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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006386 ID=TCONS_00006386|Name=TCONS_00006386|organism=Clytia hemisphaerica|type=transcript|length=2121bp
CAGAACAACGCCAAGTTATGTTGCGTTCAATGACGTTGAGCGTCTCATTG
GTGATGCAGCAAAAAACCAAGCTGCTATGAATCCTACTAACACCATTTTC
GACGCAAAACGATTGATCGGTAGAAATTTTGTGGATCAAACAGTCCAATC
GGATATAAAGTTATGGCCATTTAAAGTTGTAAACAAAGCTGGAAAACCAA
AGATTGAGGTCGATTTCAAAGGGGAACGAAAGATTTATACTCCAGAAGAA
ATATCATCAATGgttttatcaaaaatgaaagataCTGCTGAAAATTATCT
GGGAGAGAAAGTTACAGATGCAGTCATTACAGTCCCAGCATATTTCAACG
ACAGCCAACGACAAGCCACAAAAGACGCAGGTGTGATTGCTGGTTTGAAC
GTCTTGCGTGTTGTTAATGAACCAACAGCAGCAGCAATTGCTTACGGCCT
TGACAAGTTCACTGATGAcgaaagaaatgttttgattttcgatCTTGGAG
GTGGCACCTTTGATGTCTCAGTACTGGCAATTGATAATGGAGTCTTTGAA
GTGAAATCAACCCGTGGCGACACGCACCTTGGTGGCGAAGACTTTGACAA
CAGAATGGTGGAACATTTCGTAGCCGAGATCAAACGAAAACACAAGAAAG
ATATCACATCCAACAAACGAGCTATCAGACGTTTAAGAACAGCTTGCGAA
AAAGCCAAACGAACTCTCTCTTCGACAGCTCAAGCTTCTATCGAGATCGA
TTCCCTTTTCGACGGAGTTGATTTCTTCACATCTATCTCCAGAGCAAGGT
TTGAGGAGCTAAACTCAGAGATGTTCAAGAAGACGTTGGAACCGGTACAA
AAAGCCCTTGCAGACGCCAAGTTAGATAAATCACAAATTCATGAAATCGT
TTTGGTTGGAGGATCAACAAGAATCCCGAAAATCCGAAAGATGTTACAAG
ATTATTTCAACGGGAAATCACTCTGTAATTCTGTCAACCCAGATGAAGCT
GTTGCATATGGAGCTGCCATCCAAGCTGCCATCTTGACTGGCTCAAAAGA
CGATGCTGTTAAAGATCTACTATTGATTGACGTGGCTCCTTTATCACTTG
GTATTGAGACAGCTGGAGgagtgatgacgtcactcatcaaaCGAAACACC
AAAATCCCATGCAATCAAGCTCAAACCTTCACAACGTACTCCGACAATCA
ACCCGGTGTCAGCATCCAAGTCTTTGAAGGTGAACGAAGTATGACCAAAG
ATAACCATCGACTTGGAGAATTTGAACTTTCTGGAATCGCACCAGCCCCA
AGAGGTGTACCGCAGATCGAAGTTACTTTCGATATCGATGCTAATGGTAT
TTTAAATGTGACAGCCAAAGACAAGAGCACTGGCAAAGATGCACACATTA
CCATCAATAAAGGTCGATTATCCAAGGACGAGGTTGAGAGGATGGTACAG
GATGCTGAGAAACATCGTGCGGAAGACGAGCAGCAAAAGGAACGAGTGGA
TGCAAGAAACGCACTTGAAGCCTACGCCTTCCAAATGAAAAGCACTGTTG
ATGACTCAAACATCAAAAAGAAGTTAAGTGAAGGTGACCAAGAGACAATC
CTCAAGAAATGCCAAGAAGTTTTGCAATGGATTGATGGCAATCAGCTGGC
ATCAAAGGAGGAATTCGAACACCAGAAAAGCGAATTGGAGAACGTTTGTC
GACCCATCATGACCAAATTGCATCAAGGTGGAGCAACAGGAGCTGGCCAA
TCCAACATGTCTCAAGGTGGACCAACTGTCGAAGAAGTTGACTAAACAAA
GTATATTCAAGAGAACATTATACCTGAGTATacctataaaaaagaaaaat
tatgatAATATCGCTGTTAAAAGAAACCATTGTAGCAGTAGGAAACCATT
ATATTTatgtaaattttattgtttGATTTAAAGACATTGTATATTTCAAA
AGAACtttgttgtaaaaaaaaatgaagttagtCTTCATTCAACCATTATT
TAActcaaaagatttgaaaaaagaacAGTCGTAAAAGAACAagccatttt
gaaataaatattcATCTGTATTCTTATTGACCGTAAATTTCATACACCCT
Tccggaaaaattggccaaaat Run BLAST on NCBI transcript from alignment at sc0000067:100338..103762+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006386 ID=TCONS_00006386|Name=TCONS_00006386|organism=Clytia hemisphaerica|type=transcript|length=3425bp|location=Sequence derived from alignment at sc0000067:100338..103762+ (Clytia hemisphaerica)
CAGAACAACGCCAAGTTATGTTGCGTTCAATGACGTTGAGCGTCTCATTG
GTGATGCAGCAAAAAACCAAGCTGCTATGAATCCTACTAACACCATTTTC
GACGCAAAACGATTGATCGGTAGAAATTTTGTGGATCAAACAGTCCAATC
GGATATAAAGTTATGGCCATTTAAAGTTGTAAACAAAGCTGGAAAACCAA
AGATTGAGGTATGTATTTTCAGTCAGTCTTATTCTTTTTGTTAACTCTAA
TAGCTTATTGAAAAGCAATCAGAACTTGCCATCATCAGTATCCTATAATG
TGTTATTTTCTTTATTactcaatgtttttattttttgttgcaCGTCAGTT
GTATACAATAAATTGACAtttaatttcatatttcatattttcatttcaGG
TCGATTTCAAAGGGGAACGAAAGATTTATACTCCAGAAGAAATATCATCA
ATGgttttatcaaaaatgaaagataCTGCTGAAAATTATCTGGGAGAGAA
AGTTACAGATGCAGTCATTACAGTCCCAGCATATTTCAACGACAGCCAAC
GACAAGCCACAAAAGACGCAGGTGTGATTGCTGGTTTGAACGTCTTGCGT
GTTGTTAATGAACCAACAGCAGCAGCAATTGCTTACGGCCTTGACAAGTT
CACTGATGAcgaaagaaatgttttgattttcgatCTTGGAGGTGGCACCT
TTGATGTCTCAGTACTGGCAATTGATAATGGAGTCTTTGAAGTGAAATCA
ACCCGTGGCGACACGCACCTTGGTGGCGAAGACTTTGACAACAGAATGGT
GGAACATTTCGTAGCCGTAAGTCCTTCAATCATAATTTTTTCATCTCTTA
TTCATGTCATTAAGGAGTATAAGATAATAAATCTTTATAAATAAAAGCAT
CAGCTTTGCATAAATCGAGACATTTGACAACACCGGTTAAAAAAGTAGTG
CATCGGACCTAATTTTAGATCAACATGGTATGTGAGACTTAATTATTTAT
CAAGAANTTCTTTTTGTTAACTCTAATAGCTTATTGAAAAGCAATCAGAA
CTTGCCATCATCAGTATCCTATAATGTGTTATTTTCTTTATTactcaatg
tttttattttttgttgcaCGTCAGTTGTATACAATAAATTGACAtttaat
ttcatatttcatattttcatttcaGGTCGATTTCAAAGGGGAACGAAAGA
TTTATACTCCAGAAGAAATATCATCAATGgttttatcaaaaatgaaagat
aCTGCTGAAAATTATCTGGGAGAGAAAGTTACAGATGCAGTCATTACAGT
CCCAGCATATTTCAACGACAGCCAACGACAAGCCACAAAAGACGCAGGTG
TGATTGCTGGTTTGAACGTCTTGCGTGTTGTTAATGAACCAACAGCAGCA
GCAATTGCTTACGGCCTTGACAAGTTCACTGATGAcgaaagaaatgtttt
gattttcgatCTTGGAGGTGGCACCTTTGATGTCTCAGTACTGGCAATTG
ATAATGGAGTCTTTGAAGTGAAATCAACCCGTGGCGACACGCACCTTGGT
GGCGAAGACTTTGACAACAGAATGGTGGAACATTTCGTAGCCGTAAGTCC
TTCAATCATAATTTTTTCATCTCTTATTCATGTCATTAAGGAGTATAAGA
TAATAAATCTTTATAAATAAAAGCATCAGCTTTGCATAAATCGAGACATT
TGACAACACCGGTTAAAAAAGTAGTGCATCGGACCTAATTTTAGATCAAC
ATGGTATATGAGACTTAATTATTTATCAAGAAATTCTATTTTGCGCACTT
CTTGCCTACTCCACTGAATTGTGTTGGATGAGTCGACAATTCTTGAGAAT
ATCCATTAAGATTgactaatttttctttttctttcaagtAAGTGCATTGA
CTAATTTGTTTCTCTCTTTCTACCTTCAGGAGATCAAACGAAAACACAAG
AAAGATATCACATCCAACAAACGAGCTATCAGACGTTTAAGAACAGCTTG
CGAAAAAGCCAAACGAACTCTCTCTTCGACAGCTCAAGCTTCTATCGAGA
TCGATTCCCTTTTCGACGGAGTTGATTTCTTCACATCTATCTCCAGAGCA
AGGTTTGAGGAGCTAAACTCAGAGATGTTCAAGAAGACGTTGGAACCGGT
ACAAAAAGCCCTTGCAGACGCCAAGTTAGATAAATCACAAATTCATGAAA
TCGTTTTGGTTGGAGGATCAACAAGAATCCCGAAAATCCGAAAGATGTTA
CAAGATTATTTCAACGGGAAATCACTCTGTAATTCTGTCAACCCAGATGA
AGCTGTTGCATATGGAGCTGCCATCCAAGCTGCCATCTTGACTGGCTCAA
AAGACGATGCTGTTAAAGATCTACTATTGATTGACGTGGCTCCTTTATCA
CTTGGTATTGAGACAGCTGGAGgagtgatgacgtcactcatcaaaCGAAA
CACCAAAATCCCATGCAATCAAGCTCAAACCTTCACAACGTACTCCGACA
ATCAACCCGGTGTCAGCATCCAAGTCTTTGAAGGTGAACGAAGTATGACC
AAAGATAACCATCGACTTGGAGAATTTGAACTTTCTGGAATCGCACCAGC
CCCAAGAGGTGTACCGCAGATCGAAGTTACTTTCGATATCGATGCTAATG
GTATTTTAAATGTGACAGCCAAAGACAAGAGCACTGGCAAAGATGCACAC
ATTACCATCAATAAAGGTCGATTATCCAAGGACGAGGTTGAGAGGATGGT
ACAGGATGCTGAGAAACATCGTGCGGAAGACGAGCAGCAAAAGGAACGAG
TGGATGCAAGAAACGCACTTGAAGCCTACGCCTTCCAAATGAAAAGCACT
GTTGATGACTCAAACATCAAAAAGAAGTTAAGTGAAGGTGACCAAGAGAC
AATCCTCAAGAAATGCCAAGAAGTTTTGCAATGGATTGATGGCAATCAGC
TGGCATCAAAGGAGGAATTCGAACACCAGAAAAGCGAATTGGAGAACGTT
TGTCGACCCATCATGACCAAATTGCATCAAGGTGGAGCAACAGGAGCTGG
CCAATCCAACATGTCTCAAGGTGGACCAACTGTCGAAGAAGTTGACTAAA
CAAAGTATATTCAAGAGAACATTATACCTGAGTATacctataaaaaagaa
aaattatgatAATATCGCTGTTAAAAGAAACCATTGTAGCAGTAGGAAAC
CATTATATTTatgtaaattttattgtttGATTTAAAGACATTGTATATTT
CAAAAGAACtttgttgtaaaaaaaaatgaagttagtCTTCATTCAACCAT
TATTTAActcaaaagatttgaaaaaagaacAGTCGTAAAAGAACAagcca
ttttgaaataaatattcATCTGTATTCTTATTGACCGTAAATTTCATACA
CCCTTccggaaaaattggccaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006386-exon-sc0000067-1491911889:100338..100545 | TCONS_00006386-exon-sc0000067-1491911889:100338..100545 | Clytia hemisphaerica | exon |
| TCONS_00006386-exon-sc0000067-1510915933:100338..100545 | TCONS_00006386-exon-sc0000067-1510915933:100338..100545 | Clytia hemisphaerica | exon |
| TCONS_00006386-exon-sc0000067-1575043694:100338..100545 | TCONS_00006386-exon-sc0000067-1575043694:100338..100545 | Clytia hemisphaerica | exon |
| TCONS_00006386-exon-sc0000067-1491911889:100737..101142 | TCONS_00006386-exon-sc0000067-1491911889:100737..101142 | Clytia hemisphaerica | exon |
| TCONS_00006386-exon-sc0000067-1510915933:100737..101142 | TCONS_00006386-exon-sc0000067-1510915933:100737..101142 | Clytia hemisphaerica | exon |
| TCONS_00006386-exon-sc0000067-1575043694:100737..101142 | TCONS_00006386-exon-sc0000067-1575043694:100737..101142 | Clytia hemisphaerica | exon |
| TCONS_00006386-exon-sc0000067-1491911889:101919..101929 | TCONS_00006386-exon-sc0000067-1491911889:101919..101929 | Clytia hemisphaerica | exon |
| TCONS_00006386-exon-sc0000067-1510915933:101919..101929 | TCONS_00006386-exon-sc0000067-1510915933:101919..101929 | Clytia hemisphaerica | exon |
| TCONS_00006386-exon-sc0000067-1575043694:101919..101929 | TCONS_00006386-exon-sc0000067-1575043694:101919..101929 | Clytia hemisphaerica | exon |
| TCONS_00006386-exon-sc0000067-1491911889:102267..103762 | TCONS_00006386-exon-sc0000067-1491911889:102267..103762 | Clytia hemisphaerica | exon |
| TCONS_00006386-exon-sc0000067-1510915933:102267..103762 | TCONS_00006386-exon-sc0000067-1510915933:102267..103762 | Clytia hemisphaerica | exon |
| TCONS_00006386-exon-sc0000067-1575043694:102267..103762 | TCONS_00006386-exon-sc0000067-1575043694:102267..103762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:100338..103762 + |
Blast
BLAST of TCONS_00006386 vs. Swiss-Prot (Human)
Match: HSP7C (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1) HSP 1 Score: 894.034 bits (2309), Expect = 0.000e+0 Identity = 429/577 (74.35%), Postives = 512/577 (88.73%), Query Frame = 2
Query: 2 RTTPSYVAFNDVERLIGDAAKNQAAMNPTNTIFDAKRLIGRNFVDQTVQSDIKLWPFKVVNKAGKPKIEVDFKGERKIYTPEEISSMVLSKMKDTAENYLGEKVTDAVITVPAYFNDSQRQATKDAGVIAGLNVLRVVNEPTAAAIAYGLDKFTDDERNVLIFDLGGGTFDVSVLAIDNGVFEVKSTRGDTHLGGEDFDNRMVEHFVAEIKRKHKKDITSNKRAIRRLRTACEKAKRTLSSTAQASIEIDSLFDGVDFFTSISRARFEELNSEMFKKTLEPVQKALADAKLDKSQIHEIVLVGGSTRIPKIRKMLQDYFNGKSLCNSVNPDEXXXXXXXXXXXILTGSKDDAVKDLLLIDVAPLSLGIETAGGVMTSLIKRNTKIPCNQAQTFTTYSDNQPGVSIQVFEGERSMTKDNHRLGEFELSGIAPAPRGVPQIEVTFDIDANGILNVTAKDKSTGKDAHITI--NKGRLSKDEVERMVQDAEKHRAEDEQQKERVDARNALEAYAFQMKSTVDDSNIKKKLSEGDQETILKKCQEVLQWIDGNQLASKEEFEHQKSELENVCRPIMTKLHQ 1726
RTTPSYVAF D ERLIGDAAKNQ AMNPTNT+FDAKRLIGR F D VQSD+K WPF VVN AG+PK++V++KGE K + PEE+SSMVL+KMK+ AE YLG+ VT+AV+TVPAYFNDSQRQATKDAG IAGLNVLR++NEPTAAAIAYGLDK ERNVLIFDLGGGTFDVS+L I++G+FEVKST GDTHLGGEDFDNRMV HF+AE KRKHKKDI+ NKRA+RRLRTACE+AKRTLSS+ QASIEIDSL++G+DF+TSI+RARFEELN+++F+ TL+PV+KAL DAKLDKSQIH+IVLVGGSTRIPKI+K+LQD+FNGK L S+NPDEAVAYGAA+QAAIL+G K + V+DLLL+DV PLSLGIETAGGVMT LIKRNT IP Q QTFTTYSDNQPGV IQV+EGER+MTKDN+ LG+FEL+GI PAPRGVPQIEVTFDIDANGILNV+A DKSTGK+ ITI +KGRLSK+++ERMVQ+AEK++AEDE+Q+++V ++N+LE+YAF MK+TV+D ++ K+++ D++ IL KC E++ W+D NQ A KEEFEHQ+ ELE VC PI+TKL+Q
Sbjct: 36 RTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
The following BLAST results are available for this feature:
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