TCONS_00006523 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006523
Unique NameTCONS_00006523
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006523 ID=TCONS_00006523|Name=TCONS_00006523|organism=Clytia hemisphaerica|type=transcript|length=1560bp
TATCACATCCATATGATCGCCTATCGGATTCAGaagattcaatttcaatt
tacttAGGGCAAGAATTGCTGGCGTGTAATAAATTATCTAAAAGGTGAAA
CACCGAACCGAGTGTACCCAACAAACCATGGAAAACACATCACTACCATC
ACCACCAGTTGGCTTTCAAACTAAACAACAGGAAGATGCTTTTATAGTAG
ACTGTTCCAACATGATTTGGTTCTATCCGAATCATCCATCATACCAAATT
TCACTTCGGTTGGCAATTTTCTTGAATACAATATTTTCCTTGTTATCAAT
TGTGGTGAATCTGAAGAATTGCCAACGTTTGTTAAGACACAAGGATGGAA
AAGCACCTTCATCTAACATTGTCATCTTTTCAGGTTGTGTGACGGACATG
GTAACAGCTTTCATGATCCTCACCGTATGGAATGTGCAATCCATAATGGC
GGTCAACCATCAATTCTCTTGTCCAGTCTCATTTTTCACTTATCTCATTG
TCATTGTTGCCGCCTTCATTATCTGCATGACAACCATATTATTGATCGCT
GACCGTTACCTGATCGTAACATGCCCTTTTCTTTACGAGGAACACATTAC
GAAGAACGCCTCAACGTACGGGAAAATCATTGCTTATATTTTTATCATCG
CTTTGATCCTCTCTGGCATCGGATTCGCTATCTCACCCCAAGTCTTGTAT
TTCATCATTACTGTCCCCTATATCGGCTGTCTTCTATGGGCTGTTTTTGT
ATATCCTGCGTTATTCTATGAACGGTTTTATTTAACCACAACTTACACGT
CCTACCAGTTAAAGGTTGGTTTACATGAACGACGAAATcacgaaaaatta
acaaagtgTAGCTGCTTACATTCTTTCATGactgtttttcttttatctCC
GCATCTAATTTTTACTTATGGCTGGTTTCAAAAGAATCAGCAGATTACCT
CCTTAATGTTCCATACAGCTTTGTTATGGAGTTGGGTGATGATTGCATTG
AAGCTTGTTATCTCCGCCATCTCATTTAGCTTTGGAATCGAAGGTCGAGG
TTTTAAGTGGAAGATTTTTAAACGAAAGCTGAGTAAGAGACGAATTGATG
ACATTCAACTTAAGAAGCTAACAAATATTTGATGGAATTTCATGGTTAGT
GGATAATTCATTATGCATGATGATTTTTCAAAGAGAAGGCTTTATTCACT
GATTTGAGGGGGTGGTTCTCCGACCCTTACATCCAATGACCACTAAAACT
AACCTCTGGTTAGTAAACACTTTTCCTTTTCTGCTGGTAATTAGCTGATA
GACTAAACAACTGTTACAATTTGAACTGACGTCAATCCGCCAAAACATTA
AATTATCTACCATGAATTTCAAAGCAGGAAAATATAAGGAGGAATTTTTG
GTCAAACAAACGGGAGAGGAGATTGTACTTGTtaatattttaagaaattt
gagAGAAGACAAAACATGGTGCTGGGTATCTGCGGATGGTAAGGGTAAGG
GTTtatcacctttcaaagtctctctaagagtcgaaaaaatcaggaaaatt
taaattagtc
Run BLAST on NCBI

transcript from alignment at sc0000067:530271..532620-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006523 ID=TCONS_00006523|Name=TCONS_00006523|organism=Clytia hemisphaerica|type=transcript|length=2350bp|location=Sequence derived from alignment at sc0000067:530271..532620- (Clytia hemisphaerica)
TATCACATCCATATGATCGCCTATCGGATTCAGAAGATTCAATTTCAATT
TACTTAGGGCAAGAATTGCTGGCGTGTAATAAATTATCTAAAAGGCAAGT
AAACATGATCATTCTTATTTTGCAGTTTTTAATTTTTAGCTCTATAAAAA
AATGGTCATTGTTTTCAAAAGTTTCAAGAAATACCTTAAAGGAAATCATT
TTTGCGAATTTTGTTGAATTTTGCTATAAAAAAAGTCTACCTCTCCAAAA
TAAGCCAAGTCAAAATTTTCTATTAAGGTTTATGATTTTGTTATTTCTTC
GATTCTTGTGAGATTTGGTTCCTATCTCGGCATTTTTGAACACATGACAG
AATATTTTTTTATGACAACCCATGATCTCAGAATATTTTCCACAACCCTT
CAGCACAGGTGAAACACCGAACCGAGTGTACCCAACAAACCATGGAAAAC
ACATCACTACCATCACCACCAGTTGGCTTTCAAACTAAACAACAGGAAGA
TGCTTTTATAGTAGACTGTTCCAACATGATTTGGTTCTATCCGAATCATC
CATCATACCAAATTTCACTTCGGTTGGCAATTTTCTTGAATACAATATTT
TCCTTGTTATCAATTGTGGTGAATCTGAAGAATTGCCAACGTTTGTTAAG
ACACAAGGATGGAAAAGCACCTTCATCTAACATTGTCATCTTTTCAGGTG
AGATATTGTTCATTCCCATGCCGAGGAAATAATTTCTACGTCCAGAGAAT
GCCTTCAAAAAAGCTTGCAAATCTAAGGGATTGAATTTTTGTGAAAATAT
CCAGTTGGTGTCCAAAGTCGAACCCAGTTCCTTTAATCACTTTTTTATGA
TTCTGGATAGCGCTCATTATTGTTCATCAGTAAAATTAAAAAGTAGTGGC
TCTGGGTACAAGATTGAATTAATGTTTTAAGAATAAGCTGAAATCTAGTG
GAGAACTCTGAAAACTTTTTGGCAAAGAACCGAGAATGTACCTCAGAAAT
TTCCCAGAAAACCATGATATTTCTTAAGTGACCCCTCAAATTGGGAGGTA
ATGTCTATTAAAATGAGTAATTTAAGTTTCTCAGAAAAATAAACGATACG
GAGAACAGTTGTAGAATCAGACTTGAGAAAGGCGTATCAAGTTTTTTTTA
AAGAATGAATTATTGTTTTTCAGGTTGTGTGACGGACATGGTAACAGCTT
TCATGATCCTCACCGTATGGAATGTGCAATCCATAATGGCGGTCAACCAT
CAATTCTCTTGTCCAGTCTCATTTTTCACTTATCTCATTGTCATTGTTGC
CGCCTTCATTATCTGCATGACAACCATATTATTGATCGCTGACCGTTACC
TGATCGTAACATGCCCTTTTCTTTACGAGGAACACATTACGAAGAACGCC
TCAACGTACGGGAAAATCATTGCTTATATTTTTATCATCGCTTTGATCCT
CTCTGGCATCGGATTCGCTATCTCACCCCAAGTCTTGTATTTCATCATTA
CTGTCCCCTATATCGGCTGTCTTCTATGGGCTGTTTTTGTATATCCTGCG
TTATTCTATGAACGGTTTTATTTAACCACAACTTACACGTCCTACCAGTT
AAAGGTTGGTTTACATGAACGACGAAATCACGAAAAATTAACAAAGTGTA
GCTGCTTACATTCTTTCATGACTGTTTTTCTTTTATCTCCGCATCTAATT
TTTACTTATGGCTGGTTTCAAAAGAATCAGCAGATTACCTCCTTAATGTT
CCATACAGCTTTGTTATGGAGTTGGGTGATGATTGCATTGAAGCTTGTTA
TCTCCGCCATCTCATTTAGCTTTGGAATCGAAGGTCGAGGTTTTAAGTGG
AAGATTTTTAAACGAAAGCTGAGTAAGAGACGAATTGATGACATTCAACT
TAAGAAGCTAACAAATATTTGATGGAATTTCATGGTTAGTGGATAATTCA
TTATGCATGATGATTTTTCAAAGAGAAGGCTTTATTCACTGATTTGAGGG
GGTGGTTCTCCGACCCTTACATCCAATGACCACTAAAACTAACCTCTGGT
TAGTAAACACTTTTCCTTTTCTGCTGGTAATTAGCTGATAGACTAAACAA
CTGTTACAATTTGAACTGACGTCAATCCGCCAAAACATTAAATTATCTAC
CATGAATTTCAAAGCAGGAAAATATAAGGAGGAATTTTTGGTCAAACAAA
CGGGAGAGGAGATTGTACTTGTTAATATTTTAAGAAATTTGAGAGAAGAC
AAAACATGGTGCTGGGTATCTGCGGATGGTAAGGGTAAGGGTTTATCACC
TTTCAAAGTCTCTCTAAGAGTCGAAAAAATCAGGAAAATTTAAATTAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003692XLOC_003692Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006523-exon-sc0000067-1575043694:532527..532620TCONS_00006523-exon-sc0000067-1575043694:532527..532620Clytia hemisphaericaexon
TCONS_00006523-exon-sc0000067-1575043694:531924..532212TCONS_00006523-exon-sc0000067-1575043694:531924..532212Clytia hemisphaericaexon
TCONS_00006523-exon-sc0000067-1575043694:530271..531447TCONS_00006523-exon-sc0000067-1575043694:530271..531447Clytia hemisphaericaexon
TCONS_00006523-exon-sc0000067-1510915933:532527..532620TCONS_00006523-exon-sc0000067-1510915933:532527..532620Clytia hemisphaericaexon
TCONS_00006523-exon-sc0000067-1510915933:531924..532212TCONS_00006523-exon-sc0000067-1510915933:531924..532212Clytia hemisphaericaexon
TCONS_00006523-exon-sc0000067-1510915933:530271..531447TCONS_00006523-exon-sc0000067-1510915933:530271..531447Clytia hemisphaericaexon
TCONS_00006523-exon-sc0000067-1491911889:532527..532620TCONS_00006523-exon-sc0000067-1491911889:532527..532620Clytia hemisphaericaexon
TCONS_00006523-exon-sc0000067-1491911889:531924..532212TCONS_00006523-exon-sc0000067-1491911889:531924..532212Clytia hemisphaericaexon
TCONS_00006523-exon-sc0000067-1491911889:530271..531447TCONS_00006523-exon-sc0000067-1491911889:530271..531447Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:530271..532620 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.90031	1.25768e-08	0	0.779455	0	0	0	0	0.83942	0	0	0.317928	0	0	0.554612	0.093215	0.747576	0.675896	0.260764	0	0.591564	1.19013e-07	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006523 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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