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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006409 ID=TCONS_00006409|Name=TCONS_00006409|organism=Clytia hemisphaerica|type=transcript|length=2027bp
ATCATTTCATTGATCAATTGCTCAGATTAGACCTCAGTTACTTGATCGTC
TTGACTAGAGGGAGAGCCCTGGAAGACCtcgaatatattttttatttgtt
ttcacttATCTTGATATTTGTGTTTATAATTTACTGTGCTTTACGATATT
TACACTACAATATGGTTACAGAGTAATTCAGTAATGATTCTTGGCTATCT
TTCGTGGTCATGACGAGAGAGCAAAACTTTGTTGTGATTGTGGGGACAGA
TACCGCTGGGGTTTCTCCTATGCCTctataaaagttttttcttacTTGTT
GGTAGGATTTATCTCCTTGTTTGTGTGCTCATGACTTTTTAACTTGTTTT
CATCTTCTCACATTTTTCTTGTAGTATTCACTCAATCAATAAATTCAGGA
CTAAGAAGTTAGAAAGTAACCCACAACACGCCAAGGAGCATGTACAACTC
ATAAAACATTGTACAGAAGCTCTgctcaaaaaagaaaagttaaaacgaaa
attaaaaccgaaaatcaaaacagaaaaacACGTAAGCAAAAATGGCCATA
ACGTTGATACCGTGCGAAGTTCAAGATGGCATCAAAATGTTTTGGTCTAA
CGGAGGATTTAGACATTGTCAACCTAATTGTGATCCGAAAACAGGATATT
GGGCAGACACTGTGCCTTGTAGACATTGTTGCTTGCAAGAATCTCCTGTT
GACCCGCCAGAGCCTGGAAATGGCGATCTCACCACATGGTTGACAATTGG
ATTTGGGCTTCTTGCTCTTCTTGTGGTACTTGCAATCGCCGCTTATTTAT
ACAGAACCCGAGAAAGACGAAGAAGACGAGGCGAGCCAATCAATGCGGAA
GATCCAGGCGTCGGAGACCGAGGAAACCTCAGCTATGCATTATAACACTC
CCTGTATCGCACCCCTGCGTCATAGACCTGGTGGAAACCTCTAGTCAGTG
GGAAGAAAACCCAATGAAAAGAATATCATTTAAGACCTTCACCAATGTAG
AACAGTTGGTTTTTTCACAACCCTTGAAATATAGCTCCCTTAATTTAACC
CACTGACTACAAATCTCCCACTGGTTAATTTGAGACGGGGGTGTTGTATA
CTAGAACAAGAATATCGCTTCTGGATGCCCTTTTTTCACCGATGAAAGAG
ACAAAAACGGAAATCATAAATGAATATTGCTTCTGGTTGTCCTATATTTG
AATGCTCCCATGTTATCGCTGTCGCAGCTCTctgaaacgagatgaaaaac
tTTGTTTACAAATGACCTTAGGGTGCTGGCATctactaacggattcgtgc
ttcCTATCccctgggggggggggaactTAGGCAAATAGAGGGGACGggat
gtgccgcccttaagggtccctttttggacttccaaaggcccgctaagggt
cggaaaaatcagaaaatcaaatttcagtcccagtaaggggcggaaaaata
ggaaaatttcaactttttacccactgaaagatcgaaatttggtcaaaatt
ggtcaaattagtcccgctaagggtcggaaaaatcagaaaatcaaatttca
gtcccagtaagggtcggaaaaataggaaaatttcaactttttacccactg
aaagatcgaaatttggtcaaaattggtcaaattagtcccgctaagggtct
taaaattcccaaaattttcctttgttttctcctttttagtcccggtaagg
gttcaaagttcgaaagtcgggcggctaCCCCCCCcatcagctcgcaaccc
tagtaccccccgggttcCTATCAACTACCTtaggttttgtagaggtctgt
gattcagattAAAATGACATTAGACAAGAATTTGGTCAAAAGACTTGAAA
AGAGTacaaagagagagagagagagagagagagagtttgaatgaaaacat
tcaTAACACCATTGAGTTTCAGAGGTAACGAAACCCTGACTAATGAAATA
ATTTATATTTCTTATTATCACGTTGATATTTCAATCAATCTAACTTTTTC
CTGAGCAttttgcccgggggggggggN Run BLAST on NCBI protein sequence of TCONS_00006409-protein >TCONS_00006409-protein ID=TCONS_00006409-protein|Name=TCONS_00006409-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MAITLIPCEVQDGIKMFWSNGGFRHCQPNCDPKTGYWADTVPCRHCCLQE
SPVDPPEPGNGDLTTWLTIGFGLLALLVVLAIAAYLYRTRERRRRRGEPI
NAEDPGVGDRGNLSYAL Run BLAST on NCBI transcript from alignment at sc0000067:245774..248524+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006409 ID=TCONS_00006409|Name=TCONS_00006409|organism=Clytia hemisphaerica|type=transcript|length=2751bp|location=Sequence derived from alignment at sc0000067:245774..248524+ (Clytia hemisphaerica)
ATCATTTCATTGATCAATTGCTCAGATTAGACCTCAGTTACTTGATCGTC
TTGACTAGAGGGAGAGCCCTGGAAGACCtcgaatatattttttatttgtt
ttcacttATCTTGATATTTGTGTTTATAATTTACTGTGCTTTACGATATT
TACACTACAATATGGTTACAGAGTAATTCAGTAATGATTCTTGGCTATCT
TTCGTGGTCATGACGAGAGAGCAAAACTTTGTTGTGATTGTGGGGACAGA
TACCGCTGGGGTTTCTCCTATGCCTctataaaagttttttcttacTTGTT
GGTAGGATTTATCTCCTTGTTTGTGTGCTCATGACTTTTTAACTTGTTTT
CATCTTCTCACATTTTTCTTGTAGTATTCACTCAATCAATAAATTCAGGA
CTAAGAAGTTAGAAAGTAACCCACAACACGCCAAGGAGCATGTACAACTC
ATAAAACATTGTACAGAAGCTCTgctcaaaaaagaaaagttaaaacgaaa
attaaaaccgaaaatcaaaacagaaaaacACGTAAGCAAAAATGGCCATA
ACGTTGATACCGTGCGAAGTTCAAGATGGCATCAAAATGTTTTGGTCTAA
CGGAGGATTTAGACATTGTCAACCTAATTGTGATCCGAAAACAGGATATT
GGGCAGACACTGTGCCTTGTAGACATTGTTGCTTGCAAGAATCTCCTGTT
GACCCGCCAGAGCCTGGTAAaaagataatattatattgatTCCACCAAAA
GATTTCGGGTGGAATGGAAATCACTGTTTTGAATTATATTCACTTCATTT
TACTCTTTACTCGTTAGTCTAACTGCATCAGAGGAATTTCAAGGACCCAG
AAACAAACTGGATACTGTTTTTAACTTTAAGCCTTTCTTTAGGTCATTAA
TTTATATGTTTATGTTCATTAGGaacttttaataacatttaaTTACGTTT
TTAGGAAATGGCGATCTCACCACATGGTTGACAATTGGATTTGGGCTTCT
TGCTCTTCTTGTGGTACTTGCAATCGCCGCTTATTTATACAGAACCCGAG
GTATGTAAAAATTTGGGAGTCACAAAGAAGAAATTTCGCTACCCAAAGTT
TAAGTAATTTTTCTCAACAATTTCCCCCGATTCATTAACTCGTTATCAGC
AAAAAGAACAGGGTCGAGCACGATTATCTAGATGAGTGACCAAGCCTTAG
CCTAGCCCTGAAGTTTTCTCTCTTTCTCTGATTTACCTCGATAAATAGCT
GAATACTTTAAAAAACTCTCATTGTAGGCCAAAGCTcgaaaagtgcaaat
acatctTTCAATTTATGACAAGCATAAAGATTCGGAACATTCAAGTTTCT
ATTGATCTTTTCCCGCTAATAATAAATTTGGGCAAAGCAGAAAGTCGGTT
ATCAAAACTAGGTCTAATGTACGATAGCATCATATTTTCGCCTTAGGCTA
TATCCACACAGTGATGGAATGGGAAAATGAACAAAGACCAGTAAGAATTA
TAAAAATGATCTTAATATTTCACTTTCTATCAACAGAAAGACGAAGAAGA
CGAGGCGAGCCAATCAATGCGGAAGATCCAGGCGTCGGAGACCGAGGAAA
CCTCAGCTATGCATTATAACACTCCCTGTATCGCACCCCTGCGTCATAGA
CCTGGTGGAAACCTCTAGTCAGTGGGAAGAAAACCCAATGAAAAGAATAT
CATTTAAGACCTTCACCAATGTAGAACAGTTGGTTTTTTCACAACCCTTG
AAATATAGCTCCCTTAATTTAACCCACTGACTACAAATCTCCCACTGGTT
AATTTGAGACGGGGGTGTTGTATACTAGAACAAGAATATCGCTTCTGGAT
GCCCTTTTTTCACCGATGAAAGAGACAAAAACGGAAATCATAAATGAATA
TTGCTTCTGGTTGTCCTATATTTGAATGCTCCCATGTTATCGCTGTCGCA
GCTCTctgaaacgagatgaaaaactTTGTTTACAAATGACCTTAGGGTGC
TGGCATctactaacggattcgtgcttcCTATCccctgggggggggggaac
tTAGGCAAATAGAGGGGACGggatgtgccgcccttaagggtccctttttg
gacttccaaaggcccgctaagggtcggaaaaatcagaaaatcaaatttca
gtcccagtaaggggcggaaaaataggaaaatttcaactttttacccactg
aaagatcgaaatttggtcaaaattggtcaaattagtcccgctaagggtcg
gaaaaatcagaaaatcaaatttcagtcccagtaagggtcggaaaaatagg
aaaatttcaactttttacccactgaaagatcgaaatttggtcaaaattgg
tcaaattagtcccgctaagggtcttaaaattcccaaaattttcctttgtt
ttctcctttttagtcccggtaagggttcaaagttcgaaagtcgggcggct
aCCCCCCCcatcagctcgcaaccctagtaccccccgggttcCTATCAACT
ACCTtaggttttgtagaggtctgtgattcagattAAAATGACATTAGACA
AGAATTTGGTCAAAAGACTTGAAAAGAGTacaaagagagagagagagaga
gagagagagtttgaatgaaaacattcaTAACACCATTGAGTTTCAGAGGT
AACGAAACCCTGACTAATGAAATAATTTATATTTCTTATTATCACGTTGA
TATTTCAATCAATCTAACTTTTTCCTGAGCAttttgcccggggggggggg
N Coding sequence (CDS) from alignment at sc0000067:245774..248524+ >TCONS_00006409 ID=TCONS_00006409|Name=TCONS_00006409|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at sc0000067:245774..248524+ (Clytia hemisphaerica)
ATGGCCATAACGTTGATACCGTGCGAAGTTCAAGATGGCATCAAAATGTT
TTGGTCTAACGGAGGATTTAGACATTGTCAACCTAATTGTGATCCGAAAA
CAGGATATTGGGCAGACACTGTGCCTTGTAGACATTGTTGCTTGCAAGAA
TCTCCTGTTGACCCGCCAGAGCCTGGAAATGGCGATCTCACCACATGGTT
GACAATTGGATTTGGGCTTCTTGCTCTTCTTGTGGTACTTGCAATCGCCG
CTTATTTATACAGAACCCGAGAAAGACGAAGAAGACGAGGCGAGCCAATC
AATGCGGAAGATCCAGGCGTCGGAGACCGAGGAAACCTCAGCTATGCATT
ATAAATGGCCATAACGTTGATACCGTGCGAAGTTCAAGATGGCATCAAAA
TGTTTTGGTCTAACGGAGGATTTAGACATTGTCAACCTAATTGTGATCCG
AAAACAGGATATTGGGCAGACACTGTGCCTTGTAGACATTGTTGCTTGCA
AGAATCTCCTGTTGACCCGCCAGAGCCTGGAAATGGCGATCTCACCACAT
GGTTGACAATTGGATTTGGGCTTCTTGCTCTTCTTGTGGTACTTGCAATC
GCCGCTTATTTATACAGAACCCGAGAAAGACGAAGAAGACGAGGCGAGCC
AATCAATGCGGAAGATCCAGGCGTCGGAGACCGAGGAAACCTCAGCTATG
CATTATAAATGGCCATAACGTTGATACCGTGCGAAGTTCAAGATGGCATC
AAAATGTTTTGGTCTAACGGAGGATTTAGACATTGTCAACCTAATTGTGA
TCCGAAAACAGGATATTGGGCAGACACTGTGCCTTGTAGACATTGTTGCT
TGCAAGAATCTCCTGTTGACCCGCCAGAGCCTGGAAATGGCGATCTCACC
ACATGGTTGACAATTGGATTTGGGCTTCTTGCTCTTCTTGTGGTACTTGC
AATCGCCGCTTATTTATACAGAACCCGAGAAAGACGAAGAAGACGAGGCG
AGCCAATCAATGCGGAAGATCCAGGCGTCGGAGACCGAGGAAACCTCAGC
TATGCATTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006409-exon-sc0000067-1491911889:245774..246489 | TCONS_00006409-exon-sc0000067-1491911889:245774..246489 | Clytia hemisphaerica | exon |
| TCONS_00006409-exon-sc0000067-1510915933:245774..246489 | TCONS_00006409-exon-sc0000067-1510915933:245774..246489 | Clytia hemisphaerica | exon |
| TCONS_00006409-exon-sc0000067-1575043694:245774..246489 | TCONS_00006409-exon-sc0000067-1575043694:245774..246489 | Clytia hemisphaerica | exon |
| TCONS_00006409-exon-sc0000067-1491911889:246728..246823 | TCONS_00006409-exon-sc0000067-1491911889:246728..246823 | Clytia hemisphaerica | exon |
| TCONS_00006409-exon-sc0000067-1510915933:246728..246823 | TCONS_00006409-exon-sc0000067-1510915933:246728..246823 | Clytia hemisphaerica | exon |
| TCONS_00006409-exon-sc0000067-1575043694:246728..246823 | TCONS_00006409-exon-sc0000067-1575043694:246728..246823 | Clytia hemisphaerica | exon |
| TCONS_00006409-exon-sc0000067-1491911889:247310..248524 | TCONS_00006409-exon-sc0000067-1491911889:247310..248524 | Clytia hemisphaerica | exon |
| TCONS_00006409-exon-sc0000067-1510915933:247310..248524 | TCONS_00006409-exon-sc0000067-1510915933:247310..248524 | Clytia hemisphaerica | exon |
| TCONS_00006409-exon-sc0000067-1575043694:247310..248524 | TCONS_00006409-exon-sc0000067-1575043694:247310..248524 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:245774..248524 + |
Blast
The following BLAST results are available for this feature:
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