACC ACTAAAACTAACCTCTGGTTAGTAAACACTTTTCCTTTTCTGCTGGTAAT TAGCTGATAGACTAAACAACTGTTACAATTTGAACTGACGTCAATCCGCC AAAACATTAAATTATCTACCATGAATTTCAAAGCAGGAAAATATAAGGAG GAATTTTTGGTCAAACAAACGGGAGAGGAGATTGTACTTGTtaatatttt aagaaatttgagAGAAGACAAAACATGGTGCTGGGTATCTGCGGATGGTA AGGGTAAGGGTTtatcacctttcaaagtctctctaagagtcgaaaaaatc aggaaaatttaaattagtc Run BLAST on NCBI protein sequence of TCONS_00006525-protein >TCONS_00006525-protein ID=TCONS_00006525-protein|Name=TCONS_00006525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MENTSLPSPPVGFQTKQQEDAFIVDCSNMIWFYPNHPSYQISLRLAIFLN TIFSLLSIVVNLKNCQRLLRHKDGKAPSSNIVIFSGCVTDMVTAFMILTV WNVQSIMAVNHQFSCPVSFFTYLIVIVAAFIICMTTILLIADRYLIVTCP FLYEEHITKNASTYGKIIAYIFIIALILSGIGFAISPQVLYFIITVPYIG CLLWAVFVYPALFYERFYLTTTYTSYQLKVGLHERRNHEKLTKCSCLHSF MTVFLLSPHLIFTYGWFQKNQQITSLMFHTALLWSWVMIALKLVISAISF SFGIEGRGFKWKIFKRKLSKRRIDDIQLKKLTNI Run BLAST on NCBI transcript from alignment at sc0000067:530271..536486- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006525 ID=TCONS_00006525|Name=TCONS_00006525|organism=Clytia hemisphaerica|type=transcript|length=6216bp|location=Sequence derived from alignment at sc0000067:530271..536486- (Clytia hemisphaerica) TCCTATCTCAAATTGCGATAGTTGGTGGAAATCACGCTTTAGTTTCCCTA
TAAGTAAGTATCGGTTCCAGCACGAATCTGTATTCTAGAAAAAACTTGAA
TATTAATGTCTGCAGTCTAGAGATCTAGTCAAATATTTTACCCCGAAGAA
ATTGCTCTCAATTTGTTCTTAGTTTTTTAGCCTTTTGTTCTTATAAAAAG
AGTGTAATTAACAATACAACAACAAAACGAAGGAAAAAACACAGTGTGGA
TGTGTAAGGACGCTGGTATTTGCCAAGAAAACAAACCACTAACGACCCAT
ATCCGTCGATAAATATAAACTAAAATGTGTAATAGACATTCCAAATCAAA
ACATTCATTTCATTAGAATTTTATGTCAGATATTCTTCAAAACATTTGCA
GTTGATACCTGATACTGTATTCACATCTTAGCACTTTAGAGGCGGAAATA
TGTTGCTATAAGGGCTATTAAAATGGTATTAAAAAAATTAAGCTTTTAAA
TACACTCAGTCATTCAGCTTTCAACACATTCTGTTCAGTGTTCTTAAACT
TGTTCTTAACATCTCAAGAAAATGTCTTGAATGGAAAACTTGTCAAACGG
AAATGTAGTTATTCGAAAAAACATGAATTTGGAATACCACAGATTCCGTT
TCTACTACATAATTATTGATCGGATTCTCCGCAAGAGAAACAATAGACAT
GAATTTCGTAATTTTTGATTAGTCTTCAGGTTGCAGTGGGTGGAGAATGA
AAGAGGGCTCTTTTTGTCTACACATTCCTTTAAAATAAAACAAAACTTTC
CTTCTTGTGTCTTGGTGGTCTACGGGATTATTTTGAGACTTCTTAAATTG
GGCCATTCCATTAAATTTCCATACACAGGGGCGTAACCTTTTCACATAAA
AAAGTGAAAAGATCCAAAATTTCTTCAAGAGTCGAAAACCAAGAATAGCC
AAAAATGTTGCGATTCTCTTTTTAAAAACGCGTTTACAAACTTGGTCTAT
GATTTCAGTATGCCCCAATTTTCAATTCACTCACTCAGATTTTAATCTGT
AACTTTCATCTGCAAATCAATATCAGCTTCATTTGGTATAGATAGGTTTA
TTTTAATTGACAGAAAGCGAACGCTAATTAGATAATTACTTTTATTGATG
AGCTCACTCGTAAGTCACATGACTGCTTCGAGACTTTTATTCAGGAAAAA
ATTAATGCCTTAAAAATGCAATTATGACACGACCCCCTGATCAATATTAA
CAAAATTATTCCAACTCGACGTAATTAATTAGGAGTTAATGATCAAGCTT
CACATAAATTATTACGGTCATTTCGGGTAGGTATAAAAATGTAATGAAGG
GGAGATATACATGGTTAATTAGCGTTTGTCCAGCTCCAGCAAGCAACTCA
CAGCTGTCTTTGAAGTCTAAGGACAATNAACACATTCTGTTCAGTGTTCT
TAAACTTGTTCTTAACATCTCAAGAAAATGTCTTGAATGGAAAACTTGTC
AAACGGAAATGTAGTTATTCAAAAAAACATGAATTTGGAATACCACAGAT
TCCGTTTCTACTAAATAATTATTGATCGGATTCTCCGCAAGAGAAACAAT
AGACATGAATTTCGTAATTTTTGATTAGTCTTCAGGTTGTAGTGGGTGGA
GAATGAGAGAGGGCTCTTTTTGTCTACACATTCCTTTAAAATAAAACAAA
ACTTTCCTTCTTGTGTCTTGGTGGTCTACGGGATTATTTTGAGACTTCTT
AAATTGGGCCATTCCATTAAATTTCCATACACGGGGGCGTAACCTTTTCA
CATAAAAAAGTGAAAAGATCCAAAATTTCTTCAAGAGTCGAAAACCAAGA
ATAGCCAAAAATGTTGCGATTCTCTTTTTAAAAACGCGTTTACAAACTTG
GTCTATGATTTCAGTATGCCCCAATTTTCAATTCACTCACTCAGATTTTA
ATCTGTAACTTTCATCTGCAAATCAATATCAGCTTCATTTGGTATAGATA
GGTTTATTTTAATTGACAGAAAGCGAACGCTAATTAGATAATTACTTTTA
TTGATGAGCTCACTCGTAAGTCACATGACTGCTTCGAGACTTTTATTCAG
GAAAAAATTAATGCCTTAAAAATGCAATTATGACACGACCCCCTGATCAA
TATTAACAAAATTATTCGAACTCGACGTAATTAATTAGGAGTTAATGATC
AAGCTTCACATAAATTATTACGGTCATTTCGGGTAGGTAAAAAAATGTAA
TAAAGGGGAGATATACATGGTTAAATAGCGTTTGTCCAGCTCCAGCAAGC
AACTCACAGCTGTCTTTGAAGTCTAAGGACAACCTATCATAGTTTGAAGC
TTATCTTCGAGTAAGAAGTGCCAGAATCATTCCTAGGGGTAGAGGTACTA
TCCGCTGAGGCTTGAAAATGAACCCAACGTAGGGCCTGAAATTCCAAATA
ATTTTAAGAAAACAGACATTTACAATCCTACCCTGTGATCATTGAAAGTA
TGTCTTATCCAATTCTAGCTGAAAGTCATTAGAACATTAGAAATATTTCT
TGGTAAAACAGTAAAACGACCATAAGAAGACAGATTTAACGAATGCAATT
AACCAAAACGAAACTGTTAAGTTTCTAAGTATTATAAAATAATTGATTTT
TGATTAAAATCTGAAATACCAGTCATCATATGATTGAAAGTGCCTTCTGT
GCAATTTGTTTATTGTTGTCATTTGTGGAAACTTTTAGTTTGGTGAATCA
TATTCTGGTATCTCTGATTCTTTCTTCAAGAGACCAAATAGATTCTCGGT
TGAGGTGTTCATCGGGCTTTCTATTTAATATCCATTCGGGGGAGTTGTAG
ATGTAGATGAAAATTTCCAAAAGGGTATCCACACATTTTTAAGAATTACC
ATATGATTTGGCTTGAAATGGTTCGTCCAACCCTGTATGGATATTAAAAC
CAAATAGGCCATCATTTTAGTGGTCAGTGCCACAGAGATAAAAAAGACGG
CTCCAATCAGAAAGAGTGGCGTGTATTTCTAGAGATAACGAATAACTTTC
CCCCCATGTCTAGAATACAGAAAGAGCATTTACCAATCAGCCCCAGCACT
TCAAGGGGAATAGGTCCGAGTTACGTAGGTCTGATCGACATCAAATGCAC
CAGTATCTTTGAGCGCCTGTGAGCCATCAATGGTCTAATTTTAGACCTTT
AACATCATTTGACCCCAGTGAGCTTGAAACCAGACCCTATTCGTGAAGCT
TTTAATGCAAACGTCGACGGGATTATTTGGCTGAGTTTTATGGCTGACTT
TTGACAATAATTCGGTAGATTTTTAAAAAATTTTCATAAGAGAATATTTT
TGCTTGTGCAATTGAAAATTTAACTCTATTTCTAATTTGTGGACTGAATT
CGCAAAAAACAGTAGACTAAAATCTAAGATAGACAAATATTTTATAAGAG
ATTTTTCCTTCACAATCATAAATTTAACCAGTTAACCCTAAGATATATAA
TTTATTGATAGAGGAAAATTCACTTTTTATTTAACAACGATCCCCACACA
AAAATTCTACTTCAAAAGTTAAACCTATAAAATTTTGTTATGCATAAATA
AAATAGTCGTTATGTAAAATCTAAAACACTATTGTAAAATAGAAGAGTTT
TTTCAATAATATTTTGGAGAAATTTTATTGAAAATATTTTGTATTAGTAG
GAGGGAGTGCTTAGTTTTTCAAAGAAATAGAAAAGCTCTTATGGTGGTGA
CTTAAAACAAAATTTCTCGAAAAAGGCTAAAGACACATAACATTGATAGG
CTTTTTGGTTGCGAAGGATAAACAGCAGTCTGATGAATCTTTTGGATAAT
TTCAATGATTATTTGTTATCACATCCATATGATCGCCTATCGGATTCAGA
AGATTCAATTTCAATTTACTTAGGGCAAGAATTGCTGGCGTGTAATAAAT
TATCTAAAAGGCAAGTAAACATGATCATTCTTATTTTGCAGTTTTTAATT
TTTAGCTCTATAAAAAAATGGTCATTGTTTTCAAAAGTTTCAAGAAATAC
CTTAAAGGAAATCATTTTTGCGAATTTTGTTGAATTTTGCTATAAAAAAA
GTCTACCTCTCCAAAATAAGCCAAGTCAAAATTTTCTATTAAGGTTTATG
ATTTTGTTATTTCTTCGATTCTTGTGAGATTTGGTTCCTATCTCGGCATT
TTTGAACACATGACAGAATATTTTTTTATGACAACCCATGATCTCAGAAT
ATTTTCCACAACCCTTCAGCACAGGTGAAACACCGAACCGAGTGTACCCA
ACAAACCATGGAAAACACATCACTACCATCACCACCAGTTGGCTTTCAAA
CTAAACAACAGGAAGATGCTTTTATAGTAGACTGTTCCAACATGATTTGG
TTCTATCCGAATCATCCATCATACCAAATTTCACTTCGGTTGGCAATTTT
CTTGAATACAATATTTTCCTTGTTATCAATTGTGGTGAATCTGAAGAATT
GCCAACGTTTGTTAAGACACAAGGATGGAAAAGCACCTTCATCTAACATT
GTCATCTTTTCAGGTGAGATATTGTTCATTCCCATGCCGAGGAAATAATT
TCTACGTCCAGAGAATGCCTTCAAAAAAGCTTGCAAATCTAAGGGATTGA
ATTTTTGTGAAAATATCCAGTTGGTGTCCAAAGTCGAACCCAGTTCCTTT
AATCACTTTTTTATGATTCTGGATAGCGCTCATTATTGTTCATCAGTAAA
ATTAAAAAGTAGTGGCTCTGGGTACAAGATTGAATTAATGTTTTAAGAAT
AAGCTGAAATCTAGTGGAGAACTCTGAAAACTTTTTGGCAAAGAACCGAG
AATGTACCTCAGAAATTTCCCAGAAAACCATGATATTTCTTAAGTGACCC
CTCAAATTGGGAGGTAATGTCTATTAAAATGAGTAATTTAAGTTTCTCAG
AAAAATAAACGATACGGAGAACAGTTGTAGAATCAGACTTGAGAAAGGCG
TATCAAGTTTTTTTTAAAGAATGAATTATTGTTTTTCAGGTTGTGTGACG
GACATGGTAACAGCTTTCATGATCCTCACCGTATGGAATGTGCAATCCAT
AATGGCGGTCAACCATCAATTCTCTTGTCCAGTCTCATTTTTCACTTATC
TCATTGTCATTGTTGCCGCCTTCATTATCTGCATGACAACCATATTATTG
ATCGCTGACCGTTACCTGATCGTAACATGCCCTTTTCTTTACGAGGAACA
CATTACGAAGAACGCCTCAACGTACGGGAAAATCATTGCTTATATTTTTA
TCATCGCTTTGATCCTCTCTGGCATCGGATTCGCTATCTCACCCCAAGTC
TTGTATTTCATCATTACTGTCCCCTATATCGGCTGTCTTCTATGGGCTGT
TTTTGTATATCCTGCGTTATTCTATGAACGGTTTTATTTAACCACAACTT
ACACGTCCTACCAGTTAAAGGTTGGTTTACATGAACGACGAAATCACGAA
AAATTAACAAAGTGTAGCTGCTTACATTCTTTCATGACTGTTTTTCTTTT
ATCTCCGCATCTAATTTTTACTTATGGCTGGTTTCAAAAGAATCAGCAGA
TTACCTCCTTAATGTTCCATACAGCTTTGTTATGGAGTTGGGTGATGATT
GCATTGAAGCTTGTTATCTCCGCCATCTCATTTAGCTTTGGAATCGAAGG
TCGAGGTTTTAAGTGGAAGATTTTTAAACGAAAGCTGAGTAAGAGACGAA
TTGATGACATTCAACTTAAGAAGCTAACAAATATTTGATGGAATTTCATG
GTTAGTGGATAATTCATTATGCATGATGATTTTTCAAAGAGAAGGCTTTA
TTCACTGATTTGAGGGGGTGGTTCTCCGACCCTTACATCCAATGACCACT
AAAACTAACCTCTGGTTAGTAAACACTTTTCCTTTTCTGCTGGTAATTAG
CTGATAGACTAAACAACTGTTACAATTTGAACTGACGTCAATCCGCCAAA
ACATTAAATTATCTACCATGAATTTCAAAGCAGGAAAATATAAGGAGGAA
TTTTTGGTCAAACAAACGGGAGAGGAGATTGTACTTGTTAATATTTTAAG
AAATTTGAGAGAAGACAAAACATGGTGCTGGGTATCTGCGGATGGTAAGG
GTAAGGGTTTATCACCTTTCAAAGTCTCTCTAAGAGTCGAAAAAATCAGG
AAAATTTAAATTAGTC Coding sequence (CDS) from alignment at sc0000067:530271..536486- >TCONS_00006525 ID=TCONS_00006525|Name=TCONS_00006525|organism=Clytia hemisphaerica|type=CDS|length=2010bp|location=Sequence derived from alignment at sc0000067:530271..536486- (Clytia hemisphaerica) GTTGTGTGACGGACATGGTAACAGCTTTCATGATCCTCACCGTATGGAAT GTGCAATCCATAATGGCGGTCAACCATCAATTCTCTTGTCCAGTCTCATT TTTCACTTATCTCATTGTCATTGTTGCCGCCTTCATTATCTGCATGACAA CCATATTATTGATCGCTGACCGTTACCTGATCGTAACATGCCCTTTTCTT TACGAGGAACACATTACGAAGAACGCCTCAACGTACGGGAAAATCATTGC TTATATTTTTATCATCGCTTTGATCCTCTCTGGCATCGGATTCGCTATCT CACCCCAAGTCTTGTATTTCATCATTACTGTCCCCTATATCGGCTGTCTT CTATGGGCTGTTTTTGTATATCCTGCGTTATTCTATGAACGGTTTTATTT AACCACAACTTACACGTCCTACCAGTTAAAGGTTGGTTTACATGAACGAC GAAATCACGAAAAATTAACAAAGTGTAGCTGCTTACATTCTTTCATGACT GTTTTTCTTTTATCTCCGCATCTAATTTTTACTTATGGCTGGTTTCAAAA GAATCAGCAGATTACCTCCTTAATGTTCCATACAGCTTTGTTATGGAGTT GGGTGATGATTGCATTGAAGCTTGTTATCTCCGCCATCTCATTTAGCTTT GGAATCGAAGGTCGAGGTTTTAAGTGGAAGATTTTTAAACGAAAGCTGAG TAAGAGACGAATTGATGACATTCAACTTAAGAAGCTAACAAATATTTGAA TGGAAAACACATCACTACCATCACCACCAGTTGGCTTTCAAACTAAACAA CAGGAAGATGCTTTTATAGTAGACTGTTCCAACATGATTTGGTTCTATCC GAATCATCCATCATACCAAATTTCACTTCGGTTGGCAATTTTCTTGAATA CAATATTTTCCTTGTTATCAATTGTGGTGAATCTGAAGAATTGCCAACGT TTGTTAAGACACAAGGATGGAAAAGCACCTTCATCTAACATTGTCATCTT TTCAGGTTGTGTGACGGACATGGTAACAGCTTTCATGATCCTCACCGTAT GGAATGTGCAATCCATAATGGCGGTCAACCATCAATTCTCTTGTCCAGTC TCATTTTTCACTTATCTCATTGTCATTGTTGCCGCCTTCATTATCTGCAT GACAACCATATTATTGATCGCTGACCGTTACCTGATCGTAACATGCCCTT TTCTTTACGAGGAACACATTACGAAGAACGCCTCAACGTACGGGAAAATC ATTGCTTATATTTTTATCATCGCTTTGATCCTCTCTGGCATCGGATTCGC TATCTCACCCCAAGTCTTGTATTTCATCATTACTGTCCCCTATATCGGCT GTCTTCTATGGGCTGTTTTTGTATATCCTGCGTTATTCTATGAACGGTTT TATTTAACCACAACTTACACGTCCTACCAGTTAAAGGTTGGTTTACATGA ACGACGAAATCACGAAAAATTAACAAAGTGTAGCTGCTTACATTCTTTCA TGACTGTTTTTCTTTTATCTCCGCATCTAATTTTTACTTATGGCTGGTTT CAAAAGAATCAGCAGATTACCTCCTTAATGTTCCATACAGCTTTGTTATG GAGTTGGGTGATGATTGCATTGAAGCTTGTTATCTCCGCCATCTCATTTA GCTTTGGAATCGAAGGTCGAGGTTTTAAGTGGAAGATTTTTAAACGAAAG CTGAGTAAGAGACGAATTGATGACATTCAACTTAAGAAGCTAACAAATAT TTGAATGGAAAACACATCACTACCATCACCACCAGTTGGCTTTCAAACTA AACAACAGGAAGATGCTTTTATAGTAGACTGTTCCAACATGATTTGGTTC TATCCGAATCATCCATCATACCAAATTTCACTTCGGTTGGCAATTTTCTT GAATACAATATTTTCCTTGTTATCAATTGTGGTGAATCTGAAGAATTGCC AACGTTTGTTAAGACACAAGGATGGAAAAGCACCTTCATCTAACATTGTC ATCTTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00006525-exon-sc0000067-1575043694:536434..536486 | TCONS_00006525-exon-sc0000067-1575043694:536434..536486 | Clytia hemisphaerica | exon |
TCONS_00006525-exon-sc0000067-1575043694:531924..532212 | TCONS_00006525-exon-sc0000067-1575043694:531924..532212 | Clytia hemisphaerica | exon |
TCONS_00006525-exon-sc0000067-1575043694:530271..531447 | TCONS_00006525-exon-sc0000067-1575043694:530271..531447 | Clytia hemisphaerica | exon |
TCONS_00006525-exon-sc0000067-1510915933:536434..536486 | TCONS_00006525-exon-sc0000067-1510915933:536434..536486 | Clytia hemisphaerica | exon |
TCONS_00006525-exon-sc0000067-1510915933:531924..532212 | TCONS_00006525-exon-sc0000067-1510915933:531924..532212 | Clytia hemisphaerica | exon |
TCONS_00006525-exon-sc0000067-1510915933:530271..531447 | TCONS_00006525-exon-sc0000067-1510915933:530271..531447 | Clytia hemisphaerica | exon |
TCONS_00006525-exon-sc0000067-1491911889:536434..536486 | TCONS_00006525-exon-sc0000067-1491911889:536434..536486 | Clytia hemisphaerica | exon |
TCONS_00006525-exon-sc0000067-1491911889:531924..532212 | TCONS_00006525-exon-sc0000067-1491911889:531924..532212 | Clytia hemisphaerica | exon |
TCONS_00006525-exon-sc0000067-1491911889:530271..531447 | TCONS_00006525-exon-sc0000067-1491911889:530271..531447 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000067 | supercontig | sc0000067:530271..536486 - |
Blast
The following BLAST results are available for this feature:
|