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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006403 ID=TCONS_00006403|Name=TCONS_00006403|organism=Clytia hemisphaerica|type=transcript|length=2603bp
gtttgtaagtgcactttatagttttgattcccattgaagaatcatattct
ggttttcatgttattagatgctgttttagagctttaggtctacactgtta
AGATAGGTGTATGTTTGAAAATTCCTGCTGCATAAGCATacgtatttttt
tatttaagaacaAGCATAAGGCATGGATGTGATGGGCAAAGTATTTTAAT
CAAGCCTTTGTGAACTCTAAAActtttaggaaattgcacaaaacttgtga
aataagaacatctttaggcttcaaaatgttcaaactcaaaaagtaaagaa
catGAGAAATTAAGAACGTCCGAAGGCTATTTTTGACGCGGTGCTTATAA
CAATTTATGATTATGTATTATTTCTATTGTGTGCTGTCGTTTTTTGGAAT
TTCCCTTTTAATGTCAAGGGTTATTTACCATCGATCTtttatgttttcaa
aaaatgaaaggtGAACGAGACACTCATTTCTAAAATCGCTGCCGAGAGGA
AAGGAGCTTGAAAGCATCTTtctttaacaatatttttactttaatcAAGA
AACTTATATCACAAATTAAGAGGATTTGTAGATTATAATCATGTCTTTCG
GCTGCGGTTGCGACACAAGAGCGCCCTTGGATAAGTCCATAGTGAACact
tttttcctgatttttgtcttGTTTACTTGTTTGGTCGCAGCAAAACCGTC
TGGTGTAATCATAAACAATTCTAATAAGCATAGTACGAAACAGACAGGAC
CTTGGAAAGACGGAAGGTGTATGATTGGGAAAGATGGCAGACCAGAGTTT
TACACAAAACAAGGCCATCAACCTTGTGTGTTGAACGATGGATCACATAA
TTGTCCATTGACGGAAATGAAGACCATGAATACTGAGTACCCTCACTGTT
TCATCTGTTGTTGGAGCAAGATAGCAGAAACAAAATGTCCAACGTTACCA
CAGACGACCACGCCACCCGCCTTAAATGTCACGAAGCAGGAGACGAGAGG
AGAAGAGCAAACGTCTCCTGAACAGACTGCACCTGGATGTAAAAAAGACG
TCCTCTTCACAGCTGGTGTATCATTTCTGATACTCTTCTTATGTTCACTT
GCCCAATTCAAATACCATCAGAATCAACGTCTCTCTTTAGTCAAAGAGAA
TGATAATTTGAAAGAAACATTGACAAATATAATTCCTGaaaatccCGTCC
AAGACCATTTTCTTGGAGAAAACGAGCCAATCAGGAATGACGTAGCAGCC
GGCGATTATGACGTCAACCAAGGCCTGACGGACGAGCATGTTGACGTACC
TTCAGGGACGAAGAAGTCGTTTCATTTTGATACGAATGATGTTGAAGAAG
GAGAAAATCAAAACGATGAAGGAATCGGCTCCAGTGAAGCTTCAAGTAGA
GAATCCATTTGCTGACAAATGAAATGGACGAAAAATGAAACACAAATATG
AAAGCAAAAGAACGAAAGTGAAATGAATTTCTTATGGTTGCGGCATCAAT
CAAATCTCCAACTAAGACCtagtccaggagctggagctcaactacttttt
gcctttactaattctgatgggggaaaaagtagagtcctatcgcagcgcca
tcattcaaatcagaaagcgaagatagtatacggcagactTTCTGACTAAC
TAAGACCGGAAAGATGACTACCTGCATTACATTCTTCAACGCCCTTCAGA
AGCACGCCCGGGCAAATATACAAAgacattcattcattcattcaagtTAG
TTTTGGGAAATGTAGCATTGTGAATTCAAGAACACTGTATTATAATCGAA
TTTCAACGAGAtaagtatttcaatttttttaccatATGACTAAATTTTAT
TAGAGACAAGGTTGGTCCCAGGAAgacttgatgattttttttgggaaaGT
TTTCGAAAGATCCTAGAGAGTGGTAAATTTAAACCAAATTTAACTTTGGG
ACTTCTTGTTCATAACCCCTACCCACTACTACccaactttcctttttttt
tggcATCAAACTTTCCTGACTCCTGACTAGCAAAAGTTAAGTAtgtatat
tttctattttttaacaaattttatttaattagtttttttctatccaaata
ataattttattaaatttctgACAGGTTAcattttaacacccctgtctcag
tgatcaGGTTGGAATGGATCGTGGAGGTGGATTTTTTATGGAAGAGGATC
CCACCAAGTCTGTGATAAAGGGTTGTTCTCGGACACACCTCCTCTTCTCC
CAGTAATTTCCAAAGGGACAATCCCCTTTGTACCTCCCCCTCTAACGTTC
GTGATGACTCATTCTCCTCCCATTAGTTTTGAATTATGTAGTTTGTTTAT
AAGAAGCAATAATGTGTTAATGAATTATGTTTCTTATAAATTAAAACTTA
TTAAAGAAAGGGGGTTCCCCTGTGATGTTATGATGGTTTTTTTTTACTCT
CTCGTTATGATATAGAGAAATAAGAGTATAATCAATCATTTGAGACGTTG
AACTTTAGATAGTACATTGACATGTTGTTAAATTTTCTATTCaatatttg
ataatattttgatataatttttgaaaaagattaaaATATGAAAGATAATC
ACG Run BLAST on NCBI transcript from alignment at sc0000067:227850..231437+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006403 ID=TCONS_00006403|Name=TCONS_00006403|organism=Clytia hemisphaerica|type=transcript|length=3588bp|location=Sequence derived from alignment at sc0000067:227850..231437+ (Clytia hemisphaerica)
gtttgtaagtgcactttatagttttgattcccattgaagaatcatattct
ggttttcatgttattagatgctgttttagagctttaggtctacactgtta
AGATAGGTGTATGTTTGAAAATTCCTGCTGCATAAGCATacgtatttttt
tatttaagaacaAGCATAAGGCATGGATGTGATGGGCAAAGTATTTTAAT
CAAGCCTTTGTGAACTCTAAAActtttaggaaattgcacaaaacttgtga
aataagaacatctttaggcttcaaaatgttcaaactcaaaaagtaaagaa
catGAGAAATTAAGAACGTCCGAAGGCTATTTTTGACGCGGTGCTTATAA
CAATTTATGATTATGTATTATTTCTATTGTGTGCTGTCGTTTTTTGGAAT
TTCCCTTTTAATGTCAAGGGTTATTTACCATCGATCTtttatgttttcaa
aaaatgaaaggtGAACGAGACACTCATTTCTAAAATCGCTGCCGAGAGGA
AAGGAGCTTGAAAGCATCTTtctttaacaatatttttactttaatcAAGA
AACTTATATCACAAATTAAGAGGATTTGTAGATTATAATCATGTCTTTCG
GCTGCGGTTGCGACACAAGAGCGCCCTTGGATAAGTCCATAGTGAACact
tttttcctgatttttgtcttGTTTACTTGTTTGGTCGCAGCAAAACCGTC
TGGTGTAATCATAAACAATTCTAATAAGCATAGTACGAAACAGACAGGAC
CTTGGAAAGACGGAAGGTGTATGATTGGGAAAGATGGCAGACCAGAGTTT
TACACAAAACAAGGCCATCAACCTTGTGTGTTGAACGATGGATCACATAA
TTGTCCATTGACGGAAATGAAGACCATGAATACTGAGTACCCTCACTGTT
TCATCTGTTGTTGGAGCAAGATAGCAGGTAAGGCCGTGAGCAATCACTTT
GATGTCTTTGTATTTCATTACAGTCTAGTGTTATCTATATGACCGCCGAC
ATGTTACGTATATCTGTACCTTTTTCAATCTAAATCAAAATTAGGTTACC
TTGGAAATTGATTGAATTTCTATGTGTATTAACTTTACCATCCCTTCTTT
ATCTTAAAAGAGCTTTTCTTTGTATGTTGATAATGCTTCGAGGAAATGGT
TTTCTAGTTGTTCACTTAAACCAGAGacctgttttgtttgttttgaagag
AGTTGATTTTGTAAGTTGATGATGTTTCTCGTGTTACACTTAcgccaaaa
gttaaaaaataaggAGATAACCCCGATCGAGACCCCATAGCACTTAAACT
ATTCTttgaaaaaacctttgaaaataaaacctgTTTTTTTACCCCATAAA
GTCGGTGGGGATGTTTTTAcagatttattttcaattttgaagaaatagTT
ACgatcccaggggggggggggggtttttttttaaaatttaaaaaaagggg
gggggggtttttttaatttttttttagatttttgaaaaaagggggggggg
gtttttttaatttttttttttaaattttttttttaattttgaaaaaaatt
gggcggccccggggggggggggggggtggggtaCTCAAAGTAATTAATCA
GTTTTGGgcaacattttggaaaaaatttaccttttttatCTTAATATGGA
CGagagttttcaagaaaatgcaagGGTCGATTTTATGTCCAATGCTCACC
TGCTTCTTAACTGCATTATTTTATTTCTGCTGGCTAAAAAATTCACCGGT
CACTGAGAGAGGACTTTATTTTCTAATCTTATATCTCGTAATGTAATTTC
ACAAATATTTTTCCTTAGAAACAAAATGTCCAACGTTACCACAGACGACC
ACGCCACCCGCCTTAAATGTCACGAAGCAGGAGACGAGAGGAGAAGAGCA
AACGTCTCCTGAACAGACTGCACCTGGATGTAAAAAAGACGTCCTCTTCA
CAGCTGGTGTATCATTTCTGATACTCTTCTTATGTTCACTTGCCCAATTC
AAATACCATCAGAATCAACGTCTCTCTTTAGTCAAAGAGAATGATAATTT
GAAAGAAACATTGACAAATATAATTCCTGGTAAGATTCAAAGTACAATAA
TTACAGTACAACCTCTCCAAGTGTTCCGACCGAGAAAAAGGTTACCAATt
actgtaaatatttttcattttagaaaatccCGTCCAAGACCATTTTCTTG
GAGAAAACGAGCCAATCAGGAATGACGTAGCAGCCGGCGATTATGACGTC
AACCAAGGCCTGACGGACGAGCATGTTGACGTACCTTCAGGGACGAAGAA
GTCGTTTCATTTTGATACGAATGATGTTGAAGAAGGAGAAAATCAAAACG
ATGAAGGAATCGGCTCCAGTGAAGCTTCAAGTAGAGAATCCATTTGCTGA
CAAATGAAATGGACGAAAAATGAAACACAAATATGAAAGCAAAAGAACGA
AAGTGAAATGAATTTCTTATGGTTGCGGCATCAATCAAATCTCCAACTAA
GACCtagtccaggagctggagctcaactactttttgcctttactaattct
gatgggggaaaaagtagagtcctatcgcagcgccatcattcaaatcagaa
agcgaagatagtatacggcagactTTCTGACTAACTAAGACCGGAAAGAT
GACTACCTGCATTACATTCTTCAACGCCCTTCAGAAGCACGCCCGGGCAA
ATATACAAAgacattcattcattcattcaagtTAGTTTTGGGAAATGTAG
CATTGTGAATTCAAGAACACTGTATTATAATCGAATTTCAACGAGAtaag
tatttcaatttttttaccatATGACTAAATTTTATTAGAGACAAGGTTGG
TCCCAGGAAgacttgatgattttttttgggaaaGTTTTCGAAAGATCCTA
GAGAGTGGTAAATTTAAACCAAATTTAACTTTGGGACTTCTTGTTCATAA
CCCCTACCCACTACTACccaactttcctttttttttggcATCAAACTTTC
CTGACTCCTGACTAGCAAAAGTTAAGTAtgtatattttctattttttaac
aaattttatttaattagtttttttctatccaaataataattttattaaat
ttctgACAGGTTAcattttaacacccctgtctcagtgatcaGGTTGGAAT
GGATCGTGGAGGTGGATTTTTTATGGAAGAGGATCCCACCAAGTCTGTGA
TAAAGGGTTGTTCTCGGACACACCTCCTCTTCTCCCAGTAATTTCCAAAG
GGACAATCCCCTTTGTACCTCCCCCTCTAACGTTCGTGATGACTCATTCT
CCTCCCATTAGTTTTGAATTATGTAGTTTGTTTATAAGAAGCAATAATGT
GTTAATGAATTATGTTTCTTATAAATTAAAACTTATTAAAGAAAGGGGGT
TCCCCTGTGATGTTATGATGGTTTTTTTTTACTCTCTCGTTATGATATAG
AGAAATAAGAGTATAATCAATCATTTGAGACGTTGAACTTTAGATAGTAC
ATTGACATGTTGTTAAATTTTCTATTCaatatttgataatattttgatat
aatttttgaaaaagattaaaATATGAAAGATAATCACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006403-exon-sc0000067-1491911889:227850..228776 | TCONS_00006403-exon-sc0000067-1491911889:227850..228776 | Clytia hemisphaerica | exon |
| TCONS_00006403-exon-sc0000067-1510915933:227850..228776 | TCONS_00006403-exon-sc0000067-1510915933:227850..228776 | Clytia hemisphaerica | exon |
| TCONS_00006403-exon-sc0000067-1575043694:227850..228776 | TCONS_00006403-exon-sc0000067-1575043694:227850..228776 | Clytia hemisphaerica | exon |
| TCONS_00006403-exon-sc0000067-1491911889:229668..229928 | TCONS_00006403-exon-sc0000067-1491911889:229668..229928 | Clytia hemisphaerica | exon |
| TCONS_00006403-exon-sc0000067-1510915933:229668..229928 | TCONS_00006403-exon-sc0000067-1510915933:229668..229928 | Clytia hemisphaerica | exon |
| TCONS_00006403-exon-sc0000067-1575043694:229668..229928 | TCONS_00006403-exon-sc0000067-1575043694:229668..229928 | Clytia hemisphaerica | exon |
| TCONS_00006403-exon-sc0000067-1491911889:230023..231437 | TCONS_00006403-exon-sc0000067-1491911889:230023..231437 | Clytia hemisphaerica | exon |
| TCONS_00006403-exon-sc0000067-1510915933:230023..231437 | TCONS_00006403-exon-sc0000067-1510915933:230023..231437 | Clytia hemisphaerica | exon |
| TCONS_00006403-exon-sc0000067-1575043694:230023..231437 | TCONS_00006403-exon-sc0000067-1575043694:230023..231437 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:227850..231437 + |
Blast
The following BLAST results are available for this feature:
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