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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006384 ID=TCONS_00006384|Name=TCONS_00006384|organism=Clytia hemisphaerica|type=transcript|length=2123bp
AACAGAACAACGCCAAGTTATGTTGCGTTCAATGACGTTGAGCGTCTCAT
TGGTGATGCAGCAAAAAACCAAGCTGCTATGAATCCTACTAACACCATTT
TCGACGCAAAACGATTGATCGGTAGAAATTTTGTGGATCAAACAGTCCAA
TCGGATATAAAGTTATGGCCATTTAAAGTTGTAAACAAAGCTGGAAAACC
AAAGATTGAGGTCGATTTCAAAGGGGAACGAAAGATTTATACTCCAGAAG
AAATATCATCAATGgttttatcaaaaatgaaagataCTGCTGAAAATTAT
CTGGGAGAGAAAGTTACAGATGCAGTCATTACAGTCCCAGCATATTTCAA
CGACAGCCAACGACAAGCCACAAAAGACGCAGGTGTGATTGCTGGTTTGA
ACGTCTTGCGTGTTGTTAATGAACCAACAGCAGCAGCAATTGCTTACGGC
CTTGACAAGTTCACTGATGAcgaaagaaatgttttgattttcgatCTTGG
AGGTGGCACCTTTGATGTCTCAGTACTGGCAATTGATAATGGAGTCTTTG
AAGTGAAATCAACCCGTGGCGACACGCACCTTGGTGGCGAAGACTTTGAC
AACAGAATGGTGGAACATTTCGTAGCCGAGATCAAACGAAAACACAAGAA
AGATATCACATCCAACAAACGAGCTATCAGACGTTTAAGAACAGCTTGCG
AAAAAGCCAAACGAACTCTCTCTTCGACAGCTCAAGCTTCTATCGAGATC
GATTCCCTTTTCGACGGAGTTGATTTCTTCACATCTATCTCCAGAGCAAG
GTTTGAGGAGCTAAACTCAGAGATGTTCAAGAAGACGTTGGAACCGGTAC
AAAAAGCCCTTGCAGACGCCAAGTTAGATAAATCACAAATTCATGAAATC
GTTTTGGTTGGAGGATCAACAAGAATCCCGAAAATCCGAAAGATGTTACA
AGATTATTTCAACGGGAAATCACTCTGTAATTCTGTCAACCCAGATGAAG
CTGTTGCATATGGAGCTGCCATCCAAGCTGCCATCTTGACTGGCTCAAAA
GACGATGCTGTTAAAGATCTACTATTGATTGACGTGGCTCCTTTATCACT
TGGTATTGAGACAGCTGGAGgagtgatgacgtcactcatcaaaCGAAACA
CCAAAATCCCATGCAATCAAGCTCAAACCTTCACAACGTACTCCGACAAT
CAACCCGGTGTCAGCATCCAAGTCTTTGAAGGTGAACGAAGTATGACCAA
AGATAACCATCGACTTGGAGAATTTGAACTTTCTGGAATCGCACCAGCCC
CAAGAGGTGTACCGCAGATCGAAGTTACTTTCGATATCGATGCTAATGGT
ATTTTAAATGTGACAGCCAAAGACAAGAGCACTGGCAAAGATGCACACAT
TACCATCAATAAAGGTCGATTATCCAAGGACGAGGTTGAGAGGATGGTAC
AGGATGCTGAGAAACATCGTGCGGAAGACGAGCAGCAAAAGGAACGAGTG
GATGCAAGAAACGCACTTGAAGCCTACGCCTTCCAAATGAAAAGCACTGT
TGATGACTCAAACATCAAAAAGAAGTTAAGTGAAGGTGACCAAGAGACAA
TCCTCAAGAAATGCCAAGAAGTTTTGCAATGGATTGATGGCAATCAGCTG
GCATCAAAGGAGGAATTCGAACACCAGAAAAGCGAATTGGAGAACGTTTG
TCGACCCATCATGACCAAATTGCATCAAGGTGGAGCAACAGGAGCTGGCC
AATCCAACATGTCTCAAGGTGGACCAACTGTCGAAGAAGTTGACTAAACA
AAGTATATTCAAGAGAACATTATACCTGAGTATacctataaaaaagaaaa
attatgatAATATCGCTGTTAAAAGAAACCATTGTAGCAGTAGGAAACCA
TTATATTTatgtaaattttattgtttGATTTAAAGACATTGTATATTTCA
AAAGAACtttgttgtaaaaaaaaatgaagttagtCTTCATTCAACCATTA
TTTAActcaaaagatttgaaaaaagaacAGTCGTAAAAGAACAagccatt
ttgaaataaatattcATCTGTATTCTTATTGACCGTAAATTTCATACACC
CTTccggaaaaattggccaaaat Run BLAST on NCBI transcript from alignment at sc0000067:100336..103762+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006384 ID=TCONS_00006384|Name=TCONS_00006384|organism=Clytia hemisphaerica|type=transcript|length=3427bp|location=Sequence derived from alignment at sc0000067:100336..103762+ (Clytia hemisphaerica)
AACAGAACAACGCCAAGTTATGTTGCGTTCAATGACGTTGAGCGTCTCAT
TGGTGATGCAGCAAAAAACCAAGCTGCTATGAATCCTACTAACACCATTT
TCGACGCAAAACGATTGATCGGTAGAAATTTTGTGGATCAAACAGTCCAA
TCGGATATAAAGTTATGGCCATTTAAAGTTGTAAACAAAGCTGGAAAACC
AAAGATTGAGGTATGTATTTTCAGTCAGTCTTATTCTTTTTGTTAACTCT
AATAGCTTATTGAAAAGCAATCAGAACTTGCCATCATCAGTATCCTATAA
TGTGTTATTTTCTTTATTactcaatgtttttattttttgttgcaCGTCAG
TTGTATACAATAAATTGACAtttaatttcatatttcatattttcatttca
GGTCGATTTCAAAGGGGAACGAAAGATTTATACTCCAGAAGAAATATCAT
CAATGgttttatcaaaaatgaaagataCTGCTGAAAATTATCTGGGAGAG
AAAGTTACAGATGCAGTCATTACAGTCCCAGCATATTTCAACGACAGCCA
ACGACAAGCCACAAAAGACGCAGGTGTGATTGCTGGTTTGAACGTCTTGC
GTGTTGTTAATGAACCAACAGCAGCAGCAATTGCTTACGGCCTTGACAAG
TTCACTGATGAcgaaagaaatgttttgattttcgatCTTGGAGGTGGCAC
CTTTGATGTCTCAGTACTGGCAATTGATAATGGAGTCTTTGAAGTGAAAT
CAACCCGTGGCGACACGCACCTTGGTGGCGAAGACTTTGACAACAGAATG
GTGGAACATTTCGTAGCCGTAAGTCCTTCAATCATAATTTTTTCATCTCT
TATTCATGTCATTAAGGAGTATAAGATAATAAATCTTTATAAATAAAAGC
ATCAGCTTTGCATAAATCGAGACATTTGACAACACCGGTTAAAAAAGTAG
TGCATCGGACCTAATTTTAGATCAACATGGTATGTGAGACTTAATTATTT
ATCAAGAANTTCTTTTTGTTAACTCTAATAGCTTATTGAAAAGCAATCAG
AACTTGCCATCATCAGTATCCTATAATGTGTTATTTTCTTTATTactcaa
tgtttttattttttgttgcaCGTCAGTTGTATACAATAAATTGACAttta
atttcatatttcatattttcatttcaGGTCGATTTCAAAGGGGAACGAAA
GATTTATACTCCAGAAGAAATATCATCAATGgttttatcaaaaatgaaag
ataCTGCTGAAAATTATCTGGGAGAGAAAGTTACAGATGCAGTCATTACA
GTCCCAGCATATTTCAACGACAGCCAACGACAAGCCACAAAAGACGCAGG
TGTGATTGCTGGTTTGAACGTCTTGCGTGTTGTTAATGAACCAACAGCAG
CAGCAATTGCTTACGGCCTTGACAAGTTCACTGATGAcgaaagaaatgtt
ttgattttcgatCTTGGAGGTGGCACCTTTGATGTCTCAGTACTGGCAAT
TGATAATGGAGTCTTTGAAGTGAAATCAACCCGTGGCGACACGCACCTTG
GTGGCGAAGACTTTGACAACAGAATGGTGGAACATTTCGTAGCCGTAAGT
CCTTCAATCATAATTTTTTCATCTCTTATTCATGTCATTAAGGAGTATAA
GATAATAAATCTTTATAAATAAAAGCATCAGCTTTGCATAAATCGAGACA
TTTGACAACACCGGTTAAAAAAGTAGTGCATCGGACCTAATTTTAGATCA
ACATGGTATATGAGACTTAATTATTTATCAAGAAATTCTATTTTGCGCAC
TTCTTGCCTACTCCACTGAATTGTGTTGGATGAGTCGACAATTCTTGAGA
ATATCCATTAAGATTgactaatttttctttttctttcaagtAAGTGCATT
GACTAATTTGTTTCTCTCTTTCTACCTTCAGGAGATCAAACGAAAACACA
AGAAAGATATCACATCCAACAAACGAGCTATCAGACGTTTAAGAACAGCT
TGCGAAAAAGCCAAACGAACTCTCTCTTCGACAGCTCAAGCTTCTATCGA
GATCGATTCCCTTTTCGACGGAGTTGATTTCTTCACATCTATCTCCAGAG
CAAGGTTTGAGGAGCTAAACTCAGAGATGTTCAAGAAGACGTTGGAACCG
GTACAAAAAGCCCTTGCAGACGCCAAGTTAGATAAATCACAAATTCATGA
AATCGTTTTGGTTGGAGGATCAACAAGAATCCCGAAAATCCGAAAGATGT
TACAAGATTATTTCAACGGGAAATCACTCTGTAATTCTGTCAACCCAGAT
GAAGCTGTTGCATATGGAGCTGCCATCCAAGCTGCCATCTTGACTGGCTC
AAAAGACGATGCTGTTAAAGATCTACTATTGATTGACGTGGCTCCTTTAT
CACTTGGTATTGAGACAGCTGGAGgagtgatgacgtcactcatcaaaCGA
AACACCAAAATCCCATGCAATCAAGCTCAAACCTTCACAACGTACTCCGA
CAATCAACCCGGTGTCAGCATCCAAGTCTTTGAAGGTGAACGAAGTATGA
CCAAAGATAACCATCGACTTGGAGAATTTGAACTTTCTGGAATCGCACCA
GCCCCAAGAGGTGTACCGCAGATCGAAGTTACTTTCGATATCGATGCTAA
TGGTATTTTAAATGTGACAGCCAAAGACAAGAGCACTGGCAAAGATGCAC
ACATTACCATCAATAAAGGTCGATTATCCAAGGACGAGGTTGAGAGGATG
GTACAGGATGCTGAGAAACATCGTGCGGAAGACGAGCAGCAAAAGGAACG
AGTGGATGCAAGAAACGCACTTGAAGCCTACGCCTTCCAAATGAAAAGCA
CTGTTGATGACTCAAACATCAAAAAGAAGTTAAGTGAAGGTGACCAAGAG
ACAATCCTCAAGAAATGCCAAGAAGTTTTGCAATGGATTGATGGCAATCA
GCTGGCATCAAAGGAGGAATTCGAACACCAGAAAAGCGAATTGGAGAACG
TTTGTCGACCCATCATGACCAAATTGCATCAAGGTGGAGCAACAGGAGCT
GGCCAATCCAACATGTCTCAAGGTGGACCAACTGTCGAAGAAGTTGACTA
AACAAAGTATATTCAAGAGAACATTATACCTGAGTATacctataaaaaag
aaaaattatgatAATATCGCTGTTAAAAGAAACCATTGTAGCAGTAGGAA
ACCATTATATTTatgtaaattttattgtttGATTTAAAGACATTGTATAT
TTCAAAAGAACtttgttgtaaaaaaaaatgaagttagtCTTCATTCAACC
ATTATTTAActcaaaagatttgaaaaaagaacAGTCGTAAAAGAACAagc
cattttgaaataaatattcATCTGTATTCTTATTGACCGTAAATTTCATA
CACCCTTccggaaaaattggccaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006384-exon-sc0000067-1491911889:100336..100545 | TCONS_00006384-exon-sc0000067-1491911889:100336..100545 | Clytia hemisphaerica | exon |
| TCONS_00006384-exon-sc0000067-1510915933:100336..100545 | TCONS_00006384-exon-sc0000067-1510915933:100336..100545 | Clytia hemisphaerica | exon |
| TCONS_00006384-exon-sc0000067-1575043694:100336..100545 | TCONS_00006384-exon-sc0000067-1575043694:100336..100545 | Clytia hemisphaerica | exon |
| TCONS_00006384-exon-sc0000067-1491911889:101513..101929 | TCONS_00006384-exon-sc0000067-1491911889:101513..101929 | Clytia hemisphaerica | exon |
| TCONS_00006384-exon-sc0000067-1510915933:101513..101929 | TCONS_00006384-exon-sc0000067-1510915933:101513..101929 | Clytia hemisphaerica | exon |
| TCONS_00006384-exon-sc0000067-1575043694:101513..101929 | TCONS_00006384-exon-sc0000067-1575043694:101513..101929 | Clytia hemisphaerica | exon |
| TCONS_00006384-exon-sc0000067-1491911889:102267..103762 | TCONS_00006384-exon-sc0000067-1491911889:102267..103762 | Clytia hemisphaerica | exon |
| TCONS_00006384-exon-sc0000067-1510915933:102267..103762 | TCONS_00006384-exon-sc0000067-1510915933:102267..103762 | Clytia hemisphaerica | exon |
| TCONS_00006384-exon-sc0000067-1575043694:102267..103762 | TCONS_00006384-exon-sc0000067-1575043694:102267..103762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:100336..103762 + |
Blast
BLAST of TCONS_00006384 vs. Swiss-Prot (Human)
Match: HSP7C (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1) HSP 1 Score: 896.345 bits (2315), Expect = 0.000e+0 Identity = 430/578 (74.39%), Postives = 513/578 (88.75%), Query Frame = 1
Query: 1 NRTTPSYVAFNDVERLIGDAAKNQAAMNPTNTIFDAKRLIGRNFVDQTVQSDIKLWPFKVVNKAGKPKIEVDFKGERKIYTPEEISSMVLSKMKDTAENYLGEKVTDAVITVPAYFNDSQRQATKDAGVIAGLNVLRVVNEPTAAAIAYGLDKFTDDERNVLIFDLGGGTFDVSVLAIDNGVFEVKSTRGDTHLGGEDFDNRMVEHFVAEIKRKHKKDITSNKRAIRRLRTACEKAKRTLSSTAQASIEIDSLFDGVDFFTSISRARFEELNSEMFKKTLEPVQKALADAKLDKSQIHEIVLVGGSTRIPKIRKMLQDYFNGKSLCNSVNPDEXXXXXXXXXXXILTGSKDDAVKDLLLIDVAPLSLGIETAGGVMTSLIKRNTKIPCNQAQTFTTYSDNQPGVSIQVFEGERSMTKDNHRLGEFELSGIAPAPRGVPQIEVTFDIDANGILNVTAKDKSTGKDAHITI--NKGRLSKDEVERMVQDAEKHRAEDEQQKERVDARNALEAYAFQMKSTVDDSNIKKKLSEGDQETILKKCQEVLQWIDGNQLASKEEFEHQKSELENVCRPIMTKLHQ 1728
NRTTPSYVAF D ERLIGDAAKNQ AMNPTNT+FDAKRLIGR F D VQSD+K WPF VVN AG+PK++V++KGE K + PEE+SSMVL+KMK+ AE YLG+ VT+AV+TVPAYFNDSQRQATKDAG IAGLNVLR++NEPTAAAIAYGLDK ERNVLIFDLGGGTFDVS+L I++G+FEVKST GDTHLGGEDFDNRMV HF+AE KRKHKKDI+ NKRA+RRLRTACE+AKRTLSS+ QASIEIDSL++G+DF+TSI+RARFEELN+++F+ TL+PV+KAL DAKLDKSQIH+IVLVGGSTRIPKI+K+LQD+FNGK L S+NPDEAVAYGAA+QAAIL+G K + V+DLLL+DV PLSLGIETAGGVMT LIKRNT IP Q QTFTTYSDNQPGV IQV+EGER+MTKDN+ LG+FEL+GI PAPRGVPQIEVTFDIDANGILNV+A DKSTGK+ ITI +KGRLSK+++ERMVQ+AEK++AEDE+Q+++V ++N+LE+YAF MK+TV+D ++ K+++ D++ IL KC E++ W+D NQ A KEEFEHQ+ ELE VC PI+TKL+Q
Sbjct: 35 NRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
The following BLAST results are available for this feature:
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