TCONS_00006362 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006362
Unique NameTCONS_00006362
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006362 ID=TCONS_00006362|Name=TCONS_00006362|organism=Clytia hemisphaerica|type=transcript|length=407bp
AGAGAGCTCAAAGTGCAACTTTGGTGCAACTGTAGGTTTTAAAAAAGGGT
ATCCACTGAAATGATTCGTTATTAATGGCACATATTTACACACAAAGACT
AATCATGTaaagggaaaatttttatttcacctCAATTATTGTTGATACAT
TTATTATGGAAATAAGATACATTTGTGTATGCAACCagaacgagtgcaat
tcgagaataattgtacgagtgatttcttttttttttaaagtcgagacaaa
aaaaaatcacgagtgcaattttcgaatcgcacgagttatcatgtgattac
gagctagtTAGTCAGGGAGCAGAGcgccaaaaaaatcaaataacacTCGG
gactttttgaaactttcagggATGGTTAAGTAGGCCTAAAGGGTCACAAA
ACCGTTT
Run BLAST on NCBI

transcript from alignment at sc0000066:427367..427773

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006362 ID=TCONS_00006362|Name=TCONS_00006362|organism=Clytia hemisphaerica|type=transcript|length=407bp|location=Sequence derived from alignment at sc0000066:427367..427773 (Clytia hemisphaerica)
AAACGGTTTTGTGACCCTTTAGGCCTACTTAACCATccctgaaagtttca
aaaagtcCCGAgtgttatttgatttttttggcgCTCTGCTCCCTGACTAa
ctagctcgtaatcacatgataactcgtgcgattcgaaaattgcactcgtg
atttttttttgtctcgactttaaaaaaaaaagaaatcactcgtacaatta
ttctcgaattgcactcgttctGGTTGCATACACAAATGTATCTTATTTCC
ATAATAAATGTATCAACAATAATTGaggtgaaataaaaattttccctttA
CATGATTAGTCTTTGTGTGTAAATATGTGCCATTAATAACGAATCATTTC
AGTGGATACCCTTTTTTAAAACCTACAGTTGCACCAAAGTTGCACTTTGA
GCTCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003635XLOC_003635Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006362-exon-sc0000066-1491911889:427367..427773TCONS_00006362-exon-sc0000066-1491911889:427367..427773Clytia hemisphaericaexon
TCONS_00006362-exon-sc0000066-1510915933:427367..427773TCONS_00006362-exon-sc0000066-1510915933:427367..427773Clytia hemisphaericaexon
TCONS_00006362-exon-sc0000066-1575043694:427367..427773TCONS_00006362-exon-sc0000066-1575043694:427367..427773Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:427367..427773 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.151651	0.187028	0.183072	0.119698	3.33669	0.744275	0.306916	0.218375	0	0.689343	2.47615	3.03273	2.09742	2.78854	0.62494	1.12068	0	0.343386	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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