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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006376 ID=TCONS_00006376|Name=TCONS_00006376|organism=Clytia hemisphaerica|type=transcript|length=1558bp
ATCGTAAACTGGAAAATGAATCAAAAACCATTTTATATACTTTTGCATGC
ACAATTGAAATGTGCTATCACTTACGGAACTCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAAATGCGATAAATGTGAAAGTCCTTTGAGCAAATAT
TCAGAGGTTACAGGCAAGTCCGCTTCGAAACCAAATTGTTTTTACGCTTC
GACCTGCGTTGATATCGGCGAAAAAGTGGACGAGTGTCACCCAACCGTCA
AGATGTTCGAACCCATTTTAGTTAATCCCAATAGCTACAAAAATGTGAAA
ACGGTccttgatgaaatcaaaatttccgCCAGAATTGGTATTGACCGGGA
GTGGATTTTTTTAGGATGTGACGGACCTCCTTATTGCTATTCGGAGAGAT
TAATTGAACAGGATCCAGAGATTTACAGCTACTTAAGTATGGTTCCAGGA
TTAGGGCATATGCATATGAATCAGATGAAAACACTCTTTAAAATTCTTGA
AGACGTGATACTGGAACCACTCGCAAAAGATGTGCTCAATTTTAACTCAC
CAAAagccttttctttttttgtcaatgCAAAAGACACACACAAATCATGG
CAAGCGATTCAGGTGCTGCTATTTGGTACTTCTTTCGAGCTTGTCCGTCA
ATATGTGCTTGACGCTAAAAATGAAAACGATCCAACAAAGAAAGTTTCTG
TTCTTGGGTTTCTCGAGTGGTCTATTGAGAATAATAACCCAACAATATCC
ATGATATCGGAAGTCATATTCAATTTTGTGTTGCCGATCTTTATGTTTAA
AAATGGTGTGCGATGTAATGATTCAAAGCTAATTGATGCAGCTCGTTTTA
AATTTGAGGATTTGTTTTATACCCTTACTACCGCGAAGTTTCGTACCGAG
ATTTAAGAAATCCCGTCCTTTATCATCCTGCTGTGAGAGAGCACCGTGAT
AAATACATGTCTTATAGCACAACCAAAGTCCCAAGAAAAAGTCAGGGACA
AGACTTTATTCTAGAAGGTAAGGTGCAGCGCCAGAAATTGATTGCACCGA
AAGGTCCGATCAAGGCTGCAACGTGGCAAACACTTTCACGCTCTTTGGAt
aaatttgaagaaatataCACATCAGTCTCAAAGAAGCTTGATCTTCCGGA
TACAGAAAAAGCGAGACTGATCGACTTGAATGAAGAAATCTTAACATGGA
GGGCTGTATTGCGTGGTTCCAAATTCCTGACTACCGATAATTATAGCGAT
CTGCCAAGAAACTTTGCTCACAATTTTCTTTCAGACGACATAGCTAACTT
ATCCGAGCGTGCTGAATCTAAGAGAAAGCTGGTGTGGCAGAAAGTGGAAA
ATGGAGAATCAATTGTCAATGTAAAATATGACTTTTTGAAAGTACTACCC
GGAAAAATTATTGATGATCTTTTATATATTCCAGCACAAGATGGTGAATA
TGAAGAAATCAGTAATTAGTTTGTAATCATATTCCTCTAAATTATTTTAT
CAATTCATATTGATTTGAGATCGGTTCTAAAAATCATTACCTTTTTTTGA
TTCACAAG Run BLAST on NCBI protein sequence of TCONS_00006376-protein >TCONS_00006376-protein ID=TCONS_00006376-protein|Name=TCONS_00006376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
IVNWKMNQKPFYILLHAQLKCAITYGTXXXXXXXXXXXKCDKCESPLSKY
SEVTGKSASKPNCFYASTCVDIGEKVDECHPTVKMFEPILVNPNSYKNVK
TVLDEIKISARIGIDREWIFLGCDGPPYCYSERLIEQDPEIYSYLSMVPG
LGHMHMNQMKTLFKILEDVILEPLAKDVLNFNSPKAFSFFVNAKDTHKSW
QAIQVLLFGTSFELVRQYVLDAKNENDPTKKVSVLGFLEWSIENNNPTIS
MISEVIFNFVLPIFMFKNGVRCNDSKLIDAARFKFEDLFYTLTTAKFRTE
I Run BLAST on NCBI transcript from alignment at sc0000066:765583..767140 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006376 ID=TCONS_00006376|Name=TCONS_00006376|organism=Clytia hemisphaerica|type=transcript|length=1558bp|location=Sequence derived from alignment at sc0000066:765583..767140 (Clytia hemisphaerica)
CTTGTGAATCAAAAAAAGGTAATGATTTTTAGAACCGATCTCAAATCAAT
ATGAATTGATAAAATAATTTAGAGGAATATGATTACAAACTAATTACTGA
TTTCTTCATATTCACCATCTTGTGCTGGAATATATAAAAGATCATCAATA
ATTTTTCCGGGTAGTACTTTCAAAAAGTCATATTTTACATTGACAATTGA
TTCTCCATTTTCCACTTTCTGCCACACCAGCTTTCTCTTAGATTCAGCAC
GCTCGGATAAGTTAGCTATGTCGTCTGAAAGAAAATTGTGAGCAAAGTTT
CTTGGCAGATCGCTATAATTATCGGTAGTCAGGAATTTGGAACCACGCAA
TACAGCCCTCCATGTTAAGATTTCTTCATTCAAGTCGATCAGTCTCGCTT
TTTCTGTATCCGGAAGATCAAGCTTCTTTGAGACTGATGTGtatatttct
tcaaatttaTCCAAAGAGCGTGAAAGTGTTTGCCACGTTGCAGCCTTGAT
CGGACCTTTCGGTGCAATCAATTTCTGGCGCTGCACCTTACCTTCTAGAA
TAAAGTCTTGTCCCTGACTTTTTCTTGGGACTTTGGTTGTGCTATAAGAC
ATGTATTTATCACGGTGCTCTCTCACAGCAGGATGATAAAGGACGGGATT
TCTTAAATCTCGGTACGAAACTTCGCGGTAGTAAGGGTATAAAACAAATC
CTCAAATTTAAAACGAGCTGCATCAATTAGCTTTGAATCATTACATCGCA
CACCATTTTTAAACATAAAGATCGGCAACACAAAATTGAATATGACTTCC
GATATCATGGATATTGTTGGGTTATTATTCTCAATAGACCACTCGAGAAA
CCCAAGAACAGAAACTTTCTTTGTTGGATCGTTTTCATTTTTAGCGTCAA
GCACATATTGACGGACAAGCTCGAAAGAAGTACCAAATAGCAGCACCTGA
ATCGCTTGCCATGATTTGTGTGTGTCTTTTGcattgacaaaaaaagaaaa
ggctTTTGGTGAGTTAAAATTGAGCACATCTTTTGCGAGTGGTTCCAGTA
TCACGTCTTCAAGAATTTTAAAGAGTGTTTTCATCTGATTCATATGCATA
TGCCCTAATCCTGGAACCATACTTAAGTAGCTGTAAATCTCTGGATCCTG
TTCAATTAATCTCTCCGAATAGCAATAAGGAGGTCCGTCACATCCTAAAA
AAATCCACTCCCGGTCAATACCAATTCTGGcggaaattttgatttcatca
aggACCGTTTTCACATTTTTGTAGCTATTGGGATTAACTAAAATGGGTTC
GAACATCTTGACGGTTGGGTGACACTCGTCCACTTTTTCGCCGATATCAA
CGCAGGTCGAAGCGTAAAAACAATTTGGTTTCGAAGCGGACTTGCCTGTA
ACCTCTGAATATTTGCTCAAAGGACTTTCACATTTATCGCATTTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGAGTTCCGTAAGTGATAGCACATT
TCAATTGTGCATGCAAAAGTATATAAAATGGTTTTTGATTCATTTTCCAG
TTTACGAT Coding sequence (CDS) from alignment at sc0000066:765583..767140 >TCONS_00006376 ID=TCONS_00006376|Name=TCONS_00006376|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at sc0000066:765583..767140 (Clytia hemisphaerica)
TTAAATCTCGGTACGAAACTTCGCGGTAGTAAGGGTATAAAACAAATCCT
CAAATTTAAAACGAGCTGCATCAATTAGCTTTGAATCATTACATCGCACA
CCATTTTTAAACATAAAGATCGGCAACACAAAATTGAATATGACTTCCGA
TATCATGGATATTGTTGGGTTATTATTCTCAATAGACCACTCGAGAAACC
CAAGAACAGAAACTTTCTTTGTTGGATCGTTTTCATTTTTAGCGTCAAGC
ACATATTGACGGACAAGCTCGAAAGAAGTACCAAATAGCAGCACCTGAAT
CGCTTGCCATGATTTGTGTGTGTCTTTTGcattgacaaaaaaagaaaagg
ctTTTGGTGAGTTAAAATTGAGCACATCTTTTGCGAGTGGTTCCAGTATC
ACGTCTTCAAGAATTTTAAAGAGTGTTTTCATCTGATTCATATGCATATG
CCCTAATCCTGGAACCATACTTAAGTAGCTGTAAATCTCTGGATCCTGTT
CAATTAATCTCTCCGAATAGCAATAAGGAGGTCCGTCACATCCTAAAAAA
ATCCACTCCCGGTCAATACCAATTCTGGcggaaattttgatttcatcaag
gACCGTTTTCACATTTTTGTAGCTATTGGGATTAACTAAAATGGGTTCGA
ACATCTTGACGGTTGGGTGACACTCGTCCACTTTTTCGCCGATATCAACG
CAGGTCGAAGCGTAAAAACAATTTGGTTTCGAAGCGGACTTGCCTGTAAC
CTCTGAATATTTGCTCAAAGGACTTTCACATTTATCGCATTTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGAGTTCCGTAAGTGATAGCACATTTC
AATTGTGCATGCAAAAGTATATAAAATGGTTTTTGATTCATTTTCCAGTT
TACGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006376-exon-sc0000066-1491911889:765583..767140 | TCONS_00006376-exon-sc0000066-1491911889:765583..767140 | Clytia hemisphaerica | exon |
| TCONS_00006376-exon-sc0000066-1510915933:765583..767140 | TCONS_00006376-exon-sc0000066-1510915933:765583..767140 | Clytia hemisphaerica | exon |
| TCONS_00006376-exon-sc0000066-1575043694:765583..767140 | TCONS_00006376-exon-sc0000066-1575043694:765583..767140 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:765583..767140 . |
Blast
The following BLAST results are available for this feature:
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