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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006422 ID=TCONS_00006422|Name=TCONS_00006422|organism=Clytia hemisphaerica|type=transcript|length=7061bpRun BLAST on NCBI protein sequence of TCONS_00006422-protein >TCONS_00006422-protein ID=TCONS_00006422-protein|Name=TCONS_00006422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1138bp MAMTSNAARANEFHSAMLLANHSKVSLEDFELMKVLGTGAYGKVFLVRRKRun BLAST on NCBI transcript from alignment at sc0000067:309619..326948+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006422 ID=TCONS_00006422|Name=TCONS_00006422|organism=Clytia hemisphaerica|type=transcript|length=17330bp|location=Sequence derived from alignment at sc0000067:309619..326948+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000067:309619..326948+ >TCONS_00006422 ID=TCONS_00006422|Name=TCONS_00006422|organism=Clytia hemisphaerica|type=CDS|length=58089bp|location=Sequence derived from alignment at sc0000067:309619..326948+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006422 vs. Swiss-Prot (Human)
Match: KS6A5 (Ribosomal protein S6 kinase alpha-5 OS=Homo sapiens GN=RPS6KA5 PE=1 SV=1) HSP 1 Score: 856.67 bits (2212), Expect = 0.000e+0 Identity = 425/728 (58.38%), Postives = 542/728 (74.45%), Query Frame = 1
Query: 562 NEFHSAMLLANHSKVSLEDFELMKVLGTGAYGKVFLVRRKTGKDSGKLFAMKVIKKSAIVSKAKTTEHTITERHVLEAVRCCPFIVTMHYAFQTEAKLHLIMDYVNGGELFTHLYNREHFTEEHAKFYTAEVGIALDFLHKLGIIYRDIKLENILLDKDGHIVLTDFGLSKEFTPQEQNDGRAYSFCGTIEYMAPEIVKGGQTGHGMAVDWWSLGVLFYELVTGASPFTVEGAKNTQSEISRRIVGKQPPMPRTLSPYGQDLILRLLDKEPQKRLGGGPGGFEEIKQHPLFQNFDWDKLGNKMLEPPFKPVIKDDTDTSNFSEEFTRMLPIDSPAIIPKNAEKIFQGYSFIAPSVLFGXXXXXXXXXXXXXSGVNRPGNASLIYTSMFETSSFHKQYLLS--DEILGKGSFSICKKCVDRKTNLEYAVKIMTRRADRNT--EIQSLRMAQTHPNVVKIHELHEDELHVYLVMEYLRGGELLERIKSKRSFSETEACDIMRKLVSVVKFLHKIGVVHRDLKPENLLFTDKTESAQLKLVDFGFAKVK--GSKPMQTPCFTLSYAAPEILKNATGENKPSSYDESVDIWSLGVILYTMLSGKVPFQP--KQYTNQSAIGIMKSIMQGEVSFNGEEWRDVSLSAKGLIQGLLRVDPTKRMTVEDILSHEWITGRIEMPTTPLRTPNILDSSGNFVGKAFQVALNAYHKAART-VTLMDVASAPLAKRRKMK 2718
+E +A L + KV +E+FEL+KVLGTGAYGKVFLVR+ +G D+GKL+AMKV+KK+ IV KAKTTEHT TER VLE +R PF+VT+HYAFQTE KLHLI+DY+NGGELFTHL RE FTE + Y E+ +AL+ LHKLGIIYRDIKLENILLD +GH+VLTDFGLSKEF E RAYSFCGTIEYMAP+IV+GG +GH AVDWWSLGVL YEL+TGASPFTV+G KN+Q+EISRRI+ +PP P+ +S +DLI RLL K+P+KRLG GP +EIK+H FQ +WD L K + PFKPVI+D+ D SNF+EEFT M P SPA +P+++EK+FQGYSF+APS+LF NA D + GV RPG ++ ++M + S F++ Y L D+ LG+GSFSIC+KCV +K+N +AVKI+++R + NT EI +L++ + HPN+VK+HE+ D+LH +LVME L GGEL ERIK K+ FSETEA IMRKLVS V +H +GVVHRDLKPENLLFTD+ ++ ++K++DFGFA++K ++P++TPCFTL YAAPE+L N G YDES D+WSLGVILYTMLSG+VPFQ + T SA+ IMK I +G+ SF GE W++VS AK LIQGLL VDP KR+ + + +EW+ ++ + PL TP+IL SSG V + +A++K R L +V APLAKRRKMK
Sbjct: 30 HELRTANLTGHAEKVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETE--RAYSFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDLAAKKVPAPFKPVIRDELDVSNFAEEFTEMDPTYSPAALPQSSEKLFQGYSFVAPSILFKRNAAVIDPLQFHM-GVERPGVTNVARSAMMKDSPFYQHYDLDLKDKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKKKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELL-NQNG------YDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQLSSNPLMTPDILGSSGAAVHTCVKATFHAFNKYKREGFCLQNVDKAPLAKRRKMK 747 The following BLAST results are available for this feature:
BLAST of TCONS_00006422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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