TCONS_00006365 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006365
Unique NameTCONS_00006365
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006365 ID=TCONS_00006365|Name=TCONS_00006365|organism=Clytia hemisphaerica|type=transcript|length=434bp
TACGACTCTCCAGCCAGATTTTTCAAGACAGTAGAATTAGCATCTATGCT
CTTTTCATCTGTTGGAACTTTGTCGTACTTGACCGATCCATAAACACAAA
CCACGAGTAGTATAATTATGATAACTCCCAAGATTGTAAAACCGATGGTA
TATCTGAGTTTCCAACATTTGAATAAATTCCGGTTATCCTGTATACGACA
GATATCCGAATCtgtattgttttcttttttcgtcGGTATTTTTGTGTCGT
TTATGACGCTCATTTGTGAAGAAGAGTTATTAATGTAATGTGCGACTGTA
TTTCGGTTCGTTCCATTCTTATCTTGTTGCAGTCCTTCTGCTGATGCCAG
CAATGTTCTTGATTCGTAAGAAGTTACATCAAAATCACACAGGAACAACA
TTAAGAAAATCCATGACATAtttctaaatgtttt
Run BLAST on NCBI

protein sequence of TCONS_00006365-protein

>TCONS_00006365-protein ID=TCONS_00006365-protein|Name=TCONS_00006365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
KTFRNMSWIFLMLFLCDFDVTSYESRTLLASAEGLQQDKNGTNRNTVAHY
INNSSSQMSVINDTKIPTKKENNTDSDICRIQDNRNLFKCWKLRYTIGFT
ILGVIIIILLVVCVYGSVKYDKVPTDEKSIDANSTVLKNLAGES
Run BLAST on NCBI

transcript from alignment at sc0000066:494447..494880

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006365 ID=TCONS_00006365|Name=TCONS_00006365|organism=Clytia hemisphaerica|type=transcript|length=434bp|location=Sequence derived from alignment at sc0000066:494447..494880 (Clytia hemisphaerica)
aaaacatttagaaaTATGTCATGGATTTTCTTAATGTTGTTCCTGTGTGA TTTTGATGTAACTTCTTACGAATCAAGAACATTGCTGGCATCAGCAGAAG GACTGCAACAAGATAAGAATGGAACGAACCGAAATACAGTCGCACATTAC ATTAATAACTCTTCTTCACAAATGAGCGTCATAAACGACACAAAAATACC gacgaaaaaagaaaacaatacaGATTCGGATATCTGTCGTATACAGGATA ACCGGAATTTATTCAAATGTTGGAAACTCAGATATACCATCGGTTTTACA ATCTTGGGAGTTATCATAATTATACTACTCGTGGTTTGTGTTTATGGATC GGTCAAGTACGACAAAGTTCCAACAGATGAAAAGAGCATAGATGCTAATT CTACTGTCTTGAAAAATCTGGCTGGAGAGTCGTA

Coding sequence (CDS) from alignment at sc0000066:494447..494880

>TCONS_00006365 ID=TCONS_00006365|Name=TCONS_00006365|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at sc0000066:494447..494880 (Clytia hemisphaerica)
aaaacatttagaaaTATGTCATGGATTTTCTTAATGTTGTTCCTGTGTGA
TTTTGATGTAACTTCTTACGAATCAAGAACATTGCTGGCATCAGCAGAAG
GACTGCAACAAGATAAGAATGGAACGAACCGAAATACAGTCGCACATTAC
ATTAATAACTCTTCTTCACAAATGAGCGTCATAAACGACACAAAAATACC
gacgaaaaaagaaaacaatacaGATTCGGATATCTGTCGTATACAGGATA
ACCGGAATTTATTCAAATGTTGGAAACTCAGATATACCATCGGTTTTACA
ATCTTGGGAGTTATCATAATTATACTACTCGTGGTTTGTGTTTATGGATC
GGTCAAGTACGACAAAGTTCCAACAGATGAAAAGAGCATAGATGCTAATT
CTACTGTCTTGAAAAATCTGGCTGGAGAGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003638XLOC_003638Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006365-exon-sc0000066-1491911889:494447..494880TCONS_00006365-exon-sc0000066-1491911889:494447..494880Clytia hemisphaericaexon
TCONS_00006365-exon-sc0000066-1510915933:494447..494880TCONS_00006365-exon-sc0000066-1510915933:494447..494880Clytia hemisphaericaexon
TCONS_00006365-exon-sc0000066-1575043694:494447..494880TCONS_00006365-exon-sc0000066-1575043694:494447..494880Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006365-proteinTCONS_00006365-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:494447..494880 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.788394 0.615047 0.89266 0.349332 0 0 0 0 0 0 0 0 7.34071 9.5837 5.01397 7.30246 0 0.970595 1.50855 0.526195 0.762264 0.66925 0.180791 0.657463 1.52364 1.96417 0.216209 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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