TCONS_00006475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006475
Unique NameTCONS_00006475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006475 ID=TCONS_00006475|Name=TCONS_00006475|organism=Clytia hemisphaerica|type=transcript|length=1657bp
ATTGAGCATAAGAAGTGTTTGTAAGTGTTTGATCAATTACAGTTTGATCG
CAAATTTCCGATCAAATGTTTCGAGGAGTTGGTTTCTATTCCCATTGCGA
TAAAGCTTTTATATAGACTGAAACAAGGAAGTTATGTATAGAAACCAGGT
CATATATTTATAGTTCCAAAATACGGCGACAGAACTCGAAATCtcgaaat
tcttttcaaaacaaatatggcgacCGGAATGGCAGAGAGACACGTTGCTC
ACatcttattttttgtatttcacTGCCTCCTTTTGGCATATGCTGAAGAA
GGAAGGCACACTAGATTTGAATATAAACAGAGTTTCAAGGGACCTCATCT
TGTCAACAAACAGGGCAACATTCCCTTCTGGACGTACTATGGAAGTGCTA
TTCCAAGTGATGAGCAAGTTCGTGTTACACCATCACTGAAAGACCAAAGA
GGAGGATTATGggccaaaaccaaaacaaatgcTCCTTTCTGGGAAATAGA
AGTCTTCTTCAAAGTGTCAGGAAGGGGGAGAGTTGGAGGAGATGGTCTGG
CTGTGTGGTTCACCAAAGACCAAGGAACAACTGGTCCAGTTTTCGGAAGT
TCAGACCACTGGACTGGAATGGGATTATTCTTTGACTCATTTGATAATGA
TGGAGagCAAAACAATCCTTATGTTATGGTGATGTTGAACGATGGGACCA
AAACTTATGATCATTTCAAAGATGGAAGCAACCAACAACTAGGAGGCTGC
ATGAGAGATTTTAGAAATCGACCACACGCCATCCGCGCTAAAGTCCGATA
TTACAATAATGTTTTAACGGTGTTTTACCATAATGGTATGTCAGAGAAGA
GTGAAGATTATGAACTTTGTATGAGGGCAGAAAATGTGGAACTACCAAAA
GAAGGATTCTTTGGTGTCACAGCAGCTACTGGTGGCCTCGCTGatgATCA
TGATGTTATCAAGTTTCTTACACACAGTTTGACTCCACCACTCTCTGAAG
AAGAAAAGAAGAAGATGATTTCAGAAGACCAACGGAAGAAATACGAAGAG
CAGTATGGAGAATTTACTCATAAATtggaagaaaagaaaacagaatTCCA
AAAAGAACACCCTGAGAAACAAGTACAGGAAGAAAAGTTTGAATCAGTGT
ACGAGCGAGACGTTCGTCTCATTTACGAAGGACAAAACTCTNTATAGAGA
GCACACTGTATTACATCATTTTGATGCTAAAAAATTACTTTTGGGGGAAA
TGATCGATCAGGATTTTTTGCTGGACATTTTTTTCAttgagaaaatttga
attttgtgtTTCAATGTTGAGGTGTAATGTTTTATTTCTGCAATTATAGA
AGTTTATGTAAAAAAAGTGCACTTGATTTCAAATTCCGGCAGCAAATTTC
CTCATCACTCATTTTAGCTAATATAGTTTTCACGAAAAatctaatctgta
aaattttaTAACATATTATAGCTTTAAATACAGTCacattgtcaaaatat
tttgatattttattttctttgatatAATATTCTTGTAGGGATTTGAAAGA
TTTGTTCATATTTTAATGAATAGATATTATCATAggtagatttttatttt
tctgttttaattttttttgtgaatggtgaagtaaagaatttttaagaatc
tgaataa
Run BLAST on NCBI

transcript from alignment at sc0000067:60759..70443-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006475 ID=TCONS_00006475|Name=TCONS_00006475|organism=Clytia hemisphaerica|type=transcript|length=9685bp|location=Sequence derived from alignment at sc0000067:60759..70443- (Clytia hemisphaerica)
ATTGAGCATAAGAAGTGTTTGTAAGTGTTTGATCAATTACAGTTTGATCG
CAAATTTCCGATCAAATGTTTCGAGGAGTTGGTTTCTATTCCCATTGCGA
TAAAGCTTTTATATAGACTGAAACAAGGAAGTTATGTATAGAAACCAGGT
CATATATTTATAGTTCCAAAATACGGCGACAGAACTCGAAATCTCGAAAT
TCTTTTCAAAACAAATATGGCGACCGGAATGGCAGAGAGACACGTTGCTC
ACATCTTATTTTTTGTATTTCACTGCCTCCTTTTGGCATATGCTGAAGAA
GGAAGGCACACTAGATTTGAATATAAACAGAGTTTCAAGGGACCTCATCT
TGTCAACAAACAGGGCAACATTCCCTTCTGGACGTACTATGGAAGTAAGA
TAAATTTTCATTATTTTTATGTATTTAACATTGATCATTGAGTGATGGGA
TATGTAATCTGGTGATGGGGCTGATTCATAGCTGTGTATTAGTAGAGGGT
TATTTGTGAGCATTAAATCCAGTGTANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGGTTTCAGATA
GTCTTTTTGCTCAGGTACTTGTAGAAAAGACAAGGTATCTTCTAAAATAG
ATTTGGTAAATCCGTTGAAATCCTTCCTCAAACGATCAAGGTCCTTTCCA
TATTGGTAGGTTTTGATACATCTCTTGATGTTGTCGGTAGGAGCTAGTAG
GCAGAGTTAGTAACTATTTGATTTTATACAATTTAGTTGTCTTAACTGAT
GGAGCTATTATAATGATTTAAATGAATACAGGTAGACAGGAAATAAAAGC
TTATCACCTTTTAATAGTTTAATAGTCATCTGAACTCTCATCTAATTAGG
TAGGCAAACAACAAGAATAGATTTTAGATGGGTAGGATTACACATTTAAA
ACCTCTTTGATAACAAAAGTACATTAATTAAAGTTTAATGTTAACACAAT
CATCAGATGTATATACTGAATGATTAAAAATCTCTTATTTTATGAAGTCT
ACAAAGTGATTTTAAATAATAAAAGAGGTCATTTTTAAAAAGCATTAAAA
ACATTAGAAATATTTTTGCGAGAAATCATATTGTTGAAATATTGCATGAG
ACAAAGTCAAGATACCTGGATCTCACGCTCAATGCATGAGAGTTGGTTAA
CTTTGTGCAACCCCCTTTTAATCCTGACATCAACTTCTTTGCTTTAGGGA
AAAATGGGCAGAATGGCTTTTTGGACCTACCTGGAGGTCCTATAAATTAA
CCTGTGTTCGTCTGTCCGTCCGTCCGTCCGTCTGTTACCAACTTTTCTCA
GGATTGAATCATAGGAATCTTTTGATTTTTGGTACAAAGGCGCAAGATGG
TAGTGGCCAAAATGTGACGGAGCCCGATTTTCGAAAAAAAAAAATTTGGG
CCAAATTTGGGCGAAAAAACAGCTAAAAAACGGATTCAAAAAATTGGATC
ATTAATTTTTTCTGATTTTTTGCATGAAAGTAGGCTAACATCATTGGTAA
AAGATGGCTCAAGCAGATTTTTGCAAAAAAATTTTGTTGGCTCAAAAAAC
GCATGTTTATCTATAAGAATCACTATTAATAAGCATATATCAATGTTCTT
AGTCAAATTACTCAATTTTTTATGAGATAGATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCTTTTGAAGAATATGTGTGTTTAGACATGAAATTTTGGTTGCTTGGCGT
GTTTTTATAGAAAAACTGGCCAAATTTGATATTTTTCTATAAGCACATTA
GTAATTACTTAGGTATTAGCTTTTCTCGAGATTGGCTCTTTCATTCTTTA
TGATTTTTTGCAAAAAGATGCACATAACTATGAACCCTTGAATGTGACGG
AGCTCGATTTTTGGAGAAAAAAAATTTTGGGTAAATTTCAGCTACAAAAC
GGCTAAAAAAGGGTTTTTTGGACTATGTGAAATATTGGATCATTGTATTT
TTCTGATTTTTTGCATGAAAGTAGGTAAAAGATGGCTCAGGCAGATTTTT
GTAAAAAAAAGAATTTTTCAACTCAAAAAACGCATCTTTATCTATAAGAA
TCACTATTAAAAAGCATACGTCAATGATGTTAGCCAAATTACCCAATTCT
TTAATGAGATAGATGTTTTTTTTGCTCACAAAGTCTTGAATATGAAAGAA
TATTTCAAGAGCATGAAATTTTGGTTTCTAAACGTTTTTTTTATAAGAAA
CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTGTGTTCTGAATGATTGTTTACAGTCATGCTGACGTA
GATATCAATTATATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTA
TCACTTGTTTTTTGCTAAATAAGTAAATAAAATATTTTATACTCATAATT
TATTGTTCTACAGAAAGGTGATGGAAAAGAAAGGTTGTTGACATAAGACC
AACAAACTCCTCAGGACTAGTAACTAGATTAGAATGGCCTCTTTATTCTT
TTTCTTTACGTAGGAAGGACGTGATACCATTTTTAATCCAAAAAATTAAA
CATTATGTAACTGCTACAAAAGCATTACATAATTTTAGTGTCAGGATAAC
CTAATATCAATATTTTACCATTCAATTTGTAGCTTCATTGATTGCTAAGA
TTATGTAATGTTTTCCGATTTAAAGAGCTTTGTATCCTGCAAAAGGTTTT
TTTTGGTGCACCTGGTAGCATTTTCCATGTGTAAGCCAGGAAATTTTTTG
GAAAACATCATGAATTAAACAATATTAGAAAATGTGGGGACAGTGGGAGA
AACCCTTGAAAAAGTATAAGAATTTGGGAGAAATTTTTAATGTGGTTGAA
TGAATTGAAAGTGCTGAAACGGCAGAGTCTCCCATCCAATGGGAAAAATT
GACAGCTATGGTAAAGTCTTGGCGCGATTCTTTGTTGCAGCACACAAAAA
GTTAAAGGGCTCAAGTTAGAACAAATTTTCACTGAGACCGCCTGTAGTGA
TTGTTAATTTCTTGACTTTTCCTACCAGTAGTGTCCACCCAAAAGGTGCT
CCATGAAGTATAAATCTTGAGCGGAGTAGATGAAAATCCCATTTTAGTGT
AGATAGTTGAGAATTTGCATTGAGGGAATGGTCACTCAAAAAAACCATGT
AAGGAAGTTTGTCAAGTTGGGTGCAATAGCTCTTCTAACCTGTAAGGCTT
GGGGCAAAAAAAAAACAATGCAGAAAATAAGGGCCCACTCAAAGGGGTAA
AAAAATGGTGGAAAGTACTCTTTAAAAGTTTCTTGTTTGTAACAGGTTAA
AAACAGCCCAAACTTATGGAAAATGGCCTAAGAGGTTTACTCGTTTTTCT
CCAGGTCCCTTGAAACCTTTTTCATTTTTTTTCCAAAATATTAAACTACT
TGGCATGATTCTTGAGTACTTTGTCAAGTTGTTGTTTCAGATTAAGATTA
GATTAGACCATATTCATGTGTTTCAGGTGCTATTCCAAGTGATGAGCAAG
TTCGTGTTACACCATCACTGAAAGACCAAAGAGGAGGATTATGGGCCAAA
ACCAAAACAAATGCTCCTTTCTGGGAAATAGAAGTCTTCTTCAAAGTGTC
AGGAAGGGGGAGAGTTGGAGGAGATGGTCTGGTGAGTTATTGAGACCTTT
TTCGGTATGTTGCTGAAATTCTGTTGACAGAGGGACTTAACAGCTAGAAG
CTAACTCAATTTTTATAATCATTGAACTATTCATTCACCTTGCCAAATTT
TTTTGCAGGTCTACTAACAATTTCAAAATTCAGGTTTCCCTTGATTACGC
AAGCATTTTGACTTTTATAAAATCACTTAATTTTTAGGCTGTGTGGTTCA
CCAAAGACCAAGGAACAACTGGTCCAGTTTTCGGAAGTTCAGACCACTGG
ACTGGAATGGGATTATTCTTTGACTCATTTGATAATGATGGAGAGGTAAA
ATTTTCAATAAAGAATAAGAAATTATTTCAAATTTTCAGATGTCTACGTA
CTTGGCTATAATTTTATAGACAGCTCCAGCTTTGTAAAGCTTCACTGTTG
GTTATGGTATTCCATTGTCTGCATCACGGCAAATAAAACTTACTTACACA
TTATGTATTAAAGATTCAAAAAATGATGAGTTATTAGTAACATGCATAAT
AACTTCAGGATGCTTTCAAAATTAACTTCACCGTTTATTCAAAAAATAAT
ATGAATCTTATAAAAGATTACAATGAATTTTCATTACTTTATTGAGATGC
TGATTAAAAGGTGTTTGATTATTTTTATAAAAACATACTGTTACATTTTT
AGCAAAACAATCCTTATGTTATGGTGATGTTGAACGATGGGACCAAAACT
TATGATCATTTCAAGTAAGATAACTTAACTTGAGCACATTTTCCTTATGA
GCCAGTCGCTATAACTCGAATTTGCCATAACTAGAAGAAATTTTTGTTTT
TTCTTTCTTGTCTCGTTTCTTGAGTTGTGGACACTCTTTTCATATCACCT
TTTCACTTTTTTCTCACAAAGGAGTTCAATGTTCTTTTTGTTTAGAGATG
GAAGCAACCAACAACTAGGAGGCTGCATGAGAGATTTTAGAAATCGACCA
CACGCCATCCGCGCTAAAGTCCGATATTACAATAATGTTTTAACGGTAAG
TTTAGAGTTTTTCTTTCATTTAGAGGGTTTAAATTTCTGTTAAAGTTTTT
AAAAATGCAACAAATTGAGAAAAATGAGATGCTATATTCGAAAATTGTTT
TCCTTGATTTTTAGGTGTTTTACCATAATGGTATGTCAGAGAAGAGTGAA
GATTATGAACTTTGTATGAGGGCAGAAAATGTGGAACTACCAAAAGAAGG
ATTCTTTGGTGTCACAGCAGCTACTGGTGGCCTCGCTGGTAAGAACCTAC
CAAATAGTTGATAAATGCGTTTTGATAATGGTGGGAGAGACTTAATGCCA
ACTGTAAAAGTAAATAATACTTGTAACCACACTCTAGATGACACAAAGGC
TTCCTTTTGTTTGCTTTCTAACTAACTGCTTCATCATCCCTTTGAACTCT
TTTTTTACTCGTTATCGTTGTTTTATAATGCTTGCTATATAGCTAAAATA
GATTTATTCTTTTTTATTTAGATGATCATGATGTTATCAAGTTTCTTACA
CACAGTTTGACTCCACCACTCTCTGAAGAAGTAAGATTCCCATTTCCGTT
TAATCCGTCAGATGGCTAAATAAATACGTTAATATGATTTGAGACCGAAA
CAGTATAATAATATTAATTCGATCAGAGTCAATAATAGTTCTGTTAGAAT
CATACTTAAAAATAAATGTGCCTAATGATCTTTTGGAATTTTTGTTGTAT
AGGAAAAGAAAAAGTTGATTTCAGAAGACCAACGGAAGAAATACGAAGAG
CAGTATGGAGAATTTACTCATAAATTGGAAGAAAAGAAAACAGAATTCCA
AAAAGAACACCCTGAGAAACAAGTACAGGAAGAAAAGGTATTAATCCACT
TTCACTTTTCTAATTACCAGGGTCCACCATTTTTGTTTGCGATCGAAATC
TCAGAAACTAAAGACCGAGAAAAGCTGAGAAAAGCCGAATTTTTTTGGTA
AACTTAATATAGAGTTTTATGACATTTTTTTATCTAGCCACAATATAATT
ATTTTTCAACTTACCATTTGTCCTTTGGATGAATATTGTTATGTTCTATT
GATTTCTCTCTTTAGTTTGAATCAGTGTACGAGCGAGACATTCGTCTCAT
TTACGAAGGACAAAACTCCATGCATCAAATCATGAGAGGTTTACATTCCA
AGACTGGAGAATTGACAACGGAAATCAATAATTTACATTCCGCCGTCAAC
CAAAAGACGAGCGGTGGTGGAGGCTCCAGTGATGGACCAAGCCGCAATGA
TGTCAACAGATTAATCAACTTACAAAATGAAGTTCATACAGCTATAAGAG
ATTTACAGTAAGCAAGCCTTTCAATTTTAGAGTGATTCATCTATCACTCT
AGCTTATTATCTCAATATTTGACGATCCAGCTTTGGATTCAATGCTTGTT
ATGAGGAAAACAATAATTTATCAACCTTTTTGTTTTTTAAAAGCTTTTGC
TTACTTCCAAAAACCTTTTAAAGAGATGACATTAATAGTATTATGGTATC
ATTGAATTAAAGAAGGATTTATCTTGCTCGAAGAATTTATAGTTACCTGG
ATGGACTGTATGGAGACATAACATTGTGTAACAATTTTTTGCTTTGTAGA
TCCAGAAGTGGAAACACAGACGATCAAAGGAAATTGGAAAGAGTTGAACA
AAATATTCGAACCATTTTAGAAAATGTTGTTTTATTAGCTTCAAAGGTAT
AAAATCAAGTTTCGGTTTTCTATAATTTTTTCTAGACCTTACGTCAACAT
CTTCTTTTTGTTGTTTGATGATTAGAGATCGTCTCATTTTTTTCTTGATT
TAATCAAAAGGCTTGGAAGAAAATAAAATGTCCAGTCCTTTTGATCCTGT
TAATATGATATAAAATCACTTTTTCATTTCCAGATGAACGACAAAACGAA
TAAACAAGCCTCACAGCAGAATTGCCCGACCGTCACATGTTTATCCACCG
GTACTTTCATATTCATGATGTTTCTACAAATCGCCCTCATTGTCGGCTAT
TCAATGTATCAAAACTATCAACAACAACAAGCTAAAAAATTTTATTAGAA
ATATTTTTAAAATATACTCTTTTTTATAAATTGCATAGTTACCTTAGAGT
CTCCACAGCTCGAAGCTCCATAACTCTAATGTCTCCTTAACTAACGAGTT
ATCTGACCTGTTTAGCTGACCAACTGTTATAAACCAGTCTCCTNAGGAAG
GATTCTTTGGTGTCACAGCAGCTACTGGTGGCCTCGCTGGTAAGAACCTA
CCAAATAGTTGATAAATGCGTTTTGATAATGGTGGGAGAGACTTAATGCC
AACTGTAAAAGTAAATAATACTTGTAACCACACTCTAGATGACACAAAGG
CTTCCTTTTGTTTGCTTTCTAACTAACTGCTTCATCATCCCTTTGAACTC
TTTTTTTACTCGTTATCGTTGTTTTATAATGCTTGCTATATAGCTAAAAT
AGATTTATTCTTTTTTATTTAGATGATCATGATGTTATCAAGTTTCTTAC
ACACAGTTTGACTCCACCACTCTCTGAAGAAGTAAGATTCCAATTTCCGT
TTAATCTGTCAGATGGCTAAATAAATACGTTAATATGATTTGAGACCGAA
ACAGCAGAATAATATTAATTCGATCAGAGTCAATAATAGTTCTGTTAGAA
TCATACTTAAAAGTAAAAGGCTTAATGATCTTTTGAAATTTTTCTTGTAT
AGGAAAAGAAGAAGATGATTTCAGAAGACCAACGGAAGAAATACGAAGAG
CAGTATGGAGAATTTACTCATAAATTGGAAGAAAAGAAAACAGAATTCCA
AAAAGAACACCCTGAGAAACAAGTACAGGAAGAAAAGGTATTAATCCACT
TTCACTTTTCTAATTACCAGGGTCCACCATTTTTGTTTGCGATCGAAATC
TCAGAAACTAAAGACCGAGAAAAGCTGAGGAAAGCCGAATTTTTTTGGTA
AACTTAATATAGAGTTTTATGACATTTTCCTATCTAGCCACAATATAATT
CTTTTTCAACTTACCATTTGTCCTTTGGATGAATATTGTTATGTTCTATT
GCTTTCTCTCTTTAGTTTGAATCAGTGTACGAGCGAGACGTTCGTCTCAT
TTACGAAGGACAAAACTCTNTATAGAGAGCACACTGTATTACATCATTTT
GATGCTAAAAAATTACTTTTGGGGGAAATGATCGATCAGGATTTTTTGCT
GGACATTTTTTTCATTGAGAAAATTTGAATTTTGTGTTTCAATGTTGAGG
TGTAATGTTTTATTTCTGCAATTATAGAAGTTTATGTAAAAAAAGTGCAC
TTGATTTCAAATTCCGGCAGCAAATTTCCTCATCACTCATTTTAGCTAAT
ATAGTTTTCACGAAAAATCTAATCTGTAAAATTTTATAACATATTATAGC
TTTAAATACAGTCACATTGTCAAAATATTTTGATATTTTATTTTCTTTGA
TATAATATTCTTGTAGGGATTTGAAAGATTTGTTCATATTTTAATGAATA
GATATTATCATAGGTAGATTTTTATTTTTCTGTTTTAATTTTTTTTGTGA
ATGGTGAAGTAAAGAATTTTTAAGAATCTGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003679XLOC_003679Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006475-exon-sc0000067-1575043694:70050..70443TCONS_00006475-exon-sc0000067-1575043694:70050..70443Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1575043694:65363..65517TCONS_00006475-exon-sc0000067-1575043694:65363..65517Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1575043694:65049..65156TCONS_00006475-exon-sc0000067-1575043694:65049..65156Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1575043694:64630..64691TCONS_00006475-exon-sc0000067-1575043694:64630..64691Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1575043694:64349..64448TCONS_00006475-exon-sc0000067-1575043694:64349..64448Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1575043694:64106..64229TCONS_00006475-exon-sc0000067-1575043694:64106..64229Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1575043694:61813..61871TCONS_00006475-exon-sc0000067-1575043694:61813..61871Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1575043694:61507..61641TCONS_00006475-exon-sc0000067-1575043694:61507..61641Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1575043694:60759..61278TCONS_00006475-exon-sc0000067-1575043694:60759..61278Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1510915933:70050..70443TCONS_00006475-exon-sc0000067-1510915933:70050..70443Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1510915933:65363..65517TCONS_00006475-exon-sc0000067-1510915933:65363..65517Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1510915933:65049..65156TCONS_00006475-exon-sc0000067-1510915933:65049..65156Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1510915933:64630..64691TCONS_00006475-exon-sc0000067-1510915933:64630..64691Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1510915933:64349..64448TCONS_00006475-exon-sc0000067-1510915933:64349..64448Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1510915933:64106..64229TCONS_00006475-exon-sc0000067-1510915933:64106..64229Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1510915933:61813..61871TCONS_00006475-exon-sc0000067-1510915933:61813..61871Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1510915933:61507..61641TCONS_00006475-exon-sc0000067-1510915933:61507..61641Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1510915933:60759..61278TCONS_00006475-exon-sc0000067-1510915933:60759..61278Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1491911889:70050..70443TCONS_00006475-exon-sc0000067-1491911889:70050..70443Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1491911889:65363..65517TCONS_00006475-exon-sc0000067-1491911889:65363..65517Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1491911889:65049..65156TCONS_00006475-exon-sc0000067-1491911889:65049..65156Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1491911889:64630..64691TCONS_00006475-exon-sc0000067-1491911889:64630..64691Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1491911889:64349..64448TCONS_00006475-exon-sc0000067-1491911889:64349..64448Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1491911889:64106..64229TCONS_00006475-exon-sc0000067-1491911889:64106..64229Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1491911889:61813..61871TCONS_00006475-exon-sc0000067-1491911889:61813..61871Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1491911889:61507..61641TCONS_00006475-exon-sc0000067-1491911889:61507..61641Clytia hemisphaericaexon
TCONS_00006475-exon-sc0000067-1491911889:60759..61278TCONS_00006475-exon-sc0000067-1491911889:60759..61278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:60759..70443 -
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00006475 vs. Swiss-Prot (Human)
Match: LMAN1 (Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=2)

HSP 1 Score: 340.502 bits (872), Expect = 1.274e-109
Identity = 164/297 (55.22%), Postives = 218/297 (73.40%), Query Frame = 1 
Query:  307 HTRFEYKQSFKGPHLVNKQGNIPFWTYYGSAIPSDEQVRVTPSLKDQRGGLWAKTKTNAPFWEIEVFFKVSGRGRVGGDGLAVWFTKDQGTTGPVFGSSDHWTGMGLFFDSFDNDGEQNNPYVMVMLNDGTKTYDHFKDGSNQQLGGCMRDFRNRPHAIRAKVRYYNNVLTVFYHNGMSEKSEDYELCMRAENVELPKEGFFGVTAATGGLADDHDVIKFLTHSLTPPLSEEEKK-KMISEDQRKKYEEQYGEFTHKLEEKKTEFQKEHPEKQVQ--EEKFESVYERDVRLIYEGQN 1188
            H RFEYK SFKGPHLV   G +PFW + G+AIPS +Q+RV PSLK QRG +W KTK     WE+EV F+V+GRGR+G DGLA+W+ ++QG  GPVFGS+D W G+G+FFDSFDNDG++NNP ++++ N+G   YDH  DG++Q L  C RDFRN+P+ +RAK+ YY N LTV  +NG +    DYE C + EN+ +P +G FG++AATGGLADDHDV+ FLT  LT P  E     K ISE +++KY+E++  F  +L++KK EFQK HP+ Q Q  EE FESV +R++R ++EGQN
Sbjct:   43 HRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKGHPDLQGQPAEEIFESVGDRELRQVFEGQN 339
The following BLAST results are available for this feature:
BLAST of TCONS_00006475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LMAN11.274e-10955.22Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=... [more]
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