TCONS_00006473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006473
Unique NameTCONS_00006473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006473 ID=TCONS_00006473|Name=TCONS_00006473|organism=Clytia hemisphaerica|type=transcript|length=1494bp
TTCCAAAATACGGCGACAGAACTCGAAATCtcgaaattcttttcaaaaca
aatatggcgacCGGAATGGCAGAGAGACACGTTGCTCACatcttattttt
tgtatttcacTGCCTCCTTTTGGCATATGCTGAAGAAGGAAGGCACACTA
GATTTGAATATAAACAGAGTTTCAAGGGACCTCATCTTGTCAACAAACAG
GGCAACATTCCCTTCTGGACGTACTATGGAAGTGCTATTCCAAGTGATGA
GCAAGTTCGTGTTACACCATCACTGAAAGACCAAAGAGGAGGATTATGgg
ccaaaaccaaaacaaatgcTCCTTTCTGGGAAATAGAAGTCTTCTTCAAA
GTGTCAGGAAGGGGGAGAGTTGGAGGAGATGGTCTGGCTGTGTGGTTCAC
CAAAGACCAAGGAACAACTGGTCCAGTTTTCGGAAGTTCAGACCACTGGA
CTGGAATGGGATTATTCTTTGACTCATTTGATAATGATGGAGagCAAAAC
AATCCTTATGTTATGGTGATGTTGAACGATGGGACCAAAACTTATGATCA
TTTCAAAGATGGAAGCAACCAACAACTAGGAGGCTGCATGAGAGATTTTA
GAAATCGACCACACGCCATCCGCGCTAAAGTCCGATATTACAATAATGTT
TTAACGGTGTTTTACCATAATGGTATGTCAGAGAAGAGTGAAGATTATGA
ACTTTGTATGAGGGCAGAAAATGTGGAACTACCAAAAGAAGGATTCTTTG
GTGTCACAGCAGCTACTGGTGGCCTCGCTGatgATCATGATGTTATCAAG
TTTCTTACACACAGTTTGACTCCACCACTCTCTGAAGAagaaaagaaaaa
gttgatttcAGAAGACCAACGGAAGAAATACGAAGAGCAGTATGGAGAAT
TTACTCATAAATtggaagaaaagaaaacagaatTCCAAAAAGAACACCCT
GAGAAACAAGTACAGGAAGAAAAGTTTGAATCAGTGTACGAGCGAGACGT
TCGTCTCATTTACGAAGGACAAAACTCTNTATAGAGAGCACACTGTATTA
CATCATTTTGATGCTAAAAAATTACTTTTGGGGGAAATGATCGATCAGGA
TTTTTTGCTGGACATTTTTTTCAttgagaaaatttgaattttgtgtTTCA
ATGTTGAGGTGTAATGTTTTATTTCTGCAATTATAGAAGTTTATGTAAAA
AAAGTGCACTTGATTTCAAATTCCGGCAGCAAATTTCCTCATCACTCATT
TTAGCTAATATAGTTTTCACGAAAAatctaatctgtaaaattttaTAACA
TATTATAGCTTTAAATACAGTCacattgtcaaaatattttgatattttat
tttctttgatatAATATTCTTGTAGGGATTTGAAAGATTTGTTCATATTT
TAATGAATAGATATTATCATAggtagatttttatttttctgttttaattt
tttttgtgaatggtgaagtaaagaatttttaagaatctgaataa
Run BLAST on NCBI

transcript from alignment at sc0000067:60759..70280-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006473 ID=TCONS_00006473|Name=TCONS_00006473|organism=Clytia hemisphaerica|type=transcript|length=9522bp|location=Sequence derived from alignment at sc0000067:60759..70280- (Clytia hemisphaerica)
TTCCAAAATACGGCGACAGAACTCGAAATCTCGAAATTCTTTTCAAAACA
AATATGGCGACCGGAATGGCAGAGAGACACGTTGCTCACATCTTATTTTT
TGTATTTCACTGCCTCCTTTTGGCATATGCTGAAGAAGGAAGGCACACTA
GATTTGAATATAAACAGAGTTTCAAGGGACCTCATCTTGTCAACAAACAG
GGCAACATTCCCTTCTGGACGTACTATGGAAGTAAGATAAATTTTCATTA
TTTTTATGTATTTAACATTGATCATTGAGTGATGGGATATGTAATCTGGT
GATGGGGCTGATTCATAGCTGTGTATTAGTAGAGGGTTATTTGTGAGCAT
TAAATCCAGTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGAAGGTTTCAGATAGTCTTTTTGCTCA
GGTACTTGTAGAAAAGACAAGGTATCTTCTAAAATAGATTTGGTAAATCC
GTTGAAATCCTTCCTCAAACGATCAAGGTCCTTTCCATATTGGTAGGTTT
TGATACATCTCTTGATGTTGTCGGTAGGAGCTAGTAGGCAGAGTTAGTAA
CTATTTGATTTTATACAATTTAGTTGTCTTAACTGATGGAGCTATTATAA
TGATTTAAATGAATACAGGTAGACAGGAAATAAAAGCTTATCACCTTTTA
ATAGTTTAATAGTCATCTGAACTCTCATCTAATTAGGTAGGCAAACAACA
AGAATAGATTTTAGATGGGTAGGATTACACATTTAAAACCTCTTTGATAA
CAAAAGTACATTAATTAAAGTTTAATGTTAACACAATCATCAGATGTATA
TACTGAATGATTAAAAATCTCTTATTTTATGAAGTCTACAAAGTGATTTT
AAATAATAAAAGAGGTCATTTTTAAAAAGCATTAAAAACATTAGAAATAT
TTTTGCGAGAAATCATATTGTTGAAATATTGCATGAGACAAAGTCAAGAT
ACCTGGATCTCACGCTCAATGCATGAGAGTTGGTTAACTTTGTGCAACCC
CCTTTTAATCCTGACATCAACTTCTTTGCTTTAGGGAAAAATGGGCAGAA
TGGCTTTTTGGACCTACCTGGAGGTCCTATAAATTAACCTGTGTTCGTCT
GTCCGTCCGTCCGTCCGTCTGTTACCAACTTTTCTCAGGATTGAATCATA
GGAATCTTTTGATTTTTGGTACAAAGGCGCAAGATGGTAGTGGCCAAAAT
GTGACGGAGCCCGATTTTCGAAAAAAAAAAATTTGGGCCAAATTTGGGCG
AAAAAACAGCTAAAAAACGGATTCAAAAAATTGGATCATTAATTTTTTCT
GATTTTTTGCATGAAAGTAGGCTAACATCATTGGTAAAAGATGGCTCAAG
CAGATTTTTGCAAAAAAATTTTGTTGGCTCAAAAAACGCATGTTTATCTA
TAAGAATCACTATTAATAAGCATATATCAATGTTCTTAGTCAAATTACTC
AATTTTTTATGAGATAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTGAAGAAT
ATGTGTGTTTAGACATGAAATTTTGGTTGCTTGGCGTGTTTTTATAGAAA
AACTGGCCAAATTTGATATTTTTCTATAAGCACATTAGTAATTACTTAGG
TATTAGCTTTTCTCGAGATTGGCTCTTTCATTCTTTATGATTTTTTGCAA
AAAGATGCACATAACTATGAACCCTTGAATGTGACGGAGCTCGATTTTTG
GAGAAAAAAAATTTTGGGTAAATTTCAGCTACAAAACGGCTAAAAAAGGG
TTTTTTGGACTATGTGAAATATTGGATCATTGTATTTTTCTGATTTTTTG
CATGAAAGTAGGTAAAAGATGGCTCAGGCAGATTTTTGTAAAAAAAAGAA
TTTTTCAACTCAAAAAACGCATCTTTATCTATAAGAATCACTATTAAAAA
GCATACGTCAATGATGTTAGCCAAATTACCCAATTCTTTAATGAGATAGA
TGTTTTTTTTGCTCACAAAGTCTTGAATATGAAAGAATATTTCAAGAGCA
TGAAATTTTGGTTTCTAAACGTTTTTTTTATAAGAAACANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TGTGTTCTGAATGATTGTTTACAGTCATGCTGACGTAGATATCAATTATA
TGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTTTTT
GCTAAATAAGTAAATAAAATATTTTATACTCATAATTTATTGTTCTACAG
AAAGGTGATGGAAAAGAAAGGTTGTTGACATAAGACCAACAAACTCCTCA
GGACTAGTAACTAGATTAGAATGGCCTCTTTATTCTTTTTCTTTACGTAG
GAAGGACGTGATACCATTTTTAATCCAAAAAATTAAACATTATGTAACTG
CTACAAAAGCATTACATAATTTTAGTGTCAGGATAACCTAATATCAATAT
TTTACCATTCAATTTGTAGCTTCATTGATTGCTAAGATTATGTAATGTTT
TCCGATTTAAAGAGCTTTGTATCCTGCAAAAGGTTTTTTTTGGTGCACCT
GGTAGCATTTTCCATGTGTAAGCCAGGAAATTTTTTGGAAAACATCATGA
ATTAAACAATATTAGAAAATGTGGGGACAGTGGGAGAAACCCTTGAAAAA
GTATAAGAATTTGGGAGAAATTTTTAATGTGGTTGAATGAATTGAAAGTG
CTGAAACGGCAGAGTCTCCCATCCAATGGGAAAAATTGACAGCTATGGTA
AAGTCTTGGCGCGATTCTTTGTTGCAGCACACAAAAAGTTAAAGGGCTCA
AGTTAGAACAAATTTTCACTGAGACCGCCTGTAGTGATTGTTAATTTCTT
GACTTTTCCTACCAGTAGTGTCCACCCAAAAGGTGCTCCATGAAGTATAA
ATCTTGAGCGGAGTAGATGAAAATCCCATTTTAGTGTAGATAGTTGAGAA
TTTGCATTGAGGGAATGGTCACTCAAAAAAACCATGTAAGGAAGTTTGTC
AAGTTGGGTGCAATAGCTCTTCTAACCTGTAAGGCTTGGGGCAAAAAAAA
AACAATGCAGAAAATAAGGGCCCACTCAAAGGGGTAAAAAAATGGTGGAA
AGTACTCTTTAAAAGTTTCTTGTTTGTAACAGGTTAAAAACAGCCCAAAC
TTATGGAAAATGGCCTAAGAGGTTTACTCGTTTTTCTCCAGGTCCCTTGA
AACCTTTTTCATTTTTTTTCCAAAATATTAAACTACTTGGCATGATTCTT
GAGTACTTTGTCAAGTTGTTGTTTCAGATTAAGATTAGATTAGACCATAT
TCATGTGTTTCAGGTGCTATTCCAAGTGATGAGCAAGTTCGTGTTACACC
ATCACTGAAAGACCAAAGAGGAGGATTATGGGCCAAAACCAAAACAAATG
CTCCTTTCTGGGAAATAGAAGTCTTCTTCAAAGTGTCAGGAAGGGGGAGA
GTTGGAGGAGATGGTCTGGTGAGTTATTGAGACCTTTTTCGGTATGTTGC
TGAAATTCTGTTGACAGAGGGACTTAACAGCTAGAAGCTAACTCAATTTT
TATAATCATTGAACTATTCATTCACCTTGCCAAATTTTTTTGCAGGTCTA
CTAACAATTTCAAAATTCAGGTTTCCCTTGATTACGCAAGCATTTTGACT
TTTATAAAATCACTTAATTTTTAGGCTGTGTGGTTCACCAAAGACCAAGG
AACAACTGGTCCAGTTTTCGGAAGTTCAGACCACTGGACTGGAATGGGAT
TATTCTTTGACTCATTTGATAATGATGGAGAGGTAAAATTTTCAATAAAG
AATAAGAAATTATTTCAAATTTTCAGATGTCTACGTACTTGGCTATAATT
TTATAGACAGCTCCAGCTTTGTAAAGCTTCACTGTTGGTTATGGTATTCC
ATTGTCTGCATCACGGCAAATAAAACTTACTTACACATTATGTATTAAAG
ATTCAAAAAATGATGAGTTATTAGTAACATGCATAATAACTTCAGGATGC
TTTCAAAATTAACTTCACCGTTTATTCAAAAAATAATATGAATCTTATAA
AAGATTACAATGAATTTTCATTACTTTATTGAGATGCTGATTAAAAGGTG
TTTGATTATTTTTATAAAAACATACTGTTACATTTTTAGCAAAACAATCC
TTATGTTATGGTGATGTTGAACGATGGGACCAAAACTTATGATCATTTCA
AGTAAGATAACTTAACTTGAGCACATTTTCCTTATGAGCCAGTCGCTATA
ACTCGAATTTGCCATAACTAGAAGAAATTTTTGTTTTTTCTTTCTTGTCT
CGTTTCTTGAGTTGTGGACACTCTTTTCATATCACCTTTTCACTTTTTTC
TCACAAAGGAGTTCAATGTTCTTTTTGTTTAGAGATGGAAGCAACCAACA
ACTAGGAGGCTGCATGAGAGATTTTAGAAATCGACCACACGCCATCCGCG
CTAAAGTCCGATATTACAATAATGTTTTAACGGTAAGTTTAGAGTTTTTC
TTTCATTTAGAGGGTTTAAATTTCTGTTAAAGTTTTTAAAAATGCAACAA
ATTGAGAAAAATGAGATGCTATATTCGAAAATTGTTTTCCTTGATTTTTA
GGTGTTTTACCATAATGGTATGTCAGAGAAGAGTGAAGATTATGAACTTT
GTATGAGGGCAGAAAATGTGGAACTACCAAAAGAAGGATTCTTTGGTGTC
ACAGCAGCTACTGGTGGCCTCGCTGGTAAGAACCTACCAAATAGTTGATA
AATGCGTTTTGATAATGGTGGGAGAGACTTAATGCCAACTGTAAAAGTAA
ATAATACTTGTAACCACACTCTAGATGACACAAAGGCTTCCTTTTGTTTG
CTTTCTAACTAACTGCTTCATCATCCCTTTGAACTCTTTTTTTACTCGTT
ATCGTTGTTTTATAATGCTTGCTATATAGCTAAAATAGATTTATTCTTTT
TTATTTAGATGATCATGATGTTATCAAGTTTCTTACACACAGTTTGACTC
CACCACTCTCTGAAGAAGTAAGATTCCCATTTCCGTTTAATCCGTCAGAT
GGCTAAATAAATACGTTAATATGATTTGAGACCGAAACAGTATAATAATA
TTAATTCGATCAGAGTCAATAATAGTTCTGTTAGAATCATACTTAAAAAT
AAATGTGCCTAATGATCTTTTGGAATTTTTGTTGTATAGGAAAAGAAAAA
GTTGATTTCAGAAGACCAACGGAAGAAATACGAAGAGCAGTATGGAGAAT
TTACTCATAAATTGGAAGAAAAGAAAACAGAATTCCAAAAAGAACACCCT
GAGAAACAAGTACAGGAAGAAAAGGTATTAATCCACTTTCACTTTTCTAA
TTACCAGGGTCCACCATTTTTGTTTGCGATCGAAATCTCAGAAACTAAAG
ACCGAGAAAAGCTGAGAAAAGCCGAATTTTTTTGGTAAACTTAATATAGA
GTTTTATGACATTTTTTTATCTAGCCACAATATAATTATTTTTCAACTTA
CCATTTGTCCTTTGGATGAATATTGTTATGTTCTATTGATTTCTCTCTTT
AGTTTGAATCAGTGTACGAGCGAGACATTCGTCTCATTTACGAAGGACAA
AACTCCATGCATCAAATCATGAGAGGTTTACATTCCAAGACTGGAGAATT
GACAACGGAAATCAATAATTTACATTCCGCCGTCAACCAAAAGACGAGCG
GTGGTGGAGGCTCCAGTGATGGACCAAGCCGCAATGATGTCAACAGATTA
ATCAACTTACAAAATGAAGTTCATACAGCTATAAGAGATTTACAGTAAGC
AAGCCTTTCAATTTTAGAGTGATTCATCTATCACTCTAGCTTATTATCTC
AATATTTGACGATCCAGCTTTGGATTCAATGCTTGTTATGAGGAAAACAA
TAATTTATCAACCTTTTTGTTTTTTAAAAGCTTTTGCTTACTTCCAAAAA
CCTTTTAAAGAGATGACATTAATAGTATTATGGTATCATTGAATTAAAGA
AGGATTTATCTTGCTCGAAGAATTTATAGTTACCTGGATGGACTGTATGG
AGACATAACATTGTGTAACAATTTTTTGCTTTGTAGATCCAGAAGTGGAA
ACACAGACGATCAAAGGAAATTGGAAAGAGTTGAACAAAATATTCGAACC
ATTTTAGAAAATGTTGTTTTATTAGCTTCAAAGGTATAAAATCAAGTTTC
GGTTTTCTATAATTTTTTCTAGACCTTACGTCAACATCTTCTTTTTGTTG
TTTGATGATTAGAGATCGTCTCATTTTTTTCTTGATTTAATCAAAAGGCT
TGGAAGAAAATAAAATGTCCAGTCCTTTTGATCCTGTTAATATGATATAA
AATCACTTTTTCATTTCCAGATGAACGACAAAACGAATAAACAAGCCTCA
CAGCAGAATTGCCCGACCGTCACATGTTTATCCACCGGTACTTTCATATT
CATGATGTTTCTACAAATCGCCCTCATTGTCGGCTATTCAATGTATCAAA
ACTATCAACAACAACAAGCTAAAAAATTTTATTAGAAATATTTTTAAAAT
ATACTCTTTTTTATAAATTGCATAGTTACCTTAGAGTCTCCACAGCTCGA
AGCTCCATAACTCTAATGTCTCCTTAACTAACGAGTTATCTGACCTGTTT
AGCTGACCAACTGTTATAAACCAGTCTCCTNAGGAAGGATTCTTTGGTGT
CACAGCAGCTACTGGTGGCCTCGCTGGTAAGAACCTACCAAATAGTTGAT
AAATGCGTTTTGATAATGGTGGGAGAGACTTAATGCCAACTGTAAAAGTA
AATAATACTTGTAACCACACTCTAGATGACACAAAGGCTTCCTTTTGTTT
GCTTTCTAACTAACTGCTTCATCATCCCTTTGAACTCTTTTTTTACTCGT
TATCGTTGTTTTATAATGCTTGCTATATAGCTAAAATAGATTTATTCTTT
TTTATTTAGATGATCATGATGTTATCAAGTTTCTTACACACAGTTTGACT
CCACCACTCTCTGAAGAAGTAAGATTCCAATTTCCGTTTAATCTGTCAGA
TGGCTAAATAAATACGTTAATATGATTTGAGACCGAAACAGCAGAATAAT
ATTAATTCGATCAGAGTCAATAATAGTTCTGTTAGAATCATACTTAAAAG
TAAAAGGCTTAATGATCTTTTGAAATTTTTCTTGTATAGGAAAAGAAGAA
GATGATTTCAGAAGACCAACGGAAGAAATACGAAGAGCAGTATGGAGAAT
TTACTCATAAATTGGAAGAAAAGAAAACAGAATTCCAAAAAGAACACCCT
GAGAAACAAGTACAGGAAGAAAAGGTATTAATCCACTTTCACTTTTCTAA
TTACCAGGGTCCACCATTTTTGTTTGCGATCGAAATCTCAGAAACTAAAG
ACCGAGAAAAGCTGAGGAAAGCCGAATTTTTTTGGTAAACTTAATATAGA
GTTTTATGACATTTTCCTATCTAGCCACAATATAATTCTTTTTCAACTTA
CCATTTGTCCTTTGGATGAATATTGTTATGTTCTATTGCTTTCTCTCTTT
AGTTTGAATCAGTGTACGAGCGAGACGTTCGTCTCATTTACGAAGGACAA
AACTCTNTATAGAGAGCACACTGTATTACATCATTTTGATGCTAAAAAAT
TACTTTTGGGGGAAATGATCGATCAGGATTTTTTGCTGGACATTTTTTTC
ATTGAGAAAATTTGAATTTTGTGTTTCAATGTTGAGGTGTAATGTTTTAT
TTCTGCAATTATAGAAGTTTATGTAAAAAAAGTGCACTTGATTTCAAATT
CCGGCAGCAAATTTCCTCATCACTCATTTTAGCTAATATAGTTTTCACGA
AAAATCTAATCTGTAAAATTTTATAACATATTATAGCTTTAAATACAGTC
ACATTGTCAAAATATTTTGATATTTTATTTTCTTTGATATAATATTCTTG
TAGGGATTTGAAAGATTTGTTCATATTTTAATGAATAGATATTATCATAG
GTAGATTTTTATTTTTCTGTTTTAATTTTTTTTGTGAATGGTGAAGTAAA
GAATTTTTAAGAATCTGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003679XLOC_003679Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006473-exon-sc0000067-1575043694:70050..70280TCONS_00006473-exon-sc0000067-1575043694:70050..70280Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1575043694:65363..65517TCONS_00006473-exon-sc0000067-1575043694:65363..65517Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1575043694:65049..65156TCONS_00006473-exon-sc0000067-1575043694:65049..65156Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1575043694:64630..64691TCONS_00006473-exon-sc0000067-1575043694:64630..64691Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1575043694:64349..64448TCONS_00006473-exon-sc0000067-1575043694:64349..64448Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1575043694:64106..64229TCONS_00006473-exon-sc0000067-1575043694:64106..64229Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1575043694:63814..63872TCONS_00006473-exon-sc0000067-1575043694:63814..63872Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1575043694:63507..63641TCONS_00006473-exon-sc0000067-1575043694:63507..63641Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1575043694:60759..61278TCONS_00006473-exon-sc0000067-1575043694:60759..61278Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1510915933:70050..70280TCONS_00006473-exon-sc0000067-1510915933:70050..70280Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1510915933:65363..65517TCONS_00006473-exon-sc0000067-1510915933:65363..65517Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1510915933:65049..65156TCONS_00006473-exon-sc0000067-1510915933:65049..65156Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1510915933:64630..64691TCONS_00006473-exon-sc0000067-1510915933:64630..64691Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1510915933:64349..64448TCONS_00006473-exon-sc0000067-1510915933:64349..64448Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1510915933:64106..64229TCONS_00006473-exon-sc0000067-1510915933:64106..64229Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1510915933:63814..63872TCONS_00006473-exon-sc0000067-1510915933:63814..63872Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1510915933:63507..63641TCONS_00006473-exon-sc0000067-1510915933:63507..63641Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1510915933:60759..61278TCONS_00006473-exon-sc0000067-1510915933:60759..61278Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1491911889:70050..70280TCONS_00006473-exon-sc0000067-1491911889:70050..70280Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1491911889:65363..65517TCONS_00006473-exon-sc0000067-1491911889:65363..65517Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1491911889:65049..65156TCONS_00006473-exon-sc0000067-1491911889:65049..65156Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1491911889:64630..64691TCONS_00006473-exon-sc0000067-1491911889:64630..64691Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1491911889:64349..64448TCONS_00006473-exon-sc0000067-1491911889:64349..64448Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1491911889:64106..64229TCONS_00006473-exon-sc0000067-1491911889:64106..64229Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1491911889:63814..63872TCONS_00006473-exon-sc0000067-1491911889:63814..63872Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1491911889:63507..63641TCONS_00006473-exon-sc0000067-1491911889:63507..63641Clytia hemisphaericaexon
TCONS_00006473-exon-sc0000067-1491911889:60759..61278TCONS_00006473-exon-sc0000067-1491911889:60759..61278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:60759..70280 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.6706	15.6276	31.3222	28.5295	2.97092	3.8224	9.15539	10.4685	12.4051	16.9584	9.23906	13.4776	9.22829	6.96399	9.49161	13.0709	13.2151	10.0117	1.07828	2.50868	7.68593	8.52687	16.5423	21.0745	5.46384	3.21219	5.3245	2.55541	13.6037	16.8625
Blast
[Close]
BLAST of TCONS_00006473 vs. Swiss-Prot (Human)
Match: LMAN1 (Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=2)

HSP 1 Score: 337.421 bits (864), Expect = 4.152e-109
Identity = 163/297 (54.88%), Postives = 217/297 (73.06%), Query Frame = 3 
Query:  144 HTRFEYKQSFKGPHLVNKQGNIPFWTYYGSAIPSDEQVRVTPSLKDQRGGLWAKTKTNAPFWEIEVFFKVSGRGRVGGDGLAVWFTKDQGTTGPVFGSSDHWTGMGLFFDSFDNDGEQNNPYVMVMLNDGTKTYDHFKDGSNQQLGGCMRDFRNRPHAIRAKVRYYNNVLTVFYHNGMSEKSEDYELCMRAENVELPKEGFFGVTAATGGLADDHDVIKFLTHSLTPP-LSXXXXXXLISEDQRKKYEEQYGEFTHKLEEKKTEFQKEHPEKQVQ--EEKFESVYERDVRLIYEGQN 1025
            H RFEYK SFKGPHLV   G +PFW + G+AIPS +Q+RV PSLK QRG +W KTK     WE+EV F+V+GRGR+G DGLA+W+ ++QG  GPVFGS+D W G+G+FFDSFDNDG++NNP ++++ N+G   YDH  DG++Q L  C RDFRN+P+ +RAK+ YY N LTV  +NG +    DYE C + EN+ +P +G FG++AATGGLADDHDV+ FLT  LT P        K ISE +++KY+E++  F  +L++KK EFQK HP+ Q Q  EE FESV +R++R ++EGQN
Sbjct:   43 HRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKGHPDLQGQPAEEIFESVGDRELRQVFEGQN 339
The following BLAST results are available for this feature:
BLAST of TCONS_00006473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LMAN14.152e-10954.88Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=... [more]
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