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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006389 ID=TCONS_00006389|Name=TCONS_00006389|organism=Clytia hemisphaerica|type=transcript|length=3251bpRun BLAST on NCBI protein sequence of TCONS_00006389-protein >TCONS_00006389-protein ID=TCONS_00006389-protein|Name=TCONS_00006389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp MLDMDYEKTVQENTELKEELSHCHQQMQDISTGNLSKELKVLKKVIQNLERun BLAST on NCBI transcript from alignment at sc0000067:139400..151390+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006389 ID=TCONS_00006389|Name=TCONS_00006389|organism=Clytia hemisphaerica|type=transcript|length=11991bp|location=Sequence derived from alignment at sc0000067:139400..151390+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000067:139400..151390+ >TCONS_00006389 ID=TCONS_00006389|Name=TCONS_00006389|organism=Clytia hemisphaerica|type=CDS|length=10350bp|location=Sequence derived from alignment at sc0000067:139400..151390+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006389 vs. Swiss-Prot (Human)
Match: CCD61 (Coiled-coil domain-containing protein 61 OS=Homo sapiens GN=CCDC61 PE=1 SV=3) HSP 1 Score: 208.379 bits (529), Expect = 2.492e-57 Identity = 115/285 (40.35%), Postives = 169/285 (59.30%), Query Frame = 2
Query: 1322 QTTLQFGGVDFDVDVCEEDGVLVVNVENCETLDHWTGKYDTSYIEELTHKTGNFKQFHIFCNMLESAVLENCQSVSLDLLTYEDLKILREKKLGGPTRRKQKHNIEEKLKSKRYLIMTYTVEFDQIHYPLPLMYTGTSDTVTLKE*IKKLRKENHTLRG-------NTRNGSMLDM--DYEKTVQENTELKEELSHCHQQMQDISTGNLSKELKVLKKVIQNLETDLVKERSKHQRLMMKKKKEYDEIVQELEDLKASERNYRVRCKNLTDELAIMKRNSRFSPA 2149
Q F GV+ V V VL + VE+ T D W G++D +IE+LTHKTGNFKQF+IFC+MLESA+ ++ +SV+LDLLTY DL+ LR +K+GG R +L SKRYLI+ Y+VEFD+IHYPLPL Y G D V L+ I+ L++E L+G +TR + + + E EL+ +L ++ ++ +E + L+ +++ LE +L +ER R+ ++ ++ + +ELE+ KASER+ R R K LT ELA+ KR R P
Sbjct: 8 QVDYVFRGVEHAVRVMVSGQVLELEVEDRMTADQWRGEFDAGFIEDLTHKTGNFKQFNIFCHMLESALTQSSESVTLDLLTYTDLESLRNRKMGG--RPGSLAPRSAQLNSKRYLILIYSVEFDRIHYPLPLPYQGKPDPVVLQGIIRSLKEELGRLQGLDGQNTRDTRENEIWHLREQVSRLASEKRELEAQLGRSREEA--LAGRAARQEAEALRGLVRGLELELRQERGLGHRVAGRRGQDCRRLAKELEEAKASERSLRARLKTLTSELALYKRGRRTPPV 288 The following BLAST results are available for this feature:
BLAST of TCONS_00006389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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