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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006411 ID=TCONS_00006411|Name=TCONS_00006411|organism=Clytia hemisphaerica|type=transcript|length=2150bp
AAGCTTTTTACTTTATGCGGTCTACTTAGTTAAATGAATCATCATACTCT
GTTAAAGGGGGTTATAGCGAGAACACATCAGGGAATTACCTGGTGGACAC
AAATTGATAAATTCTCGTGATCTCTCGTTCAGTTAAAACATGATGAGTGA
ACTACTTCATACCAAAACCACTTGAAACTTCTTCAGATAAACACGTACAA
AAATACTTCTCAACATGAAATTTGATATCGTAATTGTGTTAACATCTGTC
CTGTTACTGATATCGAGGCCCAGCCTCGTTCTCACGCTGTCAATACCAAC
GGACACTTGGATCGATATTTCAGACATCTGTAAGATTGATTTTGAAGGGA
ACGTTCAATTTTATTCCAATGGAGGCTTTCGCCAGTGCAATGATGAACTA
TGTCCCATGGAAAGCGATCCTGGACCTTTTGGGAAGGACTGCCGTGCGTG
TTGTATCAATGAAAGACACAAGTTGAAGTCAGCTGACAGATTTGTCCGTT
CTGAAGAACAGTCAGGATGTGAAGGCAACTCGGTGGAATCGAACGGTGAA
AAACAGATGATCATCATAGTGTTGGGGGTTGTTGTTTGCTTGTTATCTCT
TTGCATTATCATCATGGTTGTCATAACCATTCGAAAAAAATCAAAATCAC
GACGACAATGTCGAAGAGCTGGTTCGAAAGAATCCAATACTTCCAGTACG
TCCCAAATCAGAGAAGACGTATCAGTCAAGAAACTTGGCGTGAAAGACAG
CGTACTGACAATAAGCAATGGAACTTTCGAACTTGTAACAAGCAGGCCAA
GCATTCGTAACATACCGGGTATAAAAAAAGACAAACCGAAACAAAATTCA
ACGGCAATTGTGGAGGAGACAGAAACAAATTCACTTTTGGACTCGAATGC
AACGACGAATGTATAGGTCTTTGTGCTGGCTGGTGGACTTCTTGTATATA
AAACATAAGCATGTTGGTGTTATTGTAAATAATTGTAAAATTATAATGTT
GAAATTTTTGTACTTTGTTGTAGTTGAGTTGTTGGGTGTCAGAATTTTAC
CGACGCTTGAACACTGACGAAACGTGCTAGCAAAGCTAAACACCCTCCCC
TTCTCACTAAGCTTACCCTTCTTAGCaatgaactttttgaaattcgTATA
ATAAATAGTCTAGGGAAAACAGAGTTTTTAAAATGGCTCATAATGATAAT
TATTTAAGTACCTACAGTAGTGGAGTCTCTTCAACGCGAACCTCCACGTA
CTCCACTTTTTCCTTATATATTAACTTGGACATGTTTTGTCGCCCCTGAT
TTAACAATGCTAATCTCAACAACTTAAACTCAAATAAATCTCctttgcaa
aaagtttatgTTCCCCGttcgtgttcgagttatggaggccCCATTTTATC
ATTATGAATTAACTTGTAGAAGATTATTGGTtcagcgcgcagcagaatgg
acctttaaaaagcaactgatcgaaaagattttgtctttgtcggggcctgt
gcgcgcaataaattaacaagtccaggctaaaccaactgccgatctagaat
ttttgccccgccgACCCgcacgatgtttgacctatgttttggattgaatt
ggtagtagagtcaaatttctcggttagattaaagggtatTCTTTCAAAta
gggtcaggtagggttagggctagggttggggatgggagttaacccctggt
tagggttttagctcccgggtagagtttggagtaaataccatgtttataag
gaactttgaactcctttgtgcagttgtgactcgatggccgagtggttaag
gcgctggcgttctaatTATAGGTGCTTTAtatatagtgggttcgaatccc
atcagcggcaaaagtttcgagatttcgggaaatgcatcaaaaactatcaa
aatttaGCAATACAAataaagtgtcaaagaatagaagctcagagtggagg
atgggaaggaaatttttttgcatcacttaaggaacccggtacgaacgaca
ttcggttattgccacgtcagctggaccttcacgccgctccggcttcttgt
atatattttatgcatttttgaagaTGCGTTTTTAAATTTAACTGAGTTTT
TTTGgttaataatgtttttaaaaaaaatcaggaaaaaatgtataataaaa Run BLAST on NCBI protein sequence of TCONS_00006411-protein >TCONS_00006411-protein ID=TCONS_00006411-protein|Name=TCONS_00006411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MKFDIVIVLTSVLLLISRPSLVLTLSIPTDTWIDISDICKIDFEGNVQFY
SNGGFRQCNDELCPMESDPGPFGKDCRACCINERHKLKSADRFVRSEEQS
GCEGNSVESNGEKQMIIIVLGVVVCLLSLCIIIMVVITIRKKSKSRRQCR
RAGSKESNTSSTSQIREDVSVKKLGVKDSVLTISNGTFELVTSRPSIRNI
PGIKKDKPKQNSTAIVEETETNSLLDSNATTNV Run BLAST on NCBI transcript from alignment at sc0000067:253812..256437+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006411 ID=TCONS_00006411|Name=TCONS_00006411|organism=Clytia hemisphaerica|type=transcript|length=2626bp|location=Sequence derived from alignment at sc0000067:253812..256437+ (Clytia hemisphaerica)
AAGCTTTTTACTTTATGCGGTCTACTTAGTTAAATGAATCATCATACTCT
GTTAAAGGGGGTTATAGCGAGAACACATCAGGGAATTACCTGGTGGACAC
AAATTGATAAATTCTCGTGATCTCTCGTTCAGTTAAAACATGATGAGTGA
ACTACTTCATACCAAAACCACTTGAAACTTCTTCAGATAAACACGTACAA
AAATACTTCTCAACATGAAATTTGATATCGTAATTGTGTTAACATCTGTC
CTGTTACTGATATCGAGGCCCAGCCTCGTTCTCACGCTGTCAATACCAAC
GGACACTTGGATCGATATTTCAGACATCTGTAAGATTGATTTTGAAGGGA
ACGTTCAATTTTATTCCAATGGAGGCTTTCGCCAGTGCAATGATGAACTA
TGTCCCATGGAAAGCGATCCTGGACCTTTTGGGAAGGACTGCCGTGCGTG
TTGTATCAATGAAAGACACAAGTTGAAGTCAGGTAACAATAAATGGAAAA
TTGAGTCATTGATTTCGTTGAAGGCTCTAAAGAAGCTCTTTACAAATTAC
TCTGATGCGGTTTGACAATTTTCCTATGTCAGGTTGTTAGATTCTGTTCA
AAGCAATCAAAACTCTTTATCTCCCATTGAAAAGGAATCAAGCGGAAACT
ATAGTTCATTTCCACTTTTTGTTTATTGGGGTATACTTTTGCTAGCTTTA
CTTAGTCTAGCACTTTTTGATCTATCTTTTCCCATAGCTGACAGATTTGT
CCGTTCTGAAGAACAGTCAGGATGTGAAGGCAACTCGGTGGAATCGAACG
GTGAAAAACAGATGATCATCATAGTGTTGGGGGTTGTTGTTTGCTTGTTA
TCTCTTTGCATTATCATCATGGTTGTCATAACCATTCGAAAAAGTAAAAC
TATTCTTCTCTTCAAAAGTCTGAGAATCTTTCAGCTCGTTTGggaggtca
aacattttcagaAATGTTAACAAATTGGCAGCACTGATCATAGGATCAAT
AATGATCAAAATAATCTTTTCTGTCTCCTTGCGTCATCACCACCATTAGA
GGACAGCTAATATCAGTTTGATTAGAATATTTCATATCTATTTTTTTTCT
CGTCAATTCGCCAGAATCAAAATCACGACGACAATGTCGAAGAGCTGGTT
CGAAAGAATCCAATACTTCCAGTACGTCCCAAATCAGAGAAGACGTATCA
GTCAAGAAACTTGGCGTGAAAGACAGCGTACTGACAATAAGCAATGGAAC
TTTCGAACTTGTAACAAGCAGGCCAAGCATTCGTAACATACCGGGTATAA
AAAAAGACAAACCGAAACAAAATTCAACGGCAATTGTGGAGGAGACAGAA
ACAAATTCACTTTTGGACTCGAATGCAACGACGAATGTATAGGTCTTTGT
GCTGGCTGGTGGACTTCTTGTATATAAAACATAAGCATGTTGGTGTTATT
GTAAATAATTGTAAAATTATAATGTTGAAATTTTTGTACTTTGTTGTAGT
TGAGTTGTTGGGTGTCAGAATTTTACCGACGCTTGAACACTGACGAAACG
TGCTAGCAAAGCTAAACACCCTCCCCTTCTCACTAAGCTTACCCTTCTTA
GCaatgaactttttgaaattcgTATAATAAATAGTCTAGGGAAAACAGAG
TTTTTAAAATGGCTCATAATGATAATTATTTAAGTACCTACAGTAGTGGA
GTCTCTTCAACGCGAACCTCCACGTACTCCACTTTTTCCTTATATATTAA
CTTGGACATGTTTTGTCGCCCCTGATTTAACAATGCTAATCTCAACAACT
TAAACTCAAATAAATCTCctttgcaaaaagtttatgTTCCCCGttcgtgt
tcgagttatggaggccCCATTTTATCATTATGAATTAACTTGTAGAAGAT
TATTGGTtcagcgcgcagcagaatggacctttaaaaagcaactgatcgaa
aagattttgtctttgtcggggcctgtgcgcgcaataaattaacaagtcca
ggctaaaccaactgccgatctagaatttttgccccgccgACCCgcacgat
gtttgacctatgttttggattgaattggtagtagagtcaaatttctcggt
tagattaaagggtatTCTTTCAAAtagggtcaggtagggttagggctagg
gttggggatgggagttaacccctggttagggttttagctcccgggtagag
tttggagtaaataccatgtttataaggaactttgaactcctttgtgcagt
tgtgactcgatggccgagtggttaaggcgctggcgttctaatTATAGGTG
CTTTAtatatagtgggttcgaatcccatcagcggcaaaagtttcgagatt
tcgggaaatgcatcaaaaactatcaaaatttaGCAATACAAataaagtgt
caaagaatagaagctcagagtggaggatgggaaggaaatttttttgcatc
acttaaggaacccggtacgaacgacattcggttattgccacgtcagctgg
accttcacgccgctccggcttcttgtatatattttatgcatttttgaaga
TGCGTTTTTAAATTTAACTGAGTTTTTTTGgttaataatgtttttaaaaa
aaatcaggaaaaaatgtataataaaa Coding sequence (CDS) from alignment at sc0000067:253812..256437+ >TCONS_00006411 ID=TCONS_00006411|Name=TCONS_00006411|organism=Clytia hemisphaerica|type=CDS|length=2106bp|location=Sequence derived from alignment at sc0000067:253812..256437+ (Clytia hemisphaerica)
ATGAAATTTGATATCGTAATTGTGTTAACATCTGTCCTGTTACTGATATC
GAGGCCCAGCCTCGTTCTCACGCTGTCAATACCAACGGACACTTGGATCG
ATATTTCAGACATCTGTAAGATTGATTTTGAAGGGAACGTTCAATTTTAT
TCCAATGGAGGCTTTCGCCAGTGCAATGATGAACTATGTCCCATGGAAAG
CGATCCTGGACCTTTTGGGAAGGACTGCCGTGCGTGTTGTATCAATGAAA
GACACAAGTTGAAGTCAGCTGACAGATTTGTCCGTTCTGAAGAACAGTCA
GGATGTGAAGGCAACTCGGTGGAATCGAACGGTGAAAAACAGATGATCAT
CATAGTGTTGGGGGTTGTTGTTTGCTTGTTATCTCTTTGCATTATCATCA
TGGTTGTCATAACCATTCGAAAAAAATCAAAATCACGACGACAATGTCGA
AGAGCTGGTTCGAAAGAATCCAATACTTCCAGTACGTCCCAAATCAGAGA
AGACGTATCAGTCAAGAAACTTGGCGTGAAAGACAGCGTACTGACAATAA
GCAATGGAACTTTCGAACTTGTAACAAGCAGGCCAAGCATTCGTAACATA
CCGGGTATAAAAAAAGACAAACCGAAACAAAATTCAACGGCAATTGTGGA
GGAGACAGAAACAAATTCACTTTTGGACTCGAATGCAACGACGAATGTAT
AGATGAAATTTGATATCGTAATTGTGTTAACATCTGTCCTGTTACTGATA
TCGAGGCCCAGCCTCGTTCTCACGCTGTCAATACCAACGGACACTTGGAT
CGATATTTCAGACATCTGTAAGATTGATTTTGAAGGGAACGTTCAATTTT
ATTCCAATGGAGGCTTTCGCCAGTGCAATGATGAACTATGTCCCATGGAA
AGCGATCCTGGACCTTTTGGGAAGGACTGCCGTGCGTGTTGTATCAATGA
AAGACACAAGTTGAAGTCAGCTGACAGATTTGTCCGTTCTGAAGAACAGT
CAGGATGTGAAGGCAACTCGGTGGAATCGAACGGTGAAAAACAGATGATC
ATCATAGTGTTGGGGGTTGTTGTTTGCTTGTTATCTCTTTGCATTATCAT
CATGGTTGTCATAACCATTCGAAAAAAATCAAAATCACGACGACAATGTC
GAAGAGCTGGTTCGAAAGAATCCAATACTTCCAGTACGTCCCAAATCAGA
GAAGACGTATCAGTCAAGAAACTTGGCGTGAAAGACAGCGTACTGACAAT
AAGCAATGGAACTTTCGAACTTGTAACAAGCAGGCCAAGCATTCGTAACA
TACCGGGTATAAAAAAAGACAAACCGAAACAAAATTCAACGGCAATTGTG
GAGGAGACAGAAACAAATTCACTTTTGGACTCGAATGCAACGACGAATGT
ATAGATGAAATTTGATATCGTAATTGTGTTAACATCTGTCCTGTTACTGA
TATCGAGGCCCAGCCTCGTTCTCACGCTGTCAATACCAACGGACACTTGG
ATCGATATTTCAGACATCTGTAAGATTGATTTTGAAGGGAACGTTCAATT
TTATTCCAATGGAGGCTTTCGCCAGTGCAATGATGAACTATGTCCCATGG
AAAGCGATCCTGGACCTTTTGGGAAGGACTGCCGTGCGTGTTGTATCAAT
GAAAGACACAAGTTGAAGTCAGCTGACAGATTTGTCCGTTCTGAAGAACA
GTCAGGATGTGAAGGCAACTCGGTGGAATCGAACGGTGAAAAACAGATGA
TCATCATAGTGTTGGGGGTTGTTGTTTGCTTGTTATCTCTTTGCATTATC
ATCATGGTTGTCATAACCATTCGAAAAAAATCAAAATCACGACGACAATG
TCGAAGAGCTGGTTCGAAAGAATCCAATACTTCCAGTACGTCCCAAATCA
GAGAAGACGTATCAGTCAAGAAACTTGGCGTGAAAGACAGCGTACTGACA
ATAAGCAATGGAACTTTCGAACTTGTAACAAGCAGGCCAAGCATTCGTAA
CATACCGGGTATAAAAAAAGACAAACCGAAACAAAATTCAACGGCAATTG
TGGAGGAGACAGAAACAAATTCACTTTTGGACTCGAATGCAACGACGAAT
GTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006411-exon-sc0000067-1491911889:253812..254293 | TCONS_00006411-exon-sc0000067-1491911889:253812..254293 | Clytia hemisphaerica | exon |
| TCONS_00006411-exon-sc0000067-1510915933:253812..254293 | TCONS_00006411-exon-sc0000067-1510915933:253812..254293 | Clytia hemisphaerica | exon |
| TCONS_00006411-exon-sc0000067-1575043694:253812..254293 | TCONS_00006411-exon-sc0000067-1575043694:253812..254293 | Clytia hemisphaerica | exon |
| TCONS_00006411-exon-sc0000067-1491911889:254549..254704 | TCONS_00006411-exon-sc0000067-1491911889:254549..254704 | Clytia hemisphaerica | exon |
| TCONS_00006411-exon-sc0000067-1510915933:254549..254704 | TCONS_00006411-exon-sc0000067-1510915933:254549..254704 | Clytia hemisphaerica | exon |
| TCONS_00006411-exon-sc0000067-1575043694:254549..254704 | TCONS_00006411-exon-sc0000067-1575043694:254549..254704 | Clytia hemisphaerica | exon |
| TCONS_00006411-exon-sc0000067-1491911889:254926..256437 | TCONS_00006411-exon-sc0000067-1491911889:254926..256437 | Clytia hemisphaerica | exon |
| TCONS_00006411-exon-sc0000067-1510915933:254926..256437 | TCONS_00006411-exon-sc0000067-1510915933:254926..256437 | Clytia hemisphaerica | exon |
| TCONS_00006411-exon-sc0000067-1575043694:254926..256437 | TCONS_00006411-exon-sc0000067-1575043694:254926..256437 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:253812..256437 + |
Blast
The following BLAST results are available for this feature:
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