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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006391 ID=TCONS_00006391|Name=TCONS_00006391|organism=Clytia hemisphaerica|type=transcript|length=4001bp
GAACAGGGAAGATGTGCTGTCAAATTGCTTGAAGGTTTTcaatttatctt
tttctttagataaataaaaatatcttagaTGTAAAATGCAAGAAATCGAA
AACTATCCAATGGTTAGGTTGAGGAAAATCCGAGAAACATCCTTGAAAAG
TGACCCCTCAAACTTCATCTATCTGTCTTCTACAAAGCCTACAATAATAG
GCCGGGTCATAGCTGATGATGTCAACACACGAATGCTATCTAAATCGACA
CCATTAATGATCTCTAGAAGGCATGCCACTgtcacttttgaaaatggaaa
gGTGTTTGTTGTTGATCACAGCAGCTTGAATGGAGTGTACATCAGGAATA
AAAGAATTAGATCTGGTGTGAAAGCGGAGGTCAAAATTGGTGATCGGGTT
GCATTTGGTTGTGGTATTGATAAGGGCAGCCCACCTGAATTTGAATACTA
TGTTGAAAATGCTCAATCTAAACACAAAACCGCAAATCCTAACTTATCAG
CTTCACCTTTAAaacgaaaaagattttttgagccACCATCAATTACCATC
ATTGAATCCAATACTGCGCAAATCAAAGAGCAAGAGCAGAAAATAAAATC
TCTTAGTGAATCTTTGCAAGAAAAAGAGAAACAACATAAGAATATGCTTA
GTCAATTTGAGGAAACTCAAAGTGATCTTTTGAAACAACTTGAAAATTCC
AAACTTCAGCTTGAGAATGAACGTCAAGAAGCTGAACTACATCTGAAGGG
TCTACTTGAAAATCAATTACATGAACAGGAATCAGCTCTAAAATCTCAAT
TTGACATGCAAATTAGGGatcttgaacttgaaaaaactcTTGTTGAGACA
AATCTTCAACAAGAACTATCCAAAAAGCTCTCAGAAAAAGATGAAGCTTA
TCAAAAAGAGCTAgagaaacaaaaacttgagcttGAAACTACCATCTATG
ccaaagaaagtgaaaaaagtaATCTTCTCAGCGAATTAAGGGCCAAAGAG
CAAGTCATTGAAAAGTATCAATCTGTTGAAGAAAATCAGAAGCAACTTGA
ACAATGTTTACAAGAACTACGAGATGAAATAAGTGAGAAAGAAAACCAAT
TGGAACAACAAAAGGAAATCACTAAAAAAGTTGAGATTGATGCCAAACAG
AGTGCCATGCTATGCATGGAAGATGAATTTTCATGTATCATATGCTCACA
TTACTTTATTGAGGCAACAACATTACCTTGTGCTCACACATTCTGTTCAT
TCTGTCTTTGGGAAtggttaaaaaagaaaaagaattgccCTGTATGCAGA
CGTAAAATGAAAGGAAAAGCAGTTCGATCGTTAGTCCTTGACAGTTGTGT
AGAGAAACTGGTTGAAACCTTTTCTGACGCAGAAAAAGAGGCTCGTGTTA
CGGAGCAAACGAAACGTGAAACAATTATAAAGAAAGATGAATCTTCGGAA
GGTAATTTATCCCCAAAAGTAGAGGAAGTTGAGGGTGATTTGATTCCTCT
GCCTACTGCAAATAACAGGCCTGGAAACCGTGAAATTATTCAAATAGATT
GAAAGTCTTCTATTATTTTATTGGTATAAAATTgaattcaaacaaaaatt
cataaaacatGAAAGCTAACAAATTTCACCATTCATATTATTTAGGGAGT
CAATTTTCTGACCGATTTAGAGTTTTTTAAACGAAagttttcttatgttt
ttaaAGAGGTattatatatttgaaaaaataggtCTTACAAGGTTTTTATT
ATGTATATAGCATTGGTATGTTCATATTTGTCACAACATtacaaaagaga
aaaatatttagtaAAACTCATAACAATACTTCATGATTGAAGATGAGTAT
CGAAAACGAATTTTTGAAGcgttatttttgttaatttattaAAATGCATG
AGTTAAAGCAAACTAACTAAAAACATGATCATttatgaaatattcaaaaa
aatattttagattgaATCATTTTGGTAGTTTGGTAGGTAGTTGTTGTTCT
TCGGTTTTTTCTCAGTGTTGATTTAGAAAAAGGATTTAGGGCTTGATTTT
CCCTGTTGTATAACTTAAAATTCTTTTGTGTCTTGTTTATTTCTTTGTCT
TAGAGAAAAAATTTTATCGTCTACAAAAACACTGAAAGATAACACTAGta
gtttgaaaatgtttttttcaaaacatcgtAAAACGTTGAACTGGTTTCGT
TCGTTGACTGCACGTCTCTTCATCATCACTTCAACAATATCTTCGGATTG
AGATATTAAACACACATTTCCTAAAAAAAATGTGATCGCCTAACAAATTA
TCGTAAAgtatcatttcaatttcaatgtaCTCAAAAAGTACAAAACCTGA
ACAATTAGGACAGCCTAAGTTCCTTGATCTATCAATTTAACACATACAAA
GCGTCTAGCAATACATACTCTAATCTTTGTTATTTCGTTAAGTCTTTGAG
AGGGAAAAAGGTTGATTAATACTTGGAtcgaatcataaaaaagaactTCT
TGTTTCCTGTGCCATatgattcaaaaataaatttagctGGGGAAAAGAGA
ATTTACACTCCGTTCTGTGGAAAGGTGCGAAATTTAACGATATTTCTACG
CATTCTAAGGCGTCCAGAACAAAGACCTCAAAAGTTCACTTGCTGTACTG
ATGTATGTCTTTGTTTTGGATGCCACGCAGAACTAGaagattttaatgtt
ttcataTTTCTCTTTTAGATGCCGAAGGTATTCGAGAATTATTCCACAGA
ATTGAAGATTCTGATGTAGATGATACGCCCGCACGATCTAACGATCGAAA
TAATGCTCAAAATCGAAACGGGCGACGTGATGGTGGATATCGAAGGCGCT
CTCGATCCAGGTCGCCCAGAAATCACCGTCACCGCCCTTATCATGACGGG
CGTTACAACAATCAGAACAATAACTTCGTCAACAACATGTACCCGCCGCA
AGCACAAGCGCGCTATCACCAAGAGCGTTCAGGCGGTGGCAATTTCCACA
ATTATTTTACGAATGGTTTTCACAGTCACTTAACAAACCAATATGCCAAT
CATCACAACAATGCACGCTGTTTTAATTGCGGTGGACTAGACCATATTGC
ACGTTACTGTCCCAGAGGTCCACGATAGATGTGTCAATGtctgaaacttc
tttttttttgtaaataaccCATTGATATTTGTAGcttaaaaaaataaagt
gtacataggaaattgtatttttgaaacGGAAAGGGCAAAATTGAAAAGGT
GcttggttttgatttttgtacGGGTTTTACTGTATATGTACTGGAAAAGC
AAAGTCTTTTCACTTTCTGTCTATGCAAATATTACCTAATTTGTGTTTAG
CTAAAGTGATTTCTTGATAAAGTTTGTCTCTATGTGTATCTTTATCTGTC
Gataaaattcgaattagatagcggttgattgctcgttgaaaagataatca
gaagtaaatagaaaaatacaaagacTGAAAAATGAAcatggaaaatgaag
aaaaaaacacttcttGTAGAATTGTACATGAATTGTACTATTATCACTCT
CTGaaataatttctaaaaattttccaTCAAGTCAAAAAATACAGATTAGA
ACATTTGTCTGGTTATGAGTCAatccttttcaatttttatcttcattctc
caaagttttttgaaaatatttctttacgTGAATACCATTTTCATCGACTA
CAAAGCCGCTATTTGAGGATCGATACAAGAAGTTACCGTTTTCTCCGCTG
CCGAGTTTTTTTAGGCAGACTTTTTCTTTAGTAAGGTGATGGAAATactc
taaaaaatatttttctttctataaATTATCTTGTGTTTATATTATTCTAA
TAATCTTATTATATCTTATTCGAGTTATCCTTAGAAATTAATAGGGATGT
AATCATTATTTCAAGCTTTTTATGATGTTGTCATGAGCAATTTCATTGGC
CataatttgtttatttaaaaaaagttcttcATATTTTACTCATTACATCa
a Run BLAST on NCBI transcript from alignment at sc0000067:153988..159031+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006391 ID=TCONS_00006391|Name=TCONS_00006391|organism=Clytia hemisphaerica|type=transcript|length=5044bp|location=Sequence derived from alignment at sc0000067:153988..159031+ (Clytia hemisphaerica)
GAACAGGGAAGATGTGCTGTCAAATTGCTTGAAGGTTTTcaatttatctt
tttctttagataaataaaaatatcttagaTGTAAAATGCAAGAAATCGAA
AACTATCCAATGGTTAGGTTGAGGAAAATCCGAGAAACATCCTTGAAAAG
TGACCCCTCAAACTTCATCTATCTGTCTTCTACAAAGCCTACAATAATAG
GCCGGGTCATAGCTGATGATGTCAACACACGAATGCTATCTAAATCGACA
CCATTAATGATCTCTAGAAGGCATGCCACTgtcacttttgaaaatggaaa
gGTGTTTGTTGTTGATCACAGCGTAAGTTTTTGAtcattcattttcattt
tacacTTTACTTGAAACATGACCGGGAAACCGAGAAAAGATAATTGTCTT
CTGATGGGGTatcagggctcgaaataacggtcagacatcggacattgtcc
aacccaaatagcttcatgaccgacccaaaaatcataattttcaagctaaa
gcaaccctgatcggacatttttgtccgacccacttgaaatcgttatttcg
agccttgggtatagttgttttaacattttttgtatAGTATATCTATCTCC
AGCAAGAAAAAATCAATCCATATTTTCAGCATATTTGTGCCAATATTTGA
TTGCACTGTACTTCAATGTTATTCTCAAGCTGAAAATTCACTTAATTTTT
TCCTGCATTTTATCACTTTCGTTTTAGGcttcttttaaaatgtttttctt
ttttaatttttcttctttgttatTTGCAAGAacacaatttcaaaattcta
atttttctcTTGGATACTGTAAACCATACTTAAAGATTGGAGGGGTACAG
TAGCTAGTTTTTATTAGATTTACAGTAAAATAAGCTGCTTATAACTCACT
TATACCCGCTTATACTGTAATTTAACCTCATAACTTCAAATTTTATTCTT
TCTACAGTAGCTACATCTATATTGTAgtttggtctaatgtcgacatcctt
cttctaattttgacacccttctttagagatgggAATAATAAAAAGGATTT
ATTCCTCTCTGATCgctacaaagtaaacaaaattagtttcaatcagtgaA
TTCGACCTTCCCATTATTCGTCAACTAACTGACGGTATAGatcttttttt
tgataatttattgTATCTTTTTTTTCAGAGCTTGAATGGAGTGTACATCA
GGAATAAAAGAATTAGATCTGGTGTGAAAGCGGAGGTCAAAATTGGTGAT
CGGGTTGCATTTGGTTGTGGTATTGATAAGGGCAGCCCACCTGAATTTGA
ATACTATGTTGAAAATGCTCAATCTAAACACAAAACCGCAAATCCTAACT
TATCAGCTTCACCTTTAAaacgaaaaagattttttgagccACCATCAATT
ACCATCATTGAATCCAATACTGCGCAAATCAAAGAGCAAGAGCAGAAAAT
AAAATCTCTTAGTGAATCTTTGCAAGAAAAAGAGAAACAACATAAGAATA
TGCTTAGTCAATTTGAGGAAACTCAAAGTGATCTTTTGAAACAACTTGAA
AATTCCAAACTTCAGCTTGAGAATGAACGTCAAGAAGCTGAACTACATCT
GAAGGGTCTACTTGAAAATCAATTACATGAACAGGAATCAGCTCTAAAAT
CTCAATTTGACATGCAAATTAGGGatcttgaacttgaaaaaactcTTGTT
GAGACAAATCTTCAACAAGAACTATCCAAAAAGCTCTCAGAAAAAGATGA
AGCTTATCAAAAAGAGCTAgagaaacaaaaacttgagcttGAAACTACCA
TCTATGccaaagaaagtgaaaaaagtaATCTTCTCAGCGAATTAAGGGCC
AAAGAGCAAGTCATTGAAAAGTATCAATCTGTTGAAGAAAATCAGAAGCA
ACTTGAACAATGTTTACAAGAACTACGAGATGAAATAAGTGAGAAAGAAA
ACCAATTGGAACAACAAAAGGAAATCACTAAAAAAGTTGAGATTGATGCC
AAACAGAGTGCCATGCTATGCATGGAAGATGAATTTTCATGTATCATATG
CTCACATTACTTTATTGAGGCAACAACATTACCTTGTGCTCACACATTCT
GTTCATTCTGTCTTTGGGAAtggttaaaaaagaaaaagaattgccCTGTA
TGCAGACGTAAAATGAAAGGAAAAGCAGTTCGATCGTTAGTCCTTGACAG
TTGTGTAGAGAAACTGGTTGAAACCTTTTCTGACGCAGAAAAAGAGGCTC
GTGTTACGGAGCAAACGAAACGTGAAACAATTATAAAGAAAGATGAATCT
TCGGAAGGTAATTTATCCCCAAAAGTAGAGGAAGTTGAGGGTGATTTGAT
TCCTCTGCCTACTGCAAATAACAGGCCTGGAAACCGTGAAATTATTCAAA
TAGATTGAAAGTCTTCTATTATTTTATTGGTATAAAATTgaattcaaaca
aaaattcataaaacatGAAAGCTAACAAATTTCACCATTCATATTATTTA
GGGAGTCAATTTTCTGACCGATTTAGAGTTTTTTAAACGAAagttttctt
atgtttttaaAGAGGTattatatatttgaaaaaataggtCTTACAAGGTT
TTTATTATGTATATAGCATTGGTATGTTCATATTTGTCACAACATtacaa
aagagaaaaatatttagtaAAACTCATAACAATACTTCATGATTGAAGAT
GAGTATCGAAAACGAATTTTTGAAGcgttatttttgttaatttattaAAA
TGCATGAGTTAAAGCAAACTAACTAAAAACATGATCATttatgaaatatt
caaaaaaatattttagattgaATCATTTTGGTAGTTTGGTAGGTAGTTGT
TGTTCTTCGGTTTTTTCTCAGTGTTGATTTAGAAAAAGGATTTAGGGCTT
GATTTTCCCTGTTGTATAACTTAAAATTCTTTTGTGTCTTGTTTATTTCT
TTGTCTTAGAGAAAAAATTTTATCGTCTACAAAAACACTGAAAGATAACA
CTAGtagtttgaaaatgtttttttcaaaacatcgtAAAACGTTGAACTGG
TTTCGTTCGTTGACTGCACGTCTCTTCATCATCACTTCAACAATATCTTC
GGATTGAGATATTAAACACACATTTCCTAAAAAAAATGTGATCGCCTAAC
AAATTATCGTAAAgtatcatttcaatttcaatgtaCTCAAAAAGTACAAA
ACCTGAACAATTAGGACAGCCTAAGTTCCTTGATCTATCAATTTAACACA
TACAAAGCGTCTAGCAATACATACTCTAATCTTTGTTATTTCGTTAAGTC
TTTGAGAGGGAAAAAGGTTGATTAATACTTGGAtcgaatcataaaaaaga
actTCTTGTTTCCTGTGCCATatgattcaaaaataaatttagctGGGGAA
AAGAGAATTTACACTCCGTTCTGTGGAAAGGTGCGAAATTTAACGATATT
TCTACGCATTCTAAGGCGTCCAGAACAAAGACCTCAAAAGTTCACTTGCT
GTACTGATGTATGTCTTTGTTTTGGATGCCACGCAGAACTAGaagatttt
aatgttttcataTTTCTCTTTTAGATGCCGAAGGTATTCGAGAATTATTC
CACAGAATTGAAGATTCTGATGTAGATGATACGCCCGCACGATCTAACGA
TCGAAATAATGCTCAAAATCGAAACGGGCGACGTGATGGTGGATATCGAA
GGCGCTCTCGATCCAGGTCGCCCAGAAATCACCGTCACCGCCCTTATCAT
GACGGGCGTTACAACAATCAGAACAATAACTTCGTCAACAACATGTACCC
GCCGCAAGCACAAGCGCGCTATCACCAAGAGCGTTCAGGCGGTGGCAATT
TCCACAATTATTTTACGAATGGTTTTCACAGTCACTTAACAAACCAATAT
GCCAATCATCACAACAATGCACGCTGTTTTAATTGCGGTGAGATCTTTGT
TTCCAATCTTAACGTCTTTCATTTTGCAATTCATTAGATCTATCCCATCG
AGATTTTAATTGATTCTAAATAAGCTATTTCTTTTAGAGTATTTCAGATA
TGTGCACTGCTGTAGTGTTTCCACTGATAATAGTTTGAGCAATGCTGAAT
AATATTCCACTCTTGTTATTTTAGGTGGACTAGACCATATTGCACGTTAC
TGTCCCAGAGGTCCACGATAGATGTGTCAATGtctgaaacttcttttttt
ttgtaaataaccCATTGATATTTGTAGcttaaaaaaataaagtgtacata
ggaaattgtatttttgaaacGGAAAGGGCAAAATTGAAAAGGTGcttggt
tttgatttttgtacGGGTTTTACTGTATATGTACTGGAAAAGCAAAGTCT
TTTCACTTTCTGTCTATGCAAATATTACCTAATTTGTGTTTAGCTAAAGT
GATTTCTTGATAAAGTTTGTCTCTATGTGTATCTTTATCTGTCGataaaa
ttcgaattagatagcggttgattgctcgttgaaaagataatcagaagtaa
atagaaaaatacaaagacTGAAAAATGAAcatggaaaatgaagaaaaaaa
cacttcttGTAGAATTGTACATGAATTGTACTATTATCACTCTCTGaaat
aatttctaaaaattttccaTCAAGTCAAAAAATACAGATTAGAACATTTG
TCTGGTTATGAGTCAatccttttcaatttttatcttcattctccaaagtt
ttttgaaaatatttctttacgTGAATACCATTTTCATCGACTACAAAGCC
GCTATTTGAGGATCGATACAAGAAGTTACCGTTTTCTCCGCTGCCGAGTT
TTTTTAGGCAGACTTTTTCTTTAGTAAGGTGATGGAAATactctaaaaaa
tatttttctttctataaATTATCTTGTGTTTATATTATTCTAATAATCTT
ATTATATCTTATTCGAGTTATCCTTAGAAATTAATAGGGATGTAATCATT
ATTTCAAGCTTTTTATGATGTTGTCATGAGCAATTTCATTGGCCataatt
tgtttatttaaaaaaagttcttcATATTTTACTCATTACATCaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006391-exon-sc0000067-1491911889:153988..154309 | TCONS_00006391-exon-sc0000067-1491911889:153988..154309 | Clytia hemisphaerica | exon |
| TCONS_00006391-exon-sc0000067-1510915933:153988..154309 | TCONS_00006391-exon-sc0000067-1510915933:153988..154309 | Clytia hemisphaerica | exon |
| TCONS_00006391-exon-sc0000067-1575043694:153988..154309 | TCONS_00006391-exon-sc0000067-1575043694:153988..154309 | Clytia hemisphaerica | exon |
| TCONS_00006391-exon-sc0000067-1491911889:155166..157924 | TCONS_00006391-exon-sc0000067-1491911889:155166..157924 | Clytia hemisphaerica | exon |
| TCONS_00006391-exon-sc0000067-1510915933:155166..157924 | TCONS_00006391-exon-sc0000067-1510915933:155166..157924 | Clytia hemisphaerica | exon |
| TCONS_00006391-exon-sc0000067-1575043694:155166..157924 | TCONS_00006391-exon-sc0000067-1575043694:155166..157924 | Clytia hemisphaerica | exon |
| TCONS_00006391-exon-sc0000067-1491911889:158112..159031 | TCONS_00006391-exon-sc0000067-1491911889:158112..159031 | Clytia hemisphaerica | exon |
| TCONS_00006391-exon-sc0000067-1510915933:158112..159031 | TCONS_00006391-exon-sc0000067-1510915933:158112..159031 | Clytia hemisphaerica | exon |
| TCONS_00006391-exon-sc0000067-1575043694:158112..159031 | TCONS_00006391-exon-sc0000067-1575043694:158112..159031 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:153988..159031 + |
Blast
BLAST of TCONS_00006391 vs. Swiss-Prot (Human)
Match: RNF8 (E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 6.875e-31 Identity = 135/468 (28.85%), Postives = 213/468 (45.51%), Query Frame = 2
Query: 158 SNFIYLSSTKPTIIGRVIADDVNTRMLSKSTPLMISRRHATV-TFENGKVFVVDHSSLNGVYIRNKRIRSGVKAEVKIGDRVAFGCGIDKGSPPEFEYYVENAQSKHKTANPNLSAS---------PLKRKRFFEPPSITIIESNTAQIKEQ-EQKIKSLS-ESLQEKEKQHKNMLSQFEETQSDLLKQLENSKLQLENERQEAELHLKGLLE-NQLHEQESALKSQFDMQIRDLELEKTLVETNLQQELSKKLSEKDEAYXXXXXXXXXXXXTTIYAKESEKSNLLSELRAKE---------------------QVIEKYQSVEENQKQLEQCLQE---LRDE-----------ISEKENQLEQQKEITKKVEIDAKQSAML-----CMEDEFSCIICSHYFIEATTLPCAHTFCSFCLWEWLKKKKNCPVCRRKMKGKAVRSLVLDSCVEKLVETFSDAEKEARVT 1402
+ ++ L +GR V +++SK PLMISR H + G+ ++D+ SLNGV++ R+ + GD + G ++ E+EY V + +T P LS L+ KR F S+ + A+ + KI +S ES Q + Q K + T SD L+ LE + G + ++H ++ A S R L++ K + L+ L ++ EK EA ++ + + E E +L S+L A++ Q +E Q ++ ++QL Q LQE L +E I K +LEQ KE +K ++ A++ +L +E+E CIICS YFIEA TL CAH+FCS+C+ EW+K+K CP+CR+ +K K SLVLD+C+ K+V S KE R+
Sbjct: 27 AGWLLLEDGCEVTVGRGFG--VTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEV--TEEDWETIYPCLSPKNDQMIEKNKELRTKRKF---SLDELAGPGAEGPSNLKSKINKVSCESGQPVKSQGK---GEVASTPSD---NLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSSASQ--RSLQMFKVTMSRILR--LKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKDFEAIIQAKNKELEQTKE--EKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTY-SLVLDNCINKMVNNLSSEVKERRIV 474
The following BLAST results are available for this feature:
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