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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006388 ID=TCONS_00006388|Name=TCONS_00006388|organism=Clytia hemisphaerica|type=transcript|length=639bp
CATCATAACTTTGATATGGTCGATGagATTGAATAATCACAAACATTAAA
AACCATGTCTTCCACATCACAAAAAcacaagaatttcattcaagaaCCAA
TGGGTGAGAAAGAAGTCACTGAATTGGCAGGAATCGGTCCTGTCCTTGGT
AACAAATTGTCAAATGAAGGTTTTGATAAAGCTTATGTTGTTCTTGGCCA
GTTCCTGATATTGAAGAAAGATGAAGAATTATTTGTGGAATGGTTAAAAG
ATACATGTGGTGCCAACAAAAAGCAATCAAATGATTGTTACAATTGCTTG
AAAGATTGGTGTGCTGCCTTCATGTGATATTTTCCAGTAATGTTTGGGAG
AGTTAAAAGAATTTTGTGGATTTTCTTATTGGAATACCTTCATCGGTTCA
CTCGTAACATTATGTTGAACAGTTTTTTTCGCACATTTGATGGGAATGAT
TTATTTTCTATGtagttattttattttattactattttttggataaaaac
cATGATGAAAAATAgatcattttttgttttagcagatatgtaaataaaaa
attgaaaccgTTTTAATACTTTGTTTCTTTCTtgttattttgttttcttt
caagTGAATTTGTTACATGTTGAGAAAACTATACTGAGC Run BLAST on NCBI transcript from alignment at sc0000067:134650..140667+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006388 ID=TCONS_00006388|Name=TCONS_00006388|organism=Clytia hemisphaerica|type=transcript|length=6018bp|location=Sequence derived from alignment at sc0000067:134650..140667+ (Clytia hemisphaerica)
CATCATAACTTTGATATGGTCGATGGTATAGTATGTTCAATTATACCATG
ATATGATATGAAGTATTCAATTGTTAGTCGAAGTGTTAGCCAATAATTTC
TACTAACGGCagggcagggggggggggggNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggggggggagggggggggg
gtgaaatttcaaagtcatttgattgCAAAATGTCAAACTTGTGCTACTTA
ttgtgagatcaggtaacttgcatcagtggaggctaacatgcatagccctc
aaataatgacctggctggtcattaaaatacaaagttaaatcaaaacaaaa
atggtagatttgAGCTGTTGTggagcggagctgcatagttcatttgtttt
gaaattttgctgctttgattgattACTCtggtaccagagtgtatctcact
attatcgtagcgtagttcactctgtgcgcattgtctgtttgataaaaatg
ttttcatacggagacctctgcaatgaagtatgattttaaaataaaatggc
cgccAAAGTACGACAATTGTATTGTAAACAAAGGGACCGGGTCCATGATT
GAGAGTCACTTTTTAAGCAtgatttggctgttttttaatgtttttgagcc
aaactaaaagctgaaaagtaaCAAAGACATATCCAAATTTtctaacaaaa
aattattttccaattaCCCTTTTTTTCCATGTGATATATACGCATTTTGA
TTACAAAAGTTATGCCAACAAAACAAACTCAGCCACTCTACATAGATCAA
ATGCTGTAAAagtaatactgaatttgaacataaaaactTACAGAGCTTCT
CTGAGTATATTCTTTTgcaaagaactgaagttaaaaccactttaaaaaca
agatttCAATCAAACAACTTCTCTCTCATGTTTGCGAACTCGAAGATCCA
AAATTCAATTTGtgcaaaaagagttattttgcaatagaatgtcttcatct
AGAGCTCTCTTTTAAtccaattattaaaaaataagaAGCCAGTTTTgtta
taaaaacactttttttcgacTAACTTCTTTACTTTCAGACAACTCTGACA
GCcatcggttagtgtaaaacgcaggccacaggttacaggtcacaggtcac
aggtcaacaaagtgcagaccagaAAAACGATAATAAGATCATCATAACAT
acacataacataacatcaatacataacgcattaaattacaaaaaagtaat
acatgttatttagatattataaaatgacaattgaatagaataacaaccta
gtgacacttacttacaaaaatattgacaaaatcataaaatatgatgccta
acaagacaaaagcacgaaaaatatttattatacaaaatgtgacgTGGAGG
Gtgtgaatgaataaaaaatggcaccaaacagaagcttgcaaggtccctaa
gagagtggtttaaaaggatggaactaattaattattcagttattatttta
atgtcttaatgacaatttttgacaaaaatattaacagaatcataaaatct
gatgcaAGAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNcaaaaaatatttataatacagaatgtgatgttgatagtgtgaatg
gatataaaacggcaccaatcagaagcttgtgaggtccctaagagagtggt
tttagaatgATGAAACTatttaatcattcaattgttattttaatgactta
atgacaatttttgacaaaaatattgacagaatcacaaaatatcatgtctt
acaagagaaaaacaccaaagatatttagcataccgaatgtgatgataaca
atatggctggatataaaattacaccaatcagaagctcctgagttctctga
gaaggtagttttagagtgttttagagcgatgtgttttattatatgtaacc
atcatataacattacaaacattacaatatgtaatatacctgttatacgta
taatatggtttcaaatatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNcaaactgcgaaagatcgataaaagca
catggttaaattttgatgtttgaaatggttttatatggatgaaattgctt
gagaattatgtttttgatgattctttgtgttttccaaacattttcctccg
CAATGAcatgtcatcactgacctgtgacctgtgacctgcgttttacacta
accggacagccattttgtttttatcgCCTCCGATTTCTCGCCAAACTCCA
ACAGCACTCCATCGTagcggttggtttgaaaaatctcaaaccagaaaaga
caatgacaacagaccctctacggcaatgaattttgaaattagccgtagat
gttgggtttgtgtacagacaattgattgattggtccgtcatttgatggct
atacaagtttccctccaagttacccaacttcacaggacttacttttgata
tttttgatggGGTTTTTGAGtctcaatcatccaatttggaaATCTGATGA
TTCACCATTTCTCTCTCACACAATGTTTTTGTGAATCCGCTCTCctgtaa
ttgtttcaaaaattgttttaattgtAGCATAGAGTTGCCCTGTTGGCAAC
CAGTCTAGTTTGTGTCTAAATGTTTTTGAACCCAGAAGAGTCATGCtgtt
ttacaaaaacaaacctctggaaaatttattttatagtcCAGGCAATATGG
GGCATGAGGTACCACCATGACGGTGAAAGAggtttgaaactgtttttggG
TTCAAACACATCTATATTTTGAGAATCGCGATGGTTTTCAGGCTAACCAG
TGGGCAATAACTTTTCAGAGGGGGAGTTTCGAGGGTATGTGGCAATCGTT
TTTGGAGCCAATTTGCCTGGGGTAGGGTACTGCATTTCAAGATATCTCAT
GAACTACATATCAAAACCTATTAAAACTTTTCAGGGTTTTAGATAAAGCA
TCGAAGATtgtgtgtgaaaaatttcaagatggtagcacgaaaaatgtgta
ttttacagacccgaatatcaaaattttgtgaaaaaatctaatttaaacaa
aaaataaaacttttaaattttacacAGGGCCAAATTCTTCCATGAAATAG
ATGTTAATGCCTTCGTTGCTCGTAGTCGGTATAGTTGTAGCATTGTGCAA
AGTTTTATGGATTTTAGACGACTATTTTTTGATCTACAgtccatttattt
tgaaaaattcggtcaaaactgccccaaaatacaagaaagatttttgacgt
ttttctatATAGCTCAGCAAAAAGCCAAGTAAACCTCATTAAAATTTCac
agatgttagtttttaagGCCAGGAACATTCAAGTGAAGTTTCGAGATGGT
GGGatgaaaaatgtgtattttacagaccagaatattttgaatttttcata
aaaattaagaTCTCTCTTTAGTTTTGACACCTCAAACGTTGTCTGAGACT
CATATTTTCAATCAATTGAAGCATTTTTGTTGATAATATCTATAACTATA
TTATATACATTCTTAGTTTAGAAGTCTGACTTAACAGTTGTTAAGTGCCT
TTGGTATTTTTCAGACTACTTTTCTGGCTGCTTTTGATTTAAATAGAATT
GACTCAATTTGAAATATCTCACTTGTCATCAAGTCATGTAAATCAAAGTT
GAAatgcttttgaaattttcataatgTGTCGAAAATGCGTTCTTGCTCAA
TTTAAATCAGATGATGAGACGATTAGATGGAAAAATGTagtttacagacc
agatatatAAAGCGTTGCACGAAACCCCGCTACGTTGACTTGTGGAAGCA
GacaaacaaatattttatttatctgattggtattttacagactaagCCTT
CCCTTTTTGAGTATATCTATATAAAAGTAGCTGAAAGTGAACAAATTTAA
AGTATTATGCTGCACTATCAAACAAGACTGACACAGTCAACCTGTGTTTA
CATTGTAGCCAAAAAGTCTTAATAATGACtcaaactttaaaggttttatt
tttacacaagtgttcCTATTTCATAtaagacacatatttcatatttcggg
acagtgtctgcctattgttctattatgctgatataagcaaagaaTGTTTT
TCTGTCTGTTAATCTCTCAGTTTAAGTTTAAAGAAGCCCCTTTACccctc
ttctttctttcttatCTGGCTGTCATAGTACAATATGAAATTAATACGTG
ATACCCATTCCATTGATTTAGCAATTAATTGTCCCAAAAATGGTTTCTTC
AAAATCTTATGTAAATGGCTCCATGCTTGGTGACTTTGTTGGTCAGTCTG
TCTGTGTTCTTGCGAAGATTACCAATGTTGATGACAATATGATGCAGATG
CAAATTCAAATGCCTGATGGGGCATCTGTCAAAGTACAACTGGAAGAACA
ATTGGATGAAAAAATCACTGGACATATTCAGATGATTGCGCGTGTTAATC
GAGACAGATCTTTGATGTGTGAAAATTTGATAAGTTTTGGAGCTGGGGAA
ATAGACTTAGATGCTTTTAATAGCACCATTGGTGTTATGCAGAAATACAG
CAATTTGTTTTCATCAAGTGAAGTTGATGGGATGGTTCATTGAGAAAAGA
GAaatcttcttttgtttttatgtaCTATTTAtatattcaaaatattatta
tttggtaaaaaaacctttagccatttttttccatttctcgCCTGAAAATG
tgccattttttaaaaattatttgaaaatacatGAAACAAAACTGAACAAA
AACTAATGTTCCTTATGTTCCGTTTCTTTcaatattctttttgttttttt
ctagagATTGAATAATCACAAACATTAAAAACCATGTCTTCCACATCACA
AAAAcacaagaatttcattcaagaaCCAATGGGTGAGAAAGAAGTCACTG
AATTGGCAGGAATCGGTCCTGTCCTTGGTAACAAATTGTCAAATGAAGGT
TTTGATAAAGCTTATGTTGTTCTTGGCCAGTTCCTGATATTGAAGAAAGA
TGAAGAATTATTTGTGGAATGGTTAAAAGATACATGTGGTGCCAACAAAA
AGCAATCAAATGATTGTTACAATTGCTTGAAAGATTGGTGTGCTGCCTTC
ATGTGATATTTTCCAGTAATGTTTGGGAGAGTTAAAAGAATTTTGTGGAT
TTTCTTATTGGAATACCTTCATCGGTTCACTCGTAACATTATGTTGAACA
GTTTTTTTCGCACATTTGATGGGAATGATTTATTTTCTATGtagttattt
tattttattactattttttggataaaaaccATGATGAAAAATAgatcatt
ttttgttttagcagatatgtaaataaaaaattgaaaccgTTTTAATACTT
TGTTTCTTTCTtgttattttgttttctttcaagTGAATTTGTTACATGTT
GAGAAAACTATACTGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006388-exon-sc0000067-1491911889:134650..134674 | TCONS_00006388-exon-sc0000067-1491911889:134650..134674 | Clytia hemisphaerica | exon |
| TCONS_00006388-exon-sc0000067-1510915933:134650..134674 | TCONS_00006388-exon-sc0000067-1510915933:134650..134674 | Clytia hemisphaerica | exon |
| TCONS_00006388-exon-sc0000067-1575043694:134650..134674 | TCONS_00006388-exon-sc0000067-1575043694:134650..134674 | Clytia hemisphaerica | exon |
| TCONS_00006388-exon-sc0000067-1491911889:140054..140667 | TCONS_00006388-exon-sc0000067-1491911889:140054..140667 | Clytia hemisphaerica | exon |
| TCONS_00006388-exon-sc0000067-1510915933:140054..140667 | TCONS_00006388-exon-sc0000067-1510915933:140054..140667 | Clytia hemisphaerica | exon |
| TCONS_00006388-exon-sc0000067-1575043694:140054..140667 | TCONS_00006388-exon-sc0000067-1575043694:140054..140667 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:134650..140667 + |
Blast
BLAST of TCONS_00006388 vs. Swiss-Prot (Human)
Match: BAF (Barrier-to-autointegration factor OS=Homo sapiens GN=BANF1 PE=1 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 8.630e-43 Identity = 64/88 (72.73%), Postives = 74/88 (84.09%), Query Frame = 1
Query: 61 STSQKHKNFIQEPMGEKEVTELAGIGPVLGNKLSNEGFDKAYVVLGQFLILKKDEELFVEWLKDTCGANKKQSNDCYNCLKDWCAAFM 324
+TSQKH++F+ EPMGEK V LAGIG VLG KL GFDKAYVVLGQFL+LKKDE+LF EWLKDTCGAN KQS DC+ CL++WC AF+
Sbjct: 2 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGANAKQSRDCFGCLREWCDAFL 89
The following BLAST results are available for this feature:
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